Wall clock time and date at job start Mon Mar 30 2020 04:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47898 * 111.00379 * 2 1 4 4 C 1.53991 * 107.06201 * 145.84197 * 3 2 1 5 5 C 1.54596 * 105.14044 * 358.77648 * 4 3 2 6 6 H 1.09004 * 110.72488 * 96.57433 * 5 4 3 7 7 N 1.46902 * 110.72945 * 219.68374 * 5 4 3 8 8 C 1.46846 * 110.99617 * 304.20956 * 7 5 4 9 9 C 1.53040 * 109.51964 * 174.15808 * 8 7 5 10 10 C 1.53119 * 109.28089 * 59.17912 * 9 8 7 11 11 C 1.52993 * 109.52330 * 182.43958 * 10 9 8 12 12 C 1.50698 * 109.47494 * 294.68226 * 11 10 9 13 13 H 1.08003 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00535 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99627 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47065 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47541 * 119.99684 * 16 14 12 19 19 H 1.48501 * 109.46975 * 239.99725 * 16 14 12 20 20 C 1.53124 * 109.15841 * 302.34776 * 10 9 8 21 21 C 1.46846 * 111.00204 * 179.97438 * 7 5 4 22 22 C 1.48543 * 111.00027 * 117.39591 * 2 1 3 23 23 H 1.08999 * 109.47176 * 59.87298 * 1 2 3 24 24 H 1.08999 * 109.47399 * 179.87486 * 1 2 3 25 25 H 1.09001 * 109.47466 * 299.87603 * 1 2 3 26 26 H 1.09001 * 109.91488 * 26.48835 * 3 2 1 27 27 H 1.08998 * 109.91797 * 265.19511 * 3 2 1 28 28 H 1.09001 * 110.31315 * 239.86004 * 4 3 2 29 29 H 1.09005 * 110.31153 * 117.68954 * 4 3 2 30 30 H 1.08996 * 109.46231 * 294.17554 * 8 7 5 31 31 H 1.09004 * 109.46418 * 54.14394 * 8 7 5 32 32 H 1.09004 * 109.50602 * 299.23671 * 9 8 7 33 33 H 1.09001 * 109.53370 * 179.14510 * 9 8 7 34 34 H 1.09003 * 109.56984 * 62.28008 * 10 9 8 35 35 H 1.09007 * 109.47317 * 54.68551 * 11 10 9 36 36 H 1.09000 * 109.47026 * 174.68099 * 11 10 9 37 37 H 0.96997 * 119.99785 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.49853 * 297.70868 * 20 10 9 39 39 H 1.08994 * 109.53481 * 177.61659 * 20 10 9 40 40 H 1.09001 * 109.45990 * 305.85570 * 21 7 5 41 41 H 1.08999 * 109.46398 * 65.83493 * 21 7 5 42 42 H 1.09004 * 110.66343 * 81.83950 * 22 2 1 43 43 H 1.08997 * 110.66440 * 318.71491 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0930 1.3155 6 1 4.1140 -0.6533 0.6580 7 7 3.9385 -0.1293 2.7001 8 6 5.1992 0.6119 2.8322 9 6 5.6023 0.6765 4.3072 10 6 5.7657 -0.7461 4.8494 11 6 6.1093 -0.6890 6.3392 12 6 7.4594 -0.0442 6.5191 13 1 8.0165 0.2918 5.6571 14 6 7.9834 0.1169 7.7842 15 7 7.3048 -0.2918 8.8340 16 14 9.6566 0.9168 8.0072 17 1 10.2099 1.2856 6.6794 18 1 9.5147 2.1374 8.8410 19 1 10.5758 -0.0370 8.6784 20 6 4.4538 -1.5115 4.6557 21 6 4.0835 -1.5127 3.1709 22 6 2.0013 -0.6381 1.2312 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3634 -1.0276 -0.0022 25 1 -0.3634 0.5119 0.8911 26 1 1.2758 2.0561 0.4571 27 1 2.2123 1.6966 -1.0212 28 1 3.2136 2.0429 1.6766 29 1 4.1470 1.6454 0.2024 30 1 5.9796 0.1054 2.2643 31 1 5.0681 1.6231 2.4469 32 1 4.8287 1.1952 4.8735 33 1 6.5459 1.2136 4.4039 34 1 6.5661 -1.2527 4.3101 35 1 5.3542 -0.1037 6.8641 36 1 6.1325 -1.7002 6.7457 37 1 7.6736 -0.1788 9.7239 38 1 3.6622 -1.0273 5.2275 39 1 4.5763 -2.5380 5.0010 40 1 3.1422 -2.0443 3.0314 41 1 4.8690 -2.0097 2.6016 42 1 2.0040 -1.7236 1.1316 43 1 1.4237 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:52 Heat of formation + Delta-G solvation = -27.345245 kcal Electronic energy + Delta-G solvation = -19245.872718 eV Core-core repulsion = 16517.072635 eV Total energy + Delta-G solvation = -2728.800083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75093 -38.96597 -36.00127 -34.29948 -32.25939 -31.63868 -30.05412 -28.57926 -26.44856 -25.29983 -23.99732 -22.70259 -21.68858 -21.02876 -20.45570 -18.43552 -17.58146 -16.96123 -16.51455 -15.77570 -15.55782 -15.39545 -14.99262 -14.74634 -14.64145 -14.44113 -14.07930 -13.92229 -13.44231 -13.27196 -13.04137 -12.71047 -12.60728 -12.42939 -12.41705 -12.26935 -12.07924 -11.99933 -11.96283 -11.64574 -11.53367 -11.24369 -10.86080 -10.67327 -10.52126 -9.43274 -9.24307 -8.17192 -6.26741 1.39504 1.39795 1.52785 2.41904 2.73907 3.15926 3.30641 3.60381 3.74536 4.02133 4.08790 4.09650 4.15004 4.32510 4.40097 4.48153 4.54084 4.57425 4.59752 4.66922 4.72841 4.76291 4.84195 4.91762 4.93719 4.97105 5.01175 5.05027 5.12662 5.17179 5.20490 5.38370 5.41656 5.46253 5.58141 5.79834 5.83606 5.90294 6.02201 6.19301 6.26786 6.32082 6.89697 7.41694 8.94997 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.004063 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.456887 B = 6889.099302 C = 7223.867827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.040 3.960 4 C -0.124 4.124 5 C 0.079 3.921 6 H 0.050 0.950 7 N -0.537 5.537 8 C 0.066 3.934 9 C -0.093 4.093 10 C -0.075 4.075 11 C 0.034 3.966 12 C -0.528 4.528 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.106 4.106 21 C 0.067 3.933 22 C 0.049 3.951 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.047 0.953 35 H -0.012 1.012 36 H -0.015 1.015 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.032 0.968 42 H 0.082 0.918 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 1.676 -18.662 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.259 5.259 3 C -0.088 4.088 4 C -0.162 4.162 5 C -0.029 4.029 6 H 0.068 0.932 7 N -0.262 5.262 8 C -0.062 4.062 9 C -0.131 4.131 10 C -0.094 4.094 11 C -0.003 4.003 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.144 4.144 21 C -0.061 4.061 22 C -0.079 4.079 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.372 1.618 -18.676 21.926 hybrid contribution 1.179 0.257 1.131 1.654 sum -10.193 1.875 -17.545 20.378 Atomic orbital electron populations 1.22552 0.86704 1.02738 1.01221 1.64739 1.09329 1.15540 1.36325 1.22864 0.95454 0.89640 1.00865 1.22495 0.98299 0.95783 0.99653 1.22504 0.95615 0.96984 0.87839 0.93200 1.62002 1.29545 1.14206 1.20469 1.22051 0.89365 0.98783 0.95952 1.21414 1.00270 0.96592 0.94837 1.21089 0.95966 0.95913 0.96406 1.19010 0.94959 0.94395 0.91979 1.21683 1.03966 1.38535 0.92434 0.92147 1.25965 1.01638 0.96484 0.95940 1.70115 1.39941 1.48894 0.98733 0.85457 0.79364 0.78089 0.78506 1.18494 1.20516 1.20590 1.21589 0.97004 0.99746 0.96060 1.22016 1.00628 0.88765 0.94668 1.23162 0.93931 0.99579 0.91267 0.90211 0.90762 0.95390 0.93239 0.89355 0.90831 0.90217 0.95238 0.89566 0.93300 0.92468 0.93472 0.99409 0.99643 0.92965 0.92700 0.92008 0.89527 0.95000 0.89941 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.40 127.69 1.20 1.45 16 2 N -0.53 -10.25 5.55 -909.17 -5.05 -15.29 16 3 C 0.04 0.70 6.70 86.45 0.58 1.27 16 4 C -0.12 -2.43 5.33 31.47 0.17 -2.26 16 5 C 0.08 1.80 2.76 46.12 0.13 1.93 16 6 H 0.05 1.17 8.14 -2.38 -0.02 1.16 16 7 N -0.54 -14.71 4.50 -864.09 -3.89 -18.60 16 8 C 0.07 1.94 5.21 86.33 0.45 2.39 16 9 C -0.09 -3.52 5.15 30.65 0.16 -3.36 16 10 C -0.08 -3.13 2.20 -10.71 -0.02 -3.16 16 11 C 0.03 1.81 4.45 29.85 0.13 1.94 16 12 C -0.53 -30.19 8.45 25.60 0.22 -29.97 16 13 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 15 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 16 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 C -0.11 -3.71 5.38 30.64 0.16 -3.55 16 21 C 0.07 1.88 5.35 86.32 0.46 2.34 16 22 C 0.05 1.02 5.18 86.65 0.45 1.47 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.03 0.43 8.00 -2.39 -0.02 0.41 16 26 H 0.05 0.83 7.73 -2.39 -0.02 0.81 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.57 7.38 -2.39 -0.02 1.56 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 2.24 6.45 -2.38 -0.02 2.22 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.30 7.05 -2.39 -0.02 2.29 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 36 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 40 H 0.09 2.09 7.01 -2.39 -0.02 2.08 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.64 7.87 -2.38 -0.02 1.62 16 43 H 0.05 1.11 7.96 -2.39 -0.02 1.10 16 Total: -1.00 -63.99 325.90 -1.14 -65.13 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.94 Total: 8.82 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 4.54 Total: -29.25 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -8.65 Total: -91.53 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -63.99 -1.14 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.789 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds