Wall clock time and date at job start Mon Mar 30 2020 04:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46957 * 110.99397 * 2 1 4 4 C 1.53055 * 109.36191 * 183.18478 * 3 2 1 5 5 N 1.46955 * 109.36602 * 301.59599 * 4 3 2 6 6 C 1.46895 * 111.00196 * 183.18526 * 5 4 3 7 7 H 1.08995 * 109.47172 * 187.13525 * 6 5 4 8 8 C 1.53001 * 109.47501 * 307.14043 * 6 5 4 9 9 C 1.53001 * 109.47436 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47026 * 300.00063 * 9 8 6 11 11 C 1.53005 * 109.47374 * 59.99831 * 10 9 8 12 12 C 1.52993 * 109.46976 * 300.00099 * 11 10 9 13 13 H 1.09006 * 109.47433 * 299.99764 * 12 11 10 14 14 C 1.50697 * 109.47301 * 180.02562 * 12 11 10 15 15 H 1.08006 * 120.00293 * 274.93785 * 14 12 11 16 16 C 1.37881 * 120.00380 * 94.92958 * 14 12 11 17 17 N 1.31510 * 120.00374 * 184.70608 * 16 14 12 18 18 Si 1.86801 * 119.99725 * 4.70761 * 16 14 12 19 19 H 1.48506 * 109.47007 * 84.50938 * 18 16 14 20 20 H 1.48497 * 109.46974 * 204.50964 * 18 16 14 21 21 H 1.48500 * 109.47157 * 324.50957 * 18 16 14 22 22 C 1.46958 * 110.87839 * 59.31972 * 5 4 3 23 23 C 1.46955 * 111.00087 * 123.79357 * 2 1 3 24 24 H 1.08994 * 109.46736 * 60.00605 * 1 2 3 25 25 H 1.09001 * 109.46589 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47586 * 299.99830 * 1 2 3 27 27 H 1.09005 * 109.49392 * 63.21905 * 3 2 1 28 28 H 1.08996 * 109.51110 * 303.15931 * 3 2 1 29 29 H 1.09005 * 109.48862 * 181.62912 * 4 3 2 30 30 H 1.08998 * 109.50459 * 61.57659 * 4 3 2 31 31 H 1.08996 * 109.46874 * 59.99306 * 8 6 5 32 32 H 1.08997 * 109.46712 * 299.99929 * 8 6 5 33 33 H 1.08995 * 109.47013 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46900 * 59.99654 * 9 8 6 35 35 H 1.08995 * 109.47464 * 299.99598 * 10 9 8 36 36 H 1.09000 * 109.47347 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.46818 * 60.00250 * 11 10 9 38 38 H 1.08997 * 109.47022 * 179.97438 * 11 10 9 39 39 H 0.97000 * 120.00307 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.49067 * 60.64654 * 22 5 4 41 41 H 1.09002 * 109.49067 * 180.71177 * 22 5 4 42 42 H 1.09000 * 109.49352 * 296.78555 * 23 2 1 43 43 H 1.09005 * 109.48804 * 56.84951 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0802 5 7 4.0500 0.5662 1.0599 6 6 5.5190 0.5662 1.0600 7 1 5.8823 -0.1070 1.8364 8 6 6.0291 0.0950 -0.3034 9 6 7.5592 0.0956 -0.3035 10 6 8.0685 1.5122 -0.0301 11 6 7.5584 1.9834 1.3332 12 6 6.0285 1.9827 1.3333 13 1 5.6648 2.6558 0.5569 14 6 5.5260 2.4475 2.6759 15 1 5.4222 1.7423 3.4874 16 6 5.1989 3.7730 2.8686 17 7 4.8491 4.1971 4.0632 18 14 5.2525 4.9664 1.4325 19 1 3.9726 4.8963 0.6825 20 1 5.4521 6.3465 1.9430 21 1 6.3753 4.6052 0.5303 22 6 3.5235 -0.8058 1.0600 23 6 1.9957 -0.7631 1.1401 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6936 1.8775 0.9173 28 1 1.6013 1.9132 -0.8601 29 1 3.9177 2.3450 -0.0512 30 1 3.8256 0.8483 -1.0105 31 1 5.6657 0.7682 -1.0797 32 1 5.6658 -0.9140 -0.4983 33 1 7.9225 -0.2404 -1.2746 34 1 7.9228 -0.5774 0.4730 35 1 7.7050 2.1852 -0.8065 36 1 9.1585 1.5126 -0.0298 37 1 7.9222 1.3104 2.1096 38 1 7.9218 2.9924 1.5282 39 1 4.6193 5.1297 4.1988 40 1 3.8254 -1.3113 0.1426 41 1 3.9178 -1.3467 1.9203 42 1 1.6937 -0.2820 2.0704 43 1 1.6014 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:46 Heat of formation + Delta-G solvation = 0.863921 kcal Electronic energy + Delta-G solvation = -20490.775568 eV Core-core repulsion = 17763.198726 eV Total energy + Delta-G solvation = -2727.576842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47347 -37.40242 -34.26901 -32.65354 -30.59302 -30.10325 -29.50984 -26.80542 -24.52264 -23.44136 -23.21544 -21.47730 -20.57238 -19.37435 -18.30046 -16.69785 -15.97472 -14.96201 -14.66172 -14.55591 -14.43790 -14.01892 -13.68114 -13.52068 -13.12242 -13.02422 -12.42941 -12.33851 -12.19775 -11.89775 -11.55292 -11.25608 -11.12462 -10.97415 -10.86413 -10.73512 -10.47791 -10.35512 -10.18833 -10.13211 -9.67221 -9.54975 -9.08685 -8.78389 -8.35525 -8.14510 -7.35578 -5.91027 -3.84054 3.34035 3.43076 3.43569 4.17914 4.53634 4.54557 5.21489 5.24272 5.30735 5.38650 5.45882 5.51828 5.54686 5.59909 5.68369 5.81006 5.82598 5.89296 5.91038 5.94212 6.08813 6.11902 6.15783 6.19678 6.27842 6.31089 6.38928 6.43520 6.50396 6.57791 6.69720 6.78659 6.87311 7.04165 7.21455 7.25214 7.31456 7.44840 7.83292 7.91542 8.03607 8.70803 9.16808 9.73458 11.23666 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.009892 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.168453 B = 2830.031951 C = 3785.901718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.060 3.940 5 N -0.505 5.505 6 C 0.105 3.895 7 H 0.071 0.929 8 C -0.155 4.155 9 C -0.108 4.108 10 C -0.124 4.124 11 C -0.111 4.111 12 C 0.024 3.976 13 H 0.029 0.971 14 C -0.472 4.472 15 H 0.071 0.929 16 C 0.069 3.931 17 N -0.908 5.908 18 Si 0.866 3.134 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.056 3.944 23 C 0.058 3.942 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.259 0.741 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -8.548 -9.571 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.072 4.072 4 C -0.069 4.069 5 N -0.228 5.228 6 C -0.004 4.004 7 H 0.089 0.911 8 C -0.194 4.194 9 C -0.146 4.146 10 C -0.161 4.161 11 C -0.149 4.149 12 C 0.005 3.995 13 H 0.047 0.953 14 C -0.510 4.510 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.548 5.548 18 Si 0.695 3.305 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.192 1.192 22 C -0.072 4.072 23 C -0.070 4.070 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.662 -8.377 -9.446 12.903 hybrid contribution -0.117 0.804 -0.737 1.097 sum -2.779 -7.573 -10.183 12.991 Atomic orbital electron populations 1.22313 0.88001 1.01461 1.00473 1.62210 1.07178 1.14605 1.43083 1.22190 0.95571 0.88617 1.00828 1.22113 0.93198 0.99505 0.92053 1.62210 1.08041 1.11089 1.41433 1.21749 0.85211 0.99873 0.93526 0.91077 1.22320 0.96151 1.00236 1.00673 1.21394 0.95539 0.97512 1.00136 1.21660 0.98934 0.96005 0.99537 1.21830 0.98890 1.00205 0.94019 1.19187 0.91012 0.91473 0.97860 0.95276 1.20779 1.40986 0.93990 0.95282 0.91043 1.24955 0.95336 0.97892 0.94884 1.69894 1.47987 1.15710 1.21211 0.87056 0.78817 0.80691 0.83970 1.20411 1.22052 1.19180 1.22118 0.93685 0.91312 1.00114 1.22152 0.95332 0.97465 0.92068 0.91778 0.91816 0.95676 0.93515 0.91187 0.90130 0.94794 0.92281 0.93193 0.93388 0.92412 0.93068 0.93380 0.92812 0.92885 0.93122 0.94954 0.90814 0.93780 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 60.07 0.58 0.90 16 2 N -0.55 -8.29 4.97 -242.75 -1.21 -9.49 16 3 C 0.06 0.94 5.62 -3.76 -0.02 0.92 16 4 C 0.06 1.11 4.73 -3.77 -0.02 1.09 16 5 N -0.51 -9.83 4.23 -226.49 -0.96 -10.79 16 6 C 0.10 2.04 1.62 -67.71 -0.11 1.94 16 7 H 0.07 1.44 8.01 -51.93 -0.42 1.02 16 8 C -0.15 -2.56 4.43 -26.73 -0.12 -2.68 16 9 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 10 C -0.12 -2.09 5.92 -26.73 -0.16 -2.25 16 11 C -0.11 -2.27 5.19 -26.73 -0.14 -2.41 16 12 C 0.02 0.54 1.11 -91.77 -0.10 0.44 16 13 H 0.03 0.68 3.69 -51.93 -0.19 0.49 16 14 C -0.47 -12.90 8.46 -34.44 -0.29 -13.19 16 15 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.91 -27.96 13.96 55.43 0.77 -27.18 16 18 Si 0.87 21.63 26.95 -169.99 -4.58 17.05 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.27 -6.36 6.84 56.52 0.39 -5.98 16 22 C 0.06 0.92 5.35 -3.77 -0.02 0.90 16 23 C 0.06 0.88 5.62 -3.77 -0.02 0.86 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.67 6.35 -51.93 -0.33 1.34 16 30 H 0.03 0.60 6.41 -51.93 -0.33 0.26 16 31 H 0.06 1.00 6.39 -51.93 -0.33 0.67 16 32 H 0.05 0.77 6.79 -51.93 -0.35 0.42 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.03 0.51 6.79 -51.93 -0.35 0.16 16 41 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 LS Contribution 314.87 15.07 4.75 4.75 Total: -1.00 -29.55 314.87 -9.70 -39.25 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.79 Total: -0.14 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.68 Total: -13.43 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -1.39 Total: -47.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.58 Total: 17.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.55 -9.70 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.112 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds