Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48568 * 110.99983 * 2 1 4 4 C 1.54384 * 104.59193 * 200.96289 * 3 2 1 5 5 C 1.54254 * 105.06137 * 23.85695 * 4 3 2 6 6 H 1.08999 * 110.32372 * 241.00054 * 5 4 3 7 7 N 1.46896 * 110.32917 * 118.89579 * 5 4 3 8 8 C 1.46846 * 111.00458 * 179.97438 * 7 5 4 9 9 C 1.53034 * 109.52319 * 185.83858 * 8 7 5 10 10 C 1.53120 * 109.27967 * 300.82154 * 9 8 7 11 11 C 1.53004 * 109.52507 * 177.56412 * 10 9 8 12 12 C 1.50701 * 109.47211 * 175.12779 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.53118 * 109.21515 * 57.62376 * 10 9 8 21 21 C 1.46851 * 110.99555 * 304.20868 * 7 5 4 22 22 C 1.48562 * 110.99689 * 244.58748 * 2 1 3 23 23 H 1.09002 * 109.47534 * 60.11968 * 1 2 3 24 24 H 1.08998 * 109.47508 * 180.12548 * 1 2 3 25 25 H 1.09009 * 109.46733 * 300.12431 * 1 2 3 26 26 H 1.08997 * 110.40764 * 82.18758 * 3 2 1 27 27 H 1.09002 * 110.41071 * 319.74012 * 3 2 1 28 28 H 1.09000 * 110.32050 * 264.95357 * 4 3 2 29 29 H 1.09002 * 110.31992 * 142.74739 * 4 3 2 30 30 H 1.08997 * 109.46183 * 65.82072 * 8 7 5 31 31 H 1.09003 * 109.45979 * 305.85261 * 8 7 5 32 32 H 1.08999 * 109.50774 * 180.87834 * 9 8 7 33 33 H 1.09000 * 109.50716 * 60.76336 * 9 8 7 34 34 H 1.09001 * 109.51972 * 297.68333 * 10 9 8 35 35 H 1.09000 * 109.47211 * 55.11806 * 11 10 9 36 36 H 1.09007 * 109.46376 * 295.12348 * 11 10 9 37 37 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.50049 * 62.31848 * 20 10 9 39 39 H 1.09001 * 109.50230 * 182.43808 * 20 10 9 40 40 H 1.09001 * 109.46408 * 294.16936 * 21 7 5 41 41 H 1.09002 * 109.46784 * 54.14467 * 21 7 5 42 42 H 1.08996 * 110.41769 * 40.25475 * 22 2 1 43 43 H 1.09002 * 110.41047 * 277.81421 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4432 -0.0538 -1.3587 6 1 4.1495 -0.7686 -0.9365 7 7 3.7806 0.2283 -2.7602 8 6 3.7853 -1.0040 -3.5588 9 6 4.2804 -0.6948 -4.9734 10 6 3.3602 0.3475 -5.6146 11 6 3.8850 0.7058 -7.0065 12 6 2.9156 1.6400 -7.6837 13 1 2.0151 1.9471 -7.1727 14 6 3.1754 2.0977 -8.9581 15 7 2.3267 2.9086 -9.5513 16 14 4.7327 1.5661 -9.8422 17 1 4.4661 0.3236 -10.6105 18 1 5.1652 2.6401 -10.7721 19 1 5.8048 1.3120 -8.8466 20 6 3.3338 1.6032 -4.7388 21 6 2.8678 1.2275 -3.3303 22 6 2.0013 -0.5952 -1.2528 23 1 -0.3634 0.5120 -0.8910 24 1 -0.3634 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8890 26 1 2.0080 1.7916 1.0121 27 1 1.4098 2.0213 -0.6602 28 1 4.1483 1.1749 0.2933 29 1 3.6936 2.0996 -1.1700 30 1 2.7744 -1.4086 -3.6082 31 1 4.4468 -1.7353 -3.0942 32 1 4.2691 -1.6067 -5.5705 33 1 5.2965 -0.3031 -4.9259 34 1 2.3524 -0.0591 -5.6990 35 1 3.9896 -0.2023 -7.6002 36 1 4.8555 1.1935 -6.9143 37 1 2.5096 3.2309 -10.4477 38 1 4.3345 2.0322 -4.6875 39 1 2.6464 2.3320 -5.1683 40 1 1.8610 0.8128 -3.3808 41 1 2.8630 2.1167 -2.6999 42 1 1.4097 -0.2712 -2.1090 43 1 2.0078 -1.6830 -1.1840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = 0.686977 kcal Electronic energy + Delta-G solvation = -19580.825835 eV Core-core repulsion = 16853.241321 eV Total energy + Delta-G solvation = -2727.584514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09833 -37.61869 -34.48194 -32.43950 -31.17071 -30.34104 -28.96133 -27.41157 -25.48214 -23.58549 -22.83616 -21.60258 -20.73567 -19.72773 -18.75510 -16.77512 -16.41561 -16.07674 -14.87708 -14.67684 -14.37624 -14.27088 -13.82887 -13.73157 -13.36025 -12.92861 -12.79163 -12.47421 -12.15116 -11.90395 -11.84086 -11.66544 -11.51077 -11.34879 -11.04966 -10.97948 -10.74840 -10.60224 -10.52763 -10.13405 -9.70112 -9.58558 -9.25392 -8.98901 -8.69124 -8.50384 -8.09635 -6.01524 -3.98434 3.32571 3.40190 3.44730 3.76234 4.15651 4.48131 4.56321 4.59035 4.97394 5.10223 5.13146 5.26300 5.27909 5.31472 5.37306 5.37562 5.46688 5.52809 5.64517 5.65610 5.72628 5.81901 5.82580 5.86242 6.00005 6.02157 6.12619 6.20540 6.34176 6.49489 6.53303 6.62439 6.78348 6.86651 6.96254 7.04428 7.27725 7.31913 7.37181 7.52976 7.84008 8.57565 9.03409 9.61922 11.11956 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036875 B = 0.004696 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.145756 B = 5961.640830 C = 6245.392261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.514 5.514 3 C 0.029 3.971 4 C -0.122 4.122 5 C 0.082 3.918 6 H 0.090 0.910 7 N -0.526 5.526 8 C 0.059 3.941 9 C -0.115 4.115 10 C -0.073 4.073 11 C -0.009 4.009 12 C -0.514 4.514 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.100 4.100 21 C 0.049 3.951 22 C -0.004 4.004 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.009 0.991 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -6.037 18.461 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.099 4.099 4 C -0.160 4.160 5 C -0.028 4.028 6 H 0.108 0.892 7 N -0.250 5.250 8 C -0.069 4.069 9 C -0.153 4.153 10 C -0.091 4.091 11 C -0.046 4.046 12 C -0.552 4.552 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.706 3.294 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.138 4.138 21 C -0.078 4.078 22 C -0.134 4.134 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.035 0.965 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.266 -6.041 18.752 19.742 hybrid contribution -0.525 -0.151 -1.330 1.437 sum 0.741 -6.192 17.423 18.505 Atomic orbital electron populations 1.22510 0.88207 1.02109 1.00821 1.65360 1.08083 1.15473 1.34845 1.23178 0.95614 0.90095 1.01044 1.22448 0.95962 0.98157 0.99394 1.22472 0.93982 0.96901 0.89397 0.89184 1.62229 1.51327 1.10837 1.00594 1.22068 0.99225 0.90878 0.94709 1.21728 1.00497 0.99475 0.93556 1.21045 0.98021 0.93908 0.96162 1.19611 0.96898 0.96241 0.91858 1.21153 1.07162 1.26954 0.99899 0.91046 1.25030 0.96387 0.94764 0.97382 1.69920 1.36364 1.33868 1.14420 0.86800 0.84580 0.78276 0.79757 1.20442 1.21508 1.18974 1.21551 1.02082 0.98558 0.91591 1.22299 0.93451 0.94816 0.97235 1.23905 0.97559 1.00443 0.91511 0.95260 0.91379 0.91350 0.90170 0.93752 0.90724 0.89744 0.95201 0.91496 0.92130 0.91576 0.92597 0.97238 0.96534 0.92859 0.91895 0.90477 0.95354 0.91205 0.92874 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.06 0.57 0.69 16 2 N -0.51 -5.73 5.66 -238.22 -1.35 -7.08 16 3 C 0.03 0.30 6.49 -2.18 -0.01 0.28 16 4 C -0.12 -1.30 6.07 -25.35 -0.15 -1.45 16 5 C 0.08 0.97 3.20 -66.34 -0.21 0.76 16 6 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 7 N -0.53 -7.30 4.67 -225.04 -1.05 -8.35 16 8 C 0.06 0.82 5.14 -3.84 -0.02 0.80 16 9 C -0.11 -1.87 5.38 -26.65 -0.14 -2.01 16 10 C -0.07 -1.43 2.20 -90.49 -0.20 -1.63 16 11 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 12 C -0.51 -14.47 9.00 -34.44 -0.31 -14.78 16 13 H 0.07 2.15 7.31 -52.49 -0.38 1.77 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.01 13.96 55.43 0.77 -27.23 16 16 Si 0.88 21.91 27.46 -169.99 -4.67 17.24 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.27 -6.38 6.55 56.52 0.37 -6.01 16 20 C -0.10 -1.85 5.15 -26.65 -0.14 -1.98 16 21 C 0.05 0.74 4.76 -3.83 -0.02 0.73 16 22 C 0.00 -0.05 4.90 -2.18 -0.01 -0.06 16 23 H 0.03 0.30 7.97 -51.93 -0.41 -0.12 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.48 7.97 -51.93 -0.41 0.06 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.96 6.15 -51.93 -0.32 0.64 16 30 H 0.03 0.42 7.39 -51.93 -0.38 0.03 16 31 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 36 H 0.02 0.40 7.21 -51.93 -0.37 0.02 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.58 7.04 -51.93 -0.37 1.21 16 40 H 0.03 0.44 6.20 -51.93 -0.32 0.12 16 41 H 0.07 0.98 5.92 -51.93 -0.31 0.67 16 42 H 0.05 0.70 5.46 -51.93 -0.28 0.42 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -29.83 317.37 -10.13 -39.96 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.78 Total: -2.15 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.84 Total: -17.17 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -1.63 Total: -42.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.83 -10.13 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.651 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds