Wall clock time and date at job start Mon Mar 30 2020 04:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46963 * 111.00014 * 2 1 4 4 C 1.53048 * 109.36590 * 183.18569 * 3 2 1 5 5 N 1.46966 * 109.36053 * 301.59679 * 4 3 2 6 6 C 1.46898 * 110.99629 * 183.18925 * 5 4 3 7 7 H 1.09004 * 109.47509 * 54.99899 * 6 5 4 8 8 C 1.53000 * 109.47401 * 294.99728 * 6 5 4 9 9 C 1.52997 * 109.47653 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46627 * 59.99928 * 9 8 6 11 11 C 1.52999 * 109.47526 * 299.99964 * 10 9 8 12 12 C 1.52996 * 109.47203 * 174.99910 * 6 5 4 13 13 H 1.09004 * 109.46898 * 59.99614 * 12 6 5 14 14 C 1.50704 * 109.47272 * 300.00103 * 12 6 5 15 15 H 1.08008 * 119.99353 * 335.21177 * 14 12 6 16 16 C 1.37866 * 120.00279 * 155.21056 * 14 12 6 17 17 N 1.31518 * 120.00325 * 355.16841 * 16 14 12 18 18 Si 1.86799 * 119.99943 * 175.16715 * 16 14 12 19 19 H 1.48498 * 109.47516 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47121 * 120.00314 * 18 16 14 21 21 H 1.48503 * 109.47180 * 239.99969 * 18 16 14 22 22 C 1.46955 * 110.88103 * 59.32372 * 5 4 3 23 23 C 1.46955 * 110.99765 * 123.79278 * 2 1 3 24 24 H 1.09000 * 109.46773 * 60.00484 * 1 2 3 25 25 H 1.09001 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47503 * 300.00388 * 1 2 3 27 27 H 1.08994 * 109.49131 * 63.21217 * 3 2 1 28 28 H 1.09001 * 109.48312 * 303.14875 * 3 2 1 29 29 H 1.08997 * 109.49253 * 181.62941 * 4 3 2 30 30 H 1.09003 * 109.50925 * 61.56956 * 4 3 2 31 31 H 1.09004 * 109.46929 * 300.00526 * 8 6 5 32 32 H 1.09001 * 109.47112 * 59.99658 * 8 6 5 33 33 H 1.09001 * 109.47149 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.47037 * 300.00264 * 9 8 6 35 35 H 1.08996 * 109.47138 * 60.00398 * 10 9 8 36 36 H 1.09002 * 109.46775 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47266 * 300.00355 * 11 10 9 38 38 H 1.08998 * 109.47010 * 180.02562 * 11 10 9 39 39 H 0.97005 * 119.99322 * 5.18393 * 17 16 14 40 40 H 1.08994 * 109.49014 * 60.64243 * 22 5 4 41 41 H 1.09002 * 109.48855 * 180.71502 * 22 5 4 42 42 H 1.09002 * 109.49047 * 296.78160 * 23 2 1 43 43 H 1.09001 * 109.48991 * 56.82619 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3292 -0.0802 5 7 4.0500 0.5660 1.0600 6 6 5.5190 0.5660 1.0601 7 1 5.8824 1.5935 1.0385 8 6 6.0292 -0.1813 -0.1736 9 6 7.5591 -0.1819 -0.1733 10 6 8.0685 -0.8770 1.0909 11 6 7.5584 -0.1297 2.3247 12 6 6.0290 -0.1288 2.3242 13 1 5.6656 -1.1562 2.3458 14 6 5.5265 0.6073 3.5395 15 1 5.2664 1.6531 3.4681 16 6 5.3990 -0.0543 4.7423 17 7 5.6243 -1.3483 4.8083 18 14 4.9060 0.8874 6.2785 19 1 4.7123 2.3202 5.9400 20 1 3.6390 0.3295 6.8159 21 1 5.9755 0.7611 7.3010 22 6 3.5234 -0.8060 1.0600 23 6 1.9956 -0.7631 1.1402 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6937 1.8775 0.9172 28 1 1.6014 1.9128 -0.8604 29 1 3.9178 2.3449 -0.0512 30 1 3.8258 0.8481 -1.0105 31 1 5.6658 -1.2088 -0.1521 32 1 5.6658 0.3136 -1.0743 33 1 7.9225 -0.7147 -1.0520 34 1 7.9228 0.8454 -0.1946 35 1 7.7048 -1.9043 1.1123 36 1 9.1585 -0.8778 1.0910 37 1 7.9221 0.8976 2.3034 38 1 7.9217 -0.6247 3.2253 39 1 5.9527 -1.8237 4.0291 40 1 3.8254 -1.3114 0.1427 41 1 3.9176 -1.3468 1.9204 42 1 1.6937 -0.2818 2.0704 43 1 1.6010 -1.7787 1.1114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:48 Heat of formation + Delta-G solvation = -23.278808 kcal Electronic energy + Delta-G solvation = -20439.213246 eV Core-core repulsion = 17710.589497 eV Total energy + Delta-G solvation = -2728.623749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95007 -38.81426 -35.69324 -34.96703 -31.92419 -31.13300 -30.91034 -28.02056 -26.11481 -24.81090 -24.59056 -23.10177 -22.30446 -21.00511 -19.88571 -18.69862 -17.29170 -16.14780 -15.92916 -15.84478 -15.71957 -15.63275 -15.55561 -15.06433 -14.95361 -14.48637 -13.90905 -13.50769 -13.38714 -13.17786 -13.10964 -12.77533 -12.59902 -12.51468 -12.35347 -12.04177 -12.01427 -11.94292 -11.76131 -11.60984 -11.52508 -11.25989 -10.66260 -10.38201 -10.23269 -9.38599 -8.85662 -8.41289 -6.06186 1.52222 1.60326 1.76266 2.63299 2.97321 3.10484 3.38322 3.84861 3.91774 4.09539 4.12406 4.16387 4.17447 4.29833 4.38702 4.44562 4.55435 4.60157 4.63914 4.65515 4.70224 4.74623 4.83641 4.86802 4.91845 4.94143 4.97862 5.01097 5.06541 5.17633 5.23246 5.29408 5.34133 5.44130 5.63598 5.76234 5.98246 6.06948 6.27679 6.41180 6.43455 6.51100 6.88510 7.66607 8.97615 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.009639 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.394865 B = 2904.201567 C = 4158.487199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.532 5.532 6 C 0.111 3.889 7 H 0.057 0.943 8 C -0.143 4.143 9 C -0.102 4.102 10 C -0.115 4.115 11 C -0.103 4.103 12 C 0.039 3.961 13 H 0.006 0.994 14 C -0.555 4.555 15 H 0.032 0.968 16 C -0.034 4.034 17 N -0.950 5.950 18 Si 1.106 2.894 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.285 1.285 22 C 0.072 3.928 23 C 0.065 3.935 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.025 0.975 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.020 0.980 39 H 0.256 0.744 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 3.470 -12.453 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.066 4.066 4 C -0.073 4.073 5 N -0.255 5.255 6 C 0.002 3.998 7 H 0.075 0.925 8 C -0.182 4.182 9 C -0.140 4.140 10 C -0.153 4.153 11 C -0.142 4.142 12 C 0.020 3.980 13 H 0.024 0.976 14 C -0.594 4.594 15 H 0.051 0.949 16 C -0.230 4.230 17 N -0.589 5.589 18 Si 0.932 3.068 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.056 4.056 23 C -0.063 4.063 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.065 3.325 -10.848 12.425 hybrid contribution 0.475 -0.059 -0.999 1.107 sum -4.590 3.266 -11.847 13.118 Atomic orbital electron populations 1.22411 0.85894 1.02729 1.01162 1.62241 1.09042 1.14021 1.41992 1.22170 0.94334 0.89188 1.00925 1.22205 0.94710 0.98420 0.92008 1.62155 1.07923 1.13490 1.41917 1.21524 0.85880 0.98141 0.94238 0.92522 1.22173 0.97117 1.00306 0.98654 1.21383 0.94427 1.00916 0.97278 1.21563 1.00032 0.98594 0.95105 1.21576 0.98249 0.98486 0.95896 1.18851 0.91419 0.94882 0.92833 0.97584 1.22046 1.44430 0.97318 0.95557 0.94920 1.26760 0.95678 0.96521 1.04068 1.70853 1.46030 1.08480 1.33585 0.83051 0.76380 0.74379 0.73040 1.20365 1.21449 1.21096 1.21890 0.94213 0.90371 0.99137 1.22054 0.94351 0.98490 0.91413 0.89564 0.90689 0.96083 0.95640 0.88064 0.90435 0.94001 0.93346 0.91309 0.90453 0.91693 0.93773 0.91405 0.93733 0.96066 0.93388 0.94622 0.93305 0.96197 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.60 127.69 1.23 1.80 16 2 N -0.55 -15.74 4.97 -921.93 -4.58 -20.32 16 3 C 0.06 1.74 5.62 86.31 0.49 2.23 16 4 C 0.05 1.72 5.25 86.31 0.45 2.17 16 5 N -0.53 -21.08 4.27 -870.47 -3.72 -24.80 16 6 C 0.11 4.48 1.66 44.91 0.07 4.56 16 7 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 8 C -0.14 -4.78 4.50 30.59 0.14 -4.65 16 9 C -0.10 -3.07 5.92 30.59 0.18 -2.89 16 10 C -0.12 -4.06 5.92 30.59 0.18 -3.88 16 11 C -0.10 -4.61 5.18 30.58 0.16 -4.45 16 12 C 0.04 1.90 1.02 -11.56 -0.01 1.89 16 13 H 0.01 0.33 4.89 -2.39 -0.01 0.32 16 14 C -0.55 -30.97 7.91 25.60 0.20 -30.77 16 15 H 0.03 1.88 7.81 -2.91 -0.02 1.86 16 16 C -0.03 -1.95 5.45 84.65 0.46 -1.49 16 17 N -0.95 -58.34 13.63 21.44 0.29 -58.05 16 18 Si 1.11 52.81 29.91 68.60 2.05 54.86 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 C 0.07 2.84 4.81 86.31 0.42 3.26 16 23 C 0.07 2.24 5.62 86.31 0.49 2.72 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 26 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.31 8.12 -2.39 -0.02 2.29 16 30 H 0.04 1.26 6.60 -2.39 -0.02 1.24 16 31 H 0.05 1.72 6.46 -2.39 -0.02 1.70 16 32 H 0.07 2.03 6.59 -2.39 -0.02 2.02 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.26 15.84 6.66 -92.70 -0.62 15.23 16 40 H 0.04 1.34 6.46 -2.39 -0.02 1.32 16 41 H 0.05 2.33 6.17 -2.39 -0.01 2.31 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 Total: -1.00 -63.78 316.28 -0.41 -64.19 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.10 Total: 13.63 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 4.45 Total: -29.51 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -8.01 Total: -103.17 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 2.05 Total: 54.86 kcal Total: -63.78 -0.41 -64.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.911 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds