Wall clock time and date at job start Mon Mar 30 2020 04:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46957 * 110.99397 * 2 1 4 4 C 1.53055 * 109.36191 * 183.18478 * 3 2 1 5 5 N 1.46955 * 109.36602 * 301.59599 * 4 3 2 6 6 C 1.46895 * 111.00196 * 183.18526 * 5 4 3 7 7 H 1.08995 * 109.47172 * 187.13525 * 6 5 4 8 8 C 1.53001 * 109.47501 * 307.14043 * 6 5 4 9 9 C 1.53001 * 109.47436 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47026 * 300.00063 * 9 8 6 11 11 C 1.53005 * 109.47374 * 59.99831 * 10 9 8 12 12 C 1.52993 * 109.46976 * 300.00099 * 11 10 9 13 13 H 1.09006 * 109.47433 * 299.99764 * 12 11 10 14 14 C 1.50697 * 109.47301 * 180.02562 * 12 11 10 15 15 H 1.08006 * 120.00293 * 274.93785 * 14 12 11 16 16 C 1.37881 * 120.00380 * 94.92958 * 14 12 11 17 17 N 1.31510 * 120.00374 * 184.70608 * 16 14 12 18 18 Si 1.86801 * 119.99725 * 4.70761 * 16 14 12 19 19 H 1.48506 * 109.47007 * 84.50938 * 18 16 14 20 20 H 1.48497 * 109.46974 * 204.50964 * 18 16 14 21 21 H 1.48500 * 109.47157 * 324.50957 * 18 16 14 22 22 C 1.46958 * 110.87839 * 59.31972 * 5 4 3 23 23 C 1.46955 * 111.00087 * 123.79357 * 2 1 3 24 24 H 1.08994 * 109.46736 * 60.00605 * 1 2 3 25 25 H 1.09001 * 109.46589 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47586 * 299.99830 * 1 2 3 27 27 H 1.09005 * 109.49392 * 63.21905 * 3 2 1 28 28 H 1.08996 * 109.51110 * 303.15931 * 3 2 1 29 29 H 1.09005 * 109.48862 * 181.62912 * 4 3 2 30 30 H 1.08998 * 109.50459 * 61.57659 * 4 3 2 31 31 H 1.08996 * 109.46874 * 59.99306 * 8 6 5 32 32 H 1.08997 * 109.46712 * 299.99929 * 8 6 5 33 33 H 1.08995 * 109.47013 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46900 * 59.99654 * 9 8 6 35 35 H 1.08995 * 109.47464 * 299.99598 * 10 9 8 36 36 H 1.09000 * 109.47347 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.46818 * 60.00250 * 11 10 9 38 38 H 1.08997 * 109.47022 * 179.97438 * 11 10 9 39 39 H 0.97000 * 120.00307 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.49067 * 60.64654 * 22 5 4 41 41 H 1.09002 * 109.49067 * 180.71177 * 22 5 4 42 42 H 1.09000 * 109.49352 * 296.78555 * 23 2 1 43 43 H 1.09005 * 109.48804 * 56.84951 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0802 5 7 4.0500 0.5662 1.0599 6 6 5.5190 0.5662 1.0600 7 1 5.8823 -0.1070 1.8364 8 6 6.0291 0.0950 -0.3034 9 6 7.5592 0.0956 -0.3035 10 6 8.0685 1.5122 -0.0301 11 6 7.5584 1.9834 1.3332 12 6 6.0285 1.9827 1.3333 13 1 5.6648 2.6558 0.5569 14 6 5.5260 2.4475 2.6759 15 1 5.4222 1.7423 3.4874 16 6 5.1989 3.7730 2.8686 17 7 4.8491 4.1971 4.0632 18 14 5.2525 4.9664 1.4325 19 1 3.9726 4.8963 0.6825 20 1 5.4521 6.3465 1.9430 21 1 6.3753 4.6052 0.5303 22 6 3.5235 -0.8058 1.0600 23 6 1.9957 -0.7631 1.1401 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6936 1.8775 0.9173 28 1 1.6013 1.9132 -0.8601 29 1 3.9177 2.3450 -0.0512 30 1 3.8256 0.8483 -1.0105 31 1 5.6657 0.7682 -1.0797 32 1 5.6658 -0.9140 -0.4983 33 1 7.9225 -0.2404 -1.2746 34 1 7.9228 -0.5774 0.4730 35 1 7.7050 2.1852 -0.8065 36 1 9.1585 1.5126 -0.0298 37 1 7.9222 1.3104 2.1096 38 1 7.9218 2.9924 1.5282 39 1 4.6193 5.1297 4.1988 40 1 3.8254 -1.3113 0.1426 41 1 3.9178 -1.3467 1.9203 42 1 1.6937 -0.2820 2.0704 43 1 1.6014 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:45 Heat of formation + Delta-G solvation = -19.410359 kcal Electronic energy + Delta-G solvation = -20491.654726 eV Core-core repulsion = 17763.198726 eV Total energy + Delta-G solvation = -2728.456000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90652 -38.77110 -35.62707 -34.70049 -32.06828 -31.73622 -30.87055 -28.16882 -26.33885 -24.78137 -24.51815 -22.98724 -22.05812 -20.83958 -19.81093 -18.82273 -17.38390 -16.51625 -16.04008 -15.88964 -15.75642 -15.56002 -15.15179 -14.97680 -14.62191 -14.54178 -14.40934 -13.73175 -13.40313 -13.16953 -12.96262 -12.92135 -12.56866 -12.45963 -12.39227 -12.32667 -11.90833 -11.83783 -11.71368 -11.63237 -11.48554 -11.19687 -10.75297 -10.65217 -10.50390 -9.38532 -8.78643 -8.15477 -6.10987 1.33317 1.34602 1.43954 2.41449 2.98547 3.10746 3.26655 3.88613 3.95406 4.12870 4.14897 4.19370 4.24347 4.33928 4.41481 4.50537 4.56410 4.61970 4.65598 4.69530 4.71523 4.76899 4.86975 4.91209 4.92508 4.96265 4.98520 5.04983 5.10485 5.18814 5.29394 5.33642 5.36363 5.46992 5.63654 5.71974 5.85542 5.99451 6.07262 6.42605 6.46859 6.55714 6.92133 7.49506 9.03156 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.009892 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.168453 B = 2830.031951 C = 3785.901718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.060 3.940 4 C 0.064 3.936 5 N -0.538 5.538 6 C 0.109 3.891 7 H 0.057 0.943 8 C -0.144 4.144 9 C -0.104 4.104 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.024 3.976 13 H 0.025 0.975 14 C -0.461 4.461 15 H 0.024 0.976 16 C 0.008 3.992 17 N -0.961 5.961 18 Si 0.927 3.073 19 H -0.270 1.270 20 H -0.297 1.297 21 H -0.246 1.246 22 C 0.059 3.941 23 C 0.060 3.940 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.034 0.966 39 H 0.257 0.743 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -10.068 -12.861 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.064 4.064 5 N -0.262 5.262 6 C 0.001 3.999 7 H 0.075 0.925 8 C -0.183 4.183 9 C -0.142 4.142 10 C -0.155 4.155 11 C -0.150 4.150 12 C 0.004 3.996 13 H 0.043 0.957 14 C -0.499 4.499 15 H 0.042 0.958 16 C -0.187 4.187 17 N -0.604 5.604 18 Si 0.753 3.247 19 H -0.195 1.195 20 H -0.224 1.224 21 H -0.169 1.169 22 C -0.069 4.069 23 C -0.068 4.068 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.404 -9.926 -12.761 16.344 hybrid contribution -0.224 1.191 0.393 1.274 sum -2.627 -8.735 -12.368 15.368 Atomic orbital electron populations 1.22417 0.86068 1.03015 1.00775 1.62265 1.08903 1.13130 1.42574 1.22126 0.94809 0.89817 1.00124 1.22031 0.94066 0.97996 0.92354 1.62117 1.08158 1.13268 1.42623 1.21549 0.85684 0.97369 0.95340 0.92491 1.22195 0.97168 1.00958 0.98010 1.21402 0.94350 0.96440 1.02043 1.21595 1.00388 0.97005 0.96500 1.21716 0.97151 0.99332 0.96789 1.19167 0.92458 0.93417 0.94523 0.95662 1.21009 1.39555 0.92946 0.96391 0.95759 1.25738 0.95624 0.99981 0.97330 1.70066 1.50610 1.16037 1.23714 0.86060 0.79796 0.77897 0.80990 1.19517 1.22445 1.16930 1.22143 0.94393 0.89658 1.00722 1.22174 0.94689 0.98841 0.91079 0.90324 0.89652 0.96525 0.96727 0.89155 0.92849 0.93154 0.92303 0.91395 0.90279 0.91932 0.92925 0.91010 0.93372 0.94740 0.93394 0.93466 0.90924 0.96307 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 127.69 1.23 1.78 16 2 N -0.54 -15.37 4.97 -921.94 -4.58 -19.95 16 3 C 0.06 1.96 5.62 86.31 0.49 2.45 16 4 C 0.06 2.30 4.73 86.31 0.41 2.71 16 5 N -0.54 -20.83 4.23 -870.47 -3.68 -24.51 16 6 C 0.11 4.19 1.62 44.92 0.07 4.26 16 7 H 0.06 2.31 8.01 -2.39 -0.02 2.30 16 8 C -0.14 -4.33 4.43 30.60 0.14 -4.19 16 9 C -0.10 -2.79 5.92 30.59 0.18 -2.60 16 10 C -0.12 -3.60 5.92 30.59 0.18 -3.42 16 11 C -0.11 -4.49 5.19 30.59 0.16 -4.33 16 12 C 0.02 1.06 1.11 -11.54 -0.01 1.05 16 13 H 0.03 1.17 3.69 -2.38 -0.01 1.16 16 14 C -0.46 -26.25 8.46 25.60 0.22 -26.04 16 15 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 16 C 0.01 0.45 5.47 84.66 0.46 0.91 16 17 N -0.96 -62.09 13.96 21.45 0.30 -61.79 16 18 Si 0.93 45.58 26.95 68.60 1.85 47.43 16 19 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 21 H -0.25 -11.11 6.84 99.48 0.68 -10.43 16 22 C 0.06 1.85 5.35 86.31 0.46 2.31 16 23 C 0.06 1.74 5.62 86.31 0.49 2.23 16 24 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 26 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.05 2.19 6.35 -2.38 -0.02 2.17 16 30 H 0.05 1.64 6.41 -2.39 -0.02 1.62 16 31 H 0.06 1.79 6.39 -2.39 -0.02 1.78 16 32 H 0.07 1.83 6.79 -2.39 -0.02 1.81 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.05 1.35 6.79 -2.38 -0.02 1.34 16 41 H 0.07 2.25 8.06 -2.39 -0.02 2.23 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 2.29 8.13 -2.38 -0.02 2.27 16 Total: -1.00 -67.02 314.87 -0.73 -67.75 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.92 Total: 13.96 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 4.46 Total: -22.89 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -7.96 Total: -106.25 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.85 Total: 47.43 kcal Total: -67.02 -0.73 -67.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.338 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds