Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46963 * 111.00014 * 2 1 4 4 C 1.53048 * 109.36590 * 183.18569 * 3 2 1 5 5 N 1.46966 * 109.36053 * 301.59679 * 4 3 2 6 6 C 1.46898 * 110.99629 * 183.18925 * 5 4 3 7 7 H 1.09004 * 109.47509 * 54.99899 * 6 5 4 8 8 C 1.53000 * 109.47401 * 294.99728 * 6 5 4 9 9 C 1.52997 * 109.47653 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46627 * 59.99928 * 9 8 6 11 11 C 1.52999 * 109.47526 * 299.99964 * 10 9 8 12 12 C 1.52996 * 109.47203 * 174.99910 * 6 5 4 13 13 H 1.09004 * 109.46898 * 59.99614 * 12 6 5 14 14 C 1.50704 * 109.47272 * 300.00103 * 12 6 5 15 15 H 1.08008 * 119.99353 * 335.21177 * 14 12 6 16 16 C 1.37866 * 120.00279 * 155.21056 * 14 12 6 17 17 N 1.31518 * 120.00325 * 355.16841 * 16 14 12 18 18 Si 1.86799 * 119.99943 * 175.16715 * 16 14 12 19 19 H 1.48498 * 109.47516 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47121 * 120.00314 * 18 16 14 21 21 H 1.48503 * 109.47180 * 239.99969 * 18 16 14 22 22 C 1.46955 * 110.88103 * 59.32372 * 5 4 3 23 23 C 1.46955 * 110.99765 * 123.79278 * 2 1 3 24 24 H 1.09000 * 109.46773 * 60.00484 * 1 2 3 25 25 H 1.09001 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47503 * 300.00388 * 1 2 3 27 27 H 1.08994 * 109.49131 * 63.21217 * 3 2 1 28 28 H 1.09001 * 109.48312 * 303.14875 * 3 2 1 29 29 H 1.08997 * 109.49253 * 181.62941 * 4 3 2 30 30 H 1.09003 * 109.50925 * 61.56956 * 4 3 2 31 31 H 1.09004 * 109.46929 * 300.00526 * 8 6 5 32 32 H 1.09001 * 109.47112 * 59.99658 * 8 6 5 33 33 H 1.09001 * 109.47149 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47037 * 300.00264 * 9 8 6 35 35 H 1.08996 * 109.47138 * 60.00398 * 10 9 8 36 36 H 1.09002 * 109.46775 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47266 * 300.00355 * 11 10 9 38 38 H 1.08998 * 109.47010 * 180.02562 * 11 10 9 39 39 H 0.97005 * 119.99322 * 5.18393 * 17 16 14 40 40 H 1.08994 * 109.49014 * 60.64243 * 22 5 4 41 41 H 1.09002 * 109.48855 * 180.71502 * 22 5 4 42 42 H 1.09002 * 109.49047 * 296.78160 * 23 2 1 43 43 H 1.09001 * 109.48991 * 56.82619 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3292 -0.0802 5 7 4.0500 0.5660 1.0600 6 6 5.5190 0.5660 1.0601 7 1 5.8824 1.5935 1.0385 8 6 6.0292 -0.1813 -0.1736 9 6 7.5591 -0.1819 -0.1733 10 6 8.0685 -0.8770 1.0909 11 6 7.5584 -0.1297 2.3247 12 6 6.0290 -0.1288 2.3242 13 1 5.6656 -1.1562 2.3458 14 6 5.5265 0.6073 3.5395 15 1 5.2664 1.6531 3.4681 16 6 5.3990 -0.0543 4.7423 17 7 5.6243 -1.3483 4.8083 18 14 4.9060 0.8874 6.2785 19 1 4.7123 2.3202 5.9400 20 1 3.6390 0.3295 6.8159 21 1 5.9755 0.7611 7.3010 22 6 3.5234 -0.8060 1.0600 23 6 1.9956 -0.7631 1.1402 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6937 1.8775 0.9172 28 1 1.6014 1.9128 -0.8604 29 1 3.9178 2.3449 -0.0512 30 1 3.8258 0.8481 -1.0105 31 1 5.6658 -1.2088 -0.1521 32 1 5.6658 0.3136 -1.0743 33 1 7.9225 -0.7147 -1.0520 34 1 7.9228 0.8454 -0.1946 35 1 7.7048 -1.9043 1.1123 36 1 9.1585 -0.8778 1.0910 37 1 7.9221 0.8976 2.3034 38 1 7.9217 -0.6247 3.2253 39 1 5.9527 -1.8237 4.0291 40 1 3.8254 -1.3114 0.1427 41 1 3.9176 -1.3468 1.9204 42 1 1.6937 -0.2818 2.0704 43 1 1.6010 -1.7787 1.1114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -4.909730 kcal Electronic energy + Delta-G solvation = -20438.416703 eV Core-core repulsion = 17710.589497 eV Total energy + Delta-G solvation = -2727.827206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44818 -37.37766 -34.24657 -32.99938 -30.53135 -29.47002 -29.36145 -26.63974 -24.15397 -23.42794 -23.23967 -21.46494 -20.74546 -19.48733 -18.33652 -16.68716 -15.84770 -14.83673 -14.57842 -14.43280 -14.31658 -13.86507 -13.66330 -13.58464 -13.41837 -13.02383 -12.45320 -12.18922 -11.89495 -11.75745 -11.43673 -11.23389 -11.01544 -10.94617 -10.70324 -10.57902 -10.51489 -10.17597 -10.12495 -10.04287 -9.97313 -9.57008 -8.93043 -8.34260 -8.15390 -8.11321 -7.34057 -6.16979 -3.82957 3.51662 3.54446 3.68742 4.18250 4.58047 4.65053 5.22941 5.25236 5.35915 5.45989 5.51862 5.53960 5.56313 5.63240 5.68012 5.81793 5.85882 5.90363 5.94027 5.99546 6.09488 6.17078 6.19721 6.23990 6.31489 6.33916 6.44669 6.53847 6.59234 6.64782 6.77546 6.86648 6.98754 7.15121 7.23576 7.26664 7.44359 7.63092 7.90872 8.03654 8.43407 8.66662 9.07312 9.83842 11.21540 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.009639 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.394865 B = 2904.201567 C = 4158.487199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.060 3.940 4 C 0.053 3.947 5 N -0.507 5.507 6 C 0.105 3.895 7 H 0.065 0.935 8 C -0.153 4.153 9 C -0.107 4.107 10 C -0.122 4.122 11 C -0.108 4.108 12 C 0.039 3.961 13 H 0.033 0.967 14 C -0.556 4.556 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.924 5.924 18 Si 1.067 2.933 19 H -0.291 1.291 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.062 3.938 23 C 0.058 3.942 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.024 0.976 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.267 0.733 40 H 0.029 0.971 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 2.503 -10.259 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.069 4.069 4 C -0.076 4.076 5 N -0.229 5.229 6 C -0.003 4.003 7 H 0.083 0.917 8 C -0.192 4.192 9 C -0.145 4.145 10 C -0.160 4.160 11 C -0.147 4.147 12 C 0.021 3.979 13 H 0.051 0.949 14 C -0.595 4.595 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.562 5.562 18 Si 0.898 3.102 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.066 4.066 23 C -0.070 4.070 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.579 2.346 -8.632 10.049 hybrid contribution 0.346 0.213 -1.660 1.709 sum -4.234 2.559 -10.292 11.419 Atomic orbital electron populations 1.22313 0.88042 1.01647 1.00218 1.62209 1.07128 1.14159 1.43649 1.22131 0.95332 0.89113 1.00289 1.22138 0.93664 0.98650 0.93106 1.62240 1.08134 1.13021 1.39536 1.21740 0.85133 0.98887 0.94570 0.91700 1.22296 0.96122 1.01270 0.99552 1.21390 0.95576 1.00159 0.97403 1.21645 0.98693 0.99519 0.96102 1.21740 0.99513 0.98328 0.95111 1.18915 0.90349 0.96521 0.92162 0.94905 1.21797 1.45530 0.98043 0.94115 0.93369 1.25606 0.95533 0.96387 1.01101 1.70751 1.43909 1.07610 1.33975 0.83568 0.76423 0.74732 0.75525 1.21750 1.21780 1.21847 1.22112 0.92854 0.90779 1.00891 1.22190 0.95769 0.97475 0.91544 0.91877 0.91712 0.95778 0.94066 0.91273 0.91141 0.94862 0.92358 0.93392 0.93494 0.92669 0.92972 0.93673 0.93705 0.92767 0.92166 0.95263 0.88996 0.93724 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.60 60.07 0.58 0.90 16 2 N -0.55 -8.40 4.97 -242.75 -1.21 -9.61 16 3 C 0.06 0.90 5.62 -3.76 -0.02 0.88 16 4 C 0.05 0.88 5.25 -3.76 -0.02 0.86 16 5 N -0.51 -10.05 4.27 -226.49 -0.97 -11.01 16 6 C 0.10 2.13 1.66 -67.72 -0.11 2.02 16 7 H 0.06 1.38 8.11 -51.93 -0.42 0.95 16 8 C -0.15 -2.70 4.50 -26.73 -0.12 -2.82 16 9 C -0.11 -1.76 5.92 -26.73 -0.16 -1.92 16 10 C -0.12 -2.22 5.92 -26.73 -0.16 -2.37 16 11 C -0.11 -2.37 5.18 -26.76 -0.14 -2.51 16 12 C 0.04 0.93 1.02 -91.80 -0.09 0.83 16 13 H 0.03 0.85 4.89 -51.93 -0.25 0.59 16 14 C -0.56 -15.02 7.91 -34.44 -0.27 -15.29 16 15 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 16 C 0.02 0.45 5.45 -17.82 -0.10 0.35 16 17 N -0.92 -27.27 13.63 55.43 0.76 -26.52 16 18 Si 1.07 25.70 29.91 -169.99 -5.08 20.62 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.06 1.20 4.81 -3.77 -0.02 1.18 16 23 C 0.06 1.00 5.62 -3.77 -0.02 0.98 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 30 H 0.03 0.55 6.60 -51.93 -0.34 0.21 16 31 H 0.06 1.07 6.46 -51.93 -0.34 0.73 16 32 H 0.05 0.79 6.59 -51.93 -0.34 0.44 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.27 7.82 6.66 -40.82 -0.27 7.55 16 40 H 0.03 0.55 6.46 -51.93 -0.34 0.22 16 41 H 0.09 2.07 6.17 -51.93 -0.32 1.75 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -28.61 316.28 -10.14 -38.75 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.75 Total: -0.10 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -0.66 Total: -16.90 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.42 Total: -47.14 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.61 -10.14 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.837 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds