Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48568 * 110.99983 * 2 1 4 4 C 1.54384 * 104.59193 * 200.96289 * 3 2 1 5 5 C 1.54254 * 105.06137 * 23.85695 * 4 3 2 6 6 H 1.08999 * 110.32372 * 241.00054 * 5 4 3 7 7 N 1.46896 * 110.32917 * 118.89579 * 5 4 3 8 8 C 1.46846 * 111.00458 * 179.97438 * 7 5 4 9 9 C 1.53034 * 109.52319 * 185.83858 * 8 7 5 10 10 C 1.53120 * 109.27967 * 300.82154 * 9 8 7 11 11 C 1.53004 * 109.52507 * 177.56412 * 10 9 8 12 12 C 1.50701 * 109.47211 * 175.12779 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.53118 * 109.21515 * 57.62376 * 10 9 8 21 21 C 1.46851 * 110.99555 * 304.20868 * 7 5 4 22 22 C 1.48562 * 110.99689 * 244.58748 * 2 1 3 23 23 H 1.09002 * 109.47534 * 60.11968 * 1 2 3 24 24 H 1.08998 * 109.47508 * 180.12548 * 1 2 3 25 25 H 1.09009 * 109.46733 * 300.12431 * 1 2 3 26 26 H 1.08997 * 110.40764 * 82.18758 * 3 2 1 27 27 H 1.09002 * 110.41071 * 319.74012 * 3 2 1 28 28 H 1.09000 * 110.32050 * 264.95357 * 4 3 2 29 29 H 1.09002 * 110.31992 * 142.74739 * 4 3 2 30 30 H 1.08997 * 109.46183 * 65.82072 * 8 7 5 31 31 H 1.09003 * 109.45979 * 305.85261 * 8 7 5 32 32 H 1.08999 * 109.50774 * 180.87834 * 9 8 7 33 33 H 1.09000 * 109.50716 * 60.76336 * 9 8 7 34 34 H 1.09001 * 109.51972 * 297.68333 * 10 9 8 35 35 H 1.09000 * 109.47211 * 55.11806 * 11 10 9 36 36 H 1.09007 * 109.46376 * 295.12348 * 11 10 9 37 37 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.50049 * 62.31848 * 20 10 9 39 39 H 1.09001 * 109.50230 * 182.43808 * 20 10 9 40 40 H 1.09001 * 109.46408 * 294.16936 * 21 7 5 41 41 H 1.09002 * 109.46784 * 54.14467 * 21 7 5 42 42 H 1.08996 * 110.41769 * 40.25475 * 22 2 1 43 43 H 1.09002 * 110.41047 * 277.81421 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2501 -0.5345 5 6 3.4432 -0.0538 -1.3587 6 1 4.1495 -0.7686 -0.9365 7 7 3.7806 0.2283 -2.7602 8 6 3.7853 -1.0040 -3.5588 9 6 4.2804 -0.6948 -4.9734 10 6 3.3602 0.3475 -5.6146 11 6 3.8850 0.7058 -7.0065 12 6 2.9156 1.6400 -7.6837 13 1 2.0151 1.9471 -7.1727 14 6 3.1754 2.0977 -8.9581 15 7 2.3267 2.9086 -9.5513 16 14 4.7327 1.5661 -9.8422 17 1 4.4661 0.3236 -10.6105 18 1 5.1652 2.6401 -10.7721 19 1 5.8048 1.3120 -8.8466 20 6 3.3338 1.6032 -4.7388 21 6 2.8678 1.2275 -3.3303 22 6 2.0013 -0.5952 -1.2528 23 1 -0.3634 0.5120 -0.8910 24 1 -0.3634 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8890 26 1 2.0080 1.7916 1.0121 27 1 1.4098 2.0213 -0.6602 28 1 4.1483 1.1749 0.2933 29 1 3.6936 2.0996 -1.1700 30 1 2.7744 -1.4086 -3.6082 31 1 4.4468 -1.7353 -3.0942 32 1 4.2691 -1.6067 -5.5705 33 1 5.2965 -0.3031 -4.9259 34 1 2.3524 -0.0591 -5.6990 35 1 3.9896 -0.2023 -7.6002 36 1 4.8555 1.1935 -6.9143 37 1 2.5096 3.2309 -10.4477 38 1 4.3345 2.0322 -4.6875 39 1 2.6464 2.3320 -5.1683 40 1 1.8610 0.8128 -3.3808 41 1 2.8630 2.1167 -2.6999 42 1 1.4097 -0.2712 -2.1090 43 1 2.0078 -1.6830 -1.1840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = -19.835739 kcal Electronic energy + Delta-G solvation = -19581.715767 eV Core-core repulsion = 16853.241321 eV Total energy + Delta-G solvation = -2728.474446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14271 -38.80780 -35.95889 -34.33693 -32.36426 -31.62862 -30.32423 -28.68648 -26.54108 -25.09883 -24.15649 -22.78262 -21.98652 -20.97595 -20.09242 -18.86211 -17.52529 -16.97000 -16.35315 -15.88449 -15.76946 -15.50504 -15.20132 -14.85681 -14.61870 -14.38767 -14.27274 -13.76855 -13.69032 -13.21598 -13.02500 -12.81004 -12.66388 -12.47996 -12.39169 -12.28603 -12.12509 -11.93294 -11.82051 -11.64905 -11.57193 -11.24400 -10.93375 -10.80625 -10.70998 -9.56155 -9.21296 -8.27177 -6.29502 1.35293 1.37333 1.49484 2.37283 2.79591 3.08376 3.20540 3.68390 3.69757 3.95324 4.01225 4.06119 4.14752 4.27436 4.31654 4.40470 4.48019 4.49920 4.55382 4.57921 4.65593 4.76438 4.81746 4.84271 4.90795 4.92480 5.00359 5.01842 5.09915 5.16069 5.21254 5.23890 5.34717 5.39650 5.51469 5.68705 5.71071 5.75694 5.95335 6.15341 6.26746 6.33276 6.77619 7.34475 8.89657 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036875 B = 0.004696 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.145756 B = 5961.640830 C = 6245.392261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.519 5.519 3 C 0.029 3.971 4 C -0.119 4.119 5 C 0.083 3.917 6 H 0.103 0.897 7 N -0.529 5.529 8 C 0.063 3.937 9 C -0.108 4.108 10 C -0.071 4.071 11 C -0.006 4.006 12 C -0.519 4.519 13 H 0.032 0.968 14 C 0.002 3.998 15 N -0.954 5.954 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.247 1.247 20 C -0.095 4.095 21 C 0.063 3.937 22 C 0.000 4.000 23 H 0.019 0.981 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.017 0.983 37 H 0.264 0.736 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.021 0.979 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -7.600 20.113 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.243 5.243 3 C -0.099 4.099 4 C -0.157 4.157 5 C -0.026 4.026 6 H 0.121 0.879 7 N -0.253 5.253 8 C -0.065 4.065 9 C -0.145 4.145 10 C -0.090 4.090 11 C -0.043 4.043 12 C -0.557 4.557 13 H 0.050 0.950 14 C -0.194 4.194 15 N -0.596 5.596 16 Si 0.772 3.228 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.171 1.171 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.130 4.130 23 H 0.038 0.962 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.062 -7.617 20.431 22.019 hybrid contribution -1.183 0.376 -1.802 2.188 sum 1.879 -7.241 18.629 20.075 Atomic orbital electron populations 1.22552 0.87498 1.02612 1.01015 1.65394 1.08831 1.15811 1.34219 1.23216 0.95247 0.89694 1.01731 1.22446 0.96484 0.97200 0.99568 1.22555 0.94260 0.97834 0.87976 0.87853 1.62214 1.50759 1.10608 1.01697 1.22051 0.99718 0.91317 0.93406 1.21643 0.99396 0.98484 0.95023 1.20970 0.97921 0.95504 0.94574 1.19570 0.95665 0.95138 0.93916 1.21464 1.06752 1.27443 1.00057 0.94976 1.25996 1.00158 0.94830 0.98413 1.70076 1.38814 1.35632 1.15067 0.85688 0.80324 0.78127 0.78687 1.19295 1.21147 1.17094 1.21418 1.00982 0.97376 0.93561 1.22059 0.93196 0.95886 0.95285 1.23837 0.97237 1.00777 0.91180 0.96228 0.90783 0.89991 0.88657 0.94638 0.89193 0.90555 0.95296 0.88805 0.91049 0.91495 0.94174 0.96725 0.96464 0.92689 0.92281 0.93846 0.96075 0.90103 0.94724 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.53 127.69 1.22 1.43 16 2 N -0.52 -10.52 5.66 -907.59 -5.14 -15.65 16 3 C 0.03 0.54 6.49 86.45 0.56 1.11 16 4 C -0.12 -2.26 6.07 31.49 0.19 -2.07 16 5 C 0.08 1.74 3.20 45.81 0.15 1.89 16 6 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 7 N -0.53 -13.61 4.67 -865.89 -4.05 -17.66 16 8 C 0.06 1.58 5.14 86.32 0.44 2.03 16 9 C -0.11 -3.29 5.38 30.65 0.16 -3.13 16 10 C -0.07 -2.79 2.20 -10.71 -0.02 -2.81 16 11 C -0.01 -0.26 3.52 29.85 0.11 -0.16 16 12 C -0.52 -30.19 9.00 25.60 0.23 -29.96 16 13 H 0.03 2.06 7.31 -2.91 -0.02 2.04 16 14 C 0.00 0.12 5.47 84.65 0.46 0.59 16 15 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 16 Si 0.95 45.06 27.46 68.60 1.88 46.95 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.25 -10.96 6.55 99.48 0.65 -10.31 16 20 C -0.10 -3.59 5.15 30.65 0.16 -3.44 16 21 C 0.06 1.89 4.76 86.33 0.41 2.30 16 22 C 0.00 -0.01 4.90 86.45 0.42 0.41 16 23 H 0.02 0.38 7.97 -2.39 -0.02 0.36 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.04 0.73 7.97 -2.39 -0.02 0.71 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.59 6.15 -2.39 -0.01 1.58 16 30 H 0.03 0.75 7.39 -2.39 -0.02 0.73 16 31 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.01 0.67 7.56 -2.39 -0.02 0.65 16 36 H 0.02 0.81 7.21 -2.38 -0.02 0.79 16 37 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.89 7.04 -2.39 -0.02 1.87 16 40 H 0.02 0.67 6.20 -2.39 -0.01 0.65 16 41 H 0.08 2.23 5.92 -2.39 -0.01 2.22 16 42 H 0.03 0.88 5.46 -2.39 -0.01 0.87 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.24 317.37 -1.61 -66.86 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.90 Total: 11.81 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 4.49 Total: -31.81 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -8.88 Total: -93.80 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -65.24 -1.61 -66.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.021 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds