Wall clock time and date at job start Mon Mar 30 2020 04:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46955 * 111.00243 * 2 1 4 4 C 1.53051 * 109.36300 * 183.18880 * 3 2 1 5 5 N 1.46952 * 109.36614 * 301.59626 * 4 3 2 6 6 C 1.46901 * 111.00200 * 183.18889 * 5 4 3 7 7 H 1.08998 * 109.47321 * 296.64784 * 6 5 4 8 8 C 1.52998 * 109.47116 * 176.64454 * 6 5 4 9 9 C 1.53006 * 109.46781 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47094 * 60.00332 * 9 8 6 11 11 C 1.53002 * 109.47403 * 299.99885 * 10 9 8 12 12 C 1.52997 * 109.46980 * 59.99787 * 11 10 9 13 13 H 1.09004 * 109.46894 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46880 * 60.00589 * 12 11 10 15 15 H 1.08006 * 119.99865 * 274.77843 * 14 12 11 16 16 C 1.37878 * 120.00427 * 94.78087 * 14 12 11 17 17 N 1.31508 * 120.00100 * 184.62082 * 16 14 12 18 18 Si 1.86804 * 119.99554 * 4.61889 * 16 14 12 19 19 H 1.48504 * 109.46751 * 84.54450 * 18 16 14 20 20 H 1.48496 * 109.47037 * 204.53895 * 18 16 14 21 21 H 1.48499 * 109.47387 * 324.54467 * 18 16 14 22 22 C 1.46955 * 110.87826 * 59.32268 * 5 4 3 23 23 C 1.46965 * 110.99819 * 123.80019 * 2 1 3 24 24 H 1.09001 * 109.46938 * 59.99600 * 1 2 3 25 25 H 1.08994 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46496 * 300.00107 * 1 2 3 27 27 H 1.09002 * 109.48803 * 63.21904 * 3 2 1 28 28 H 1.09000 * 109.48654 * 303.15684 * 3 2 1 29 29 H 1.09008 * 109.48318 * 181.63152 * 4 3 2 30 30 H 1.08997 * 109.49175 * 61.56693 * 4 3 2 31 31 H 1.09004 * 109.46816 * 60.00280 * 8 6 5 32 32 H 1.08998 * 109.47295 * 300.00345 * 8 6 5 33 33 H 1.09000 * 109.47069 * 299.99686 * 9 8 6 34 34 H 1.09004 * 109.46815 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.47587 * 60.00200 * 10 9 8 36 36 H 1.09000 * 109.47045 * 179.97438 * 10 9 8 37 37 H 1.08994 * 109.47191 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46575 * 300.00532 * 11 10 9 39 39 H 0.97008 * 119.99715 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.48928 * 60.64563 * 22 5 4 41 41 H 1.09000 * 109.48654 * 180.71114 * 22 5 4 42 42 H 1.09000 * 109.48645 * 296.77390 * 23 2 1 43 43 H 1.08998 * 109.48531 * 56.84173 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3289 -0.0803 5 7 4.0502 0.5658 1.0597 6 6 5.5192 0.5657 1.0597 7 1 5.8825 0.0588 0.1658 8 6 6.0291 -0.1652 2.3034 9 6 7.5592 -0.1647 2.3036 10 6 8.0687 1.2779 2.3151 11 6 7.5587 2.0089 1.0715 12 6 6.0287 2.0083 1.0712 13 1 5.6654 2.5287 0.1850 14 6 5.5260 2.7089 2.3072 15 1 5.4195 2.1618 3.2323 16 6 5.2019 4.0481 2.2569 17 7 4.8503 4.6811 3.3547 18 14 5.2623 4.9632 0.6295 19 1 3.9839 4.7625 -0.0989 20 1 5.4650 6.4121 0.8836 21 1 6.3859 4.4423 -0.1899 22 6 3.5235 -0.8061 1.0597 23 6 1.9957 -0.7633 1.1401 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6938 1.8774 0.9174 28 1 1.6014 1.9128 -0.8603 29 1 3.9179 2.3448 -0.0512 30 1 3.8254 0.8478 -1.0106 31 1 5.6657 -1.1929 2.2954 32 1 5.6658 0.3417 3.1973 33 1 7.9228 -0.6714 1.4097 34 1 7.9225 -0.6858 3.1894 35 1 7.7051 1.7846 3.2091 36 1 9.1587 1.2782 2.3158 37 1 7.9220 3.0364 1.0795 38 1 7.9223 1.5021 0.1776 39 1 4.6219 5.6233 3.3192 40 1 3.8253 -1.3115 0.1424 41 1 3.9178 -1.3470 1.9200 42 1 1.6938 -0.2820 2.0704 43 1 1.6013 -1.7790 1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:42 Heat of formation + Delta-G solvation = -14.340236 kcal Electronic energy + Delta-G solvation = -20547.307483 eV Core-core repulsion = 17819.071340 eV Total energy + Delta-G solvation = -2728.236143 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79726 -38.87938 -35.65374 -34.47325 -32.34981 -31.30513 -30.92187 -28.22600 -26.46732 -24.83090 -24.51993 -22.45121 -22.27692 -20.63759 -20.42148 -18.22463 -17.47040 -16.28001 -15.98928 -15.94887 -15.77861 -15.65366 -15.33161 -15.12632 -14.56958 -14.40008 -14.06773 -13.78488 -13.47480 -13.23287 -13.02629 -12.94262 -12.76713 -12.36275 -12.15552 -12.11978 -11.92746 -11.79964 -11.74734 -11.56062 -11.49875 -11.01810 -10.68751 -10.47715 -10.36237 -9.38042 -8.91036 -8.09836 -6.03651 1.32746 1.35852 1.43109 2.43646 2.98234 3.07942 3.30712 3.95829 3.97588 4.09897 4.15284 4.23848 4.33788 4.39692 4.45478 4.53820 4.60741 4.63540 4.67788 4.70647 4.77677 4.83192 4.88039 4.90211 4.94345 4.98095 4.99747 5.07342 5.13112 5.14854 5.24397 5.46604 5.55256 5.59468 5.66714 5.71351 5.92822 5.99216 6.08242 6.41420 6.47405 6.62540 6.99722 7.55646 9.07716 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.009927 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.804380 B = 2819.988792 C = 3825.514681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.063 3.937 4 C 0.063 3.937 5 N -0.535 5.535 6 C 0.110 3.890 7 H 0.026 0.974 8 C -0.101 4.101 9 C -0.104 4.104 10 C -0.106 4.106 11 C -0.110 4.110 12 C 0.010 3.990 13 H 0.021 0.979 14 C -0.438 4.438 15 H 0.042 0.958 16 C 0.007 3.993 17 N -0.960 5.960 18 Si 0.915 3.085 19 H -0.269 1.269 20 H -0.301 1.301 21 H -0.251 1.251 22 C 0.056 3.944 23 C 0.060 3.940 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.054 0.946 39 H 0.255 0.745 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 -12.284 -7.846 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.066 4.066 4 C -0.065 4.065 5 N -0.260 5.260 6 C 0.002 3.998 7 H 0.044 0.956 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.148 4.148 12 C -0.009 4.009 13 H 0.039 0.961 14 C -0.477 4.477 15 H 0.060 0.940 16 C -0.187 4.187 17 N -0.603 5.603 18 Si 0.742 3.258 19 H -0.195 1.195 20 H -0.228 1.228 21 H -0.175 1.175 22 C -0.072 4.072 23 C -0.068 4.068 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.041 0.959 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.449 -12.128 -7.795 14.623 hybrid contribution -0.225 1.384 -0.225 1.420 sum -2.674 -10.744 -8.020 13.671 Atomic orbital electron populations 1.22412 0.86021 1.03033 1.00761 1.62263 1.08966 1.13110 1.42913 1.22069 0.94515 0.89846 1.00123 1.22021 0.94415 0.98437 0.91642 1.61955 1.08327 1.13206 1.42511 1.21461 0.85760 0.96450 0.96155 0.95586 1.21501 0.95931 0.98715 0.97697 1.21420 0.94626 0.96121 1.02001 1.21349 0.98993 0.95952 0.98088 1.21658 0.97073 0.98603 0.97469 1.19322 0.92877 0.93255 0.95484 0.96077 1.20909 1.38160 0.93007 0.95594 0.94005 1.25654 0.96273 0.98701 0.98035 1.70046 1.51086 1.10104 1.29087 0.86256 0.79606 0.77346 0.82586 1.19485 1.22821 1.17511 1.22233 0.94460 0.89635 1.00880 1.22192 0.94643 0.98835 0.91103 0.90583 0.89551 0.96350 0.96335 0.89630 0.92339 0.94623 0.91445 0.93480 0.91196 0.91153 0.93997 0.91832 0.94837 0.92689 0.93616 0.94440 0.89557 0.95857 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.60 127.69 1.23 1.80 16 2 N -0.55 -15.74 4.97 -921.91 -4.58 -20.31 16 3 C 0.06 2.14 5.62 86.31 0.49 2.63 16 4 C 0.06 2.40 5.24 86.31 0.45 2.85 16 5 N -0.54 -20.59 4.15 -870.49 -3.61 -24.20 16 6 C 0.11 4.19 1.63 44.92 0.07 4.26 16 7 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 8 C -0.10 -3.54 4.74 30.60 0.15 -3.39 16 9 C -0.10 -3.20 5.92 30.59 0.18 -3.02 16 10 C -0.11 -3.86 5.70 30.59 0.17 -3.69 16 11 C -0.11 -4.37 5.44 30.59 0.17 -4.20 16 12 C 0.01 0.43 1.29 -11.54 -0.01 0.42 16 13 H 0.02 0.98 3.63 -2.39 -0.01 0.97 16 14 C -0.44 -23.81 6.91 25.60 0.18 -23.63 16 15 H 0.04 2.56 6.27 -2.91 -0.02 2.54 16 16 C 0.01 0.42 5.47 84.66 0.46 0.88 16 17 N -0.96 -60.73 13.96 21.45 0.30 -60.43 16 18 Si 0.92 44.95 25.94 68.60 1.78 46.73 16 19 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 21 H -0.25 -11.49 6.85 99.48 0.68 -10.81 16 22 C 0.06 1.71 5.31 86.31 0.46 2.17 16 23 C 0.06 1.70 5.62 86.31 0.49 2.19 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 26 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 2.55 4.97 -2.38 -0.01 2.53 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 2.00 6.33 -2.38 -0.02 1.99 16 32 H 0.05 2.00 6.30 -2.39 -0.02 1.99 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.82 7.17 -2.38 -0.02 1.80 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 2.47 6.13 -2.39 -0.01 2.46 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 2.23 8.13 -2.39 -0.02 2.21 16 Total: -1.00 -64.53 309.80 -0.71 -65.24 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.93 Total: 13.71 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.47 Total: -20.74 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -7.89 Total: -104.94 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.78 Total: 46.73 kcal Total: -64.53 -0.71 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.903 kcal (2) G-P(sol) polarization free energy of solvation -64.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds