Wall clock time and date at job start Mon Mar 30 2020 04:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46954 * 111.00072 * 2 1 4 4 C 1.53047 * 109.36790 * 183.18574 * 3 2 1 5 5 N 1.46957 * 109.36543 * 301.60413 * 4 3 2 6 6 C 1.46908 * 110.99894 * 183.18671 * 5 4 3 7 7 H 1.08994 * 109.47162 * 299.99472 * 6 5 4 8 8 C 1.52998 * 109.46799 * 59.99643 * 6 5 4 9 9 C 1.53010 * 109.46641 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47146 * 300.00133 * 9 8 6 11 11 C 1.53000 * 109.47166 * 59.99909 * 10 9 8 12 12 C 1.52996 * 109.47253 * 300.00041 * 11 10 9 13 13 H 1.08994 * 109.47269 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46842 * 300.00059 * 12 11 10 15 15 H 1.08002 * 120.00299 * 120.00437 * 14 12 11 16 16 C 1.37884 * 119.99942 * 299.71996 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46954 * 110.88250 * 59.31434 * 5 4 3 23 23 C 1.46957 * 111.00007 * 123.80282 * 2 1 3 24 24 H 1.09000 * 109.46775 * 60.00499 * 1 2 3 25 25 H 1.08999 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46937 * 299.99804 * 1 2 3 27 27 H 1.09002 * 109.49142 * 63.21873 * 3 2 1 28 28 H 1.09002 * 109.50825 * 303.16552 * 3 2 1 29 29 H 1.08995 * 109.49277 * 181.63137 * 4 3 2 30 30 H 1.09008 * 109.50530 * 61.58056 * 4 3 2 31 31 H 1.09003 * 109.47277 * 60.00214 * 8 6 5 32 32 H 1.09001 * 109.47486 * 299.99687 * 8 6 5 33 33 H 1.09000 * 109.46753 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46863 * 60.00263 * 9 8 6 35 35 H 1.09003 * 109.47345 * 299.99835 * 10 9 8 36 36 H 1.09004 * 109.47066 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47192 * 179.97438 * 11 10 9 38 38 H 1.09003 * 109.47049 * 59.99744 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.48693 * 60.65408 * 22 5 4 41 41 H 1.09006 * 109.48754 * 180.71093 * 22 5 4 42 42 H 1.09001 * 109.48548 * 296.77439 * 23 2 1 43 43 H 1.08999 * 109.49490 * 56.81908 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0802 5 7 4.0501 0.5658 1.0598 6 6 5.5192 0.5659 1.0598 7 1 5.8825 0.1122 0.1378 8 6 6.0290 2.0052 1.1554 9 6 7.5591 2.0052 1.1561 10 6 8.0686 1.2029 2.3550 11 6 7.5586 -0.2364 2.2594 12 6 6.0286 -0.2364 2.2588 13 1 5.6653 -1.2618 2.1911 14 6 5.5258 0.3911 3.5334 15 1 4.9049 1.2738 3.4924 16 6 5.8537 -0.1651 4.7517 17 7 6.6098 -1.2400 4.8016 18 14 5.2241 0.6082 6.3312 19 1 4.4000 1.7996 6.0048 20 1 4.3960 -0.3788 7.0697 21 1 6.3754 1.0183 7.1748 22 6 3.5234 -0.8061 1.0598 23 6 1.9957 -0.7633 1.1400 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6938 1.8774 0.9173 28 1 1.6014 1.9132 -0.8601 29 1 3.9178 2.3448 -0.0512 30 1 3.8257 0.8482 -1.0106 31 1 5.6657 2.4590 2.0775 32 1 5.6657 2.5769 0.3014 33 1 7.9224 3.0307 1.2237 34 1 7.9228 1.5514 0.2341 35 1 7.7049 1.6568 3.2769 36 1 9.1586 1.2025 2.3552 37 1 7.9219 -0.8081 3.1134 38 1 7.9223 -0.6902 1.3375 39 1 6.8408 -1.6311 5.6587 40 1 3.8254 -1.3115 0.1425 41 1 3.9178 -1.3470 1.9201 42 1 1.6938 -0.2821 2.0703 43 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259695604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:53 Heat of formation + Delta-G solvation = 2.404761 kcal Electronic energy + Delta-G solvation = -20429.825884 eV Core-core repulsion = 17702.315858 eV Total energy + Delta-G solvation = -2727.510026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.23092 -37.32886 -34.21320 -32.50458 -30.65320 -29.43549 -29.10060 -26.70375 -24.62853 -23.41538 -23.18103 -20.76910 -20.62506 -19.21243 -18.57545 -16.01730 -15.53032 -14.83034 -14.68085 -14.55377 -14.30322 -14.04859 -13.78598 -13.44109 -12.88850 -12.72342 -12.26236 -12.02196 -11.87265 -11.70397 -11.55005 -11.07891 -10.96447 -10.84612 -10.69136 -10.49418 -10.29330 -10.16843 -10.08473 -9.94135 -9.56934 -9.13459 -8.80344 -8.54267 -8.14405 -8.12178 -7.42219 -5.84996 -3.84714 3.36072 3.44954 3.49791 4.18118 4.54283 4.59710 5.24008 5.27865 5.46464 5.48673 5.54719 5.65089 5.75029 5.79955 5.83178 5.88428 5.91132 5.95685 6.01925 6.13716 6.27554 6.28761 6.44455 6.51606 6.55040 6.62622 6.64071 6.71618 6.80676 6.87621 7.12566 7.18632 7.24335 7.27294 7.50927 7.55862 7.81067 7.85900 7.95056 8.08395 8.29049 8.64483 9.18591 9.76286 11.21783 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.008481 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.567687 B = 3300.819980 C = 4131.684653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.060 3.940 4 C 0.052 3.948 5 N -0.515 5.515 6 C 0.100 3.900 7 H 0.010 0.990 8 C -0.101 4.101 9 C -0.110 4.110 10 C -0.103 4.103 11 C -0.109 4.109 12 C 0.052 3.948 13 H 0.026 0.974 14 C -0.470 4.470 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.062 3.938 23 C 0.059 3.941 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.092 0.908 38 H 0.010 0.990 39 H 0.255 0.745 40 H 0.025 0.975 41 H 0.100 0.900 42 H 0.043 0.957 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 3.576 -8.545 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.068 4.068 4 C -0.077 4.077 5 N -0.240 5.240 6 C -0.008 4.008 7 H 0.028 0.972 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.148 4.148 12 C 0.034 3.966 13 H 0.044 0.956 14 C -0.509 4.509 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.711 3.289 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.067 4.067 23 C -0.069 4.069 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.111 0.889 38 H 0.029 0.971 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.925 3.461 -8.411 10.855 hybrid contribution -0.369 0.355 0.897 1.033 sum -6.294 3.816 -7.514 10.519 Atomic orbital electron populations 1.22312 0.88090 1.01625 1.00182 1.62204 1.07079 1.14227 1.43728 1.22134 0.95431 0.89045 1.00215 1.22180 0.93506 0.99212 0.92763 1.62058 1.08820 1.13139 1.39956 1.21715 0.84746 0.96461 0.97862 0.97184 1.21503 0.94864 0.96335 1.01138 1.21459 0.95924 0.98745 0.98663 1.21385 0.96923 0.97680 0.98104 1.21534 0.98559 0.94973 0.99698 1.18790 0.91566 0.94635 0.91642 0.95637 1.21109 1.28735 1.11517 0.89505 0.91871 1.24934 0.95703 0.95189 0.98662 1.69883 1.37990 1.21494 1.24578 0.86689 0.78519 0.79345 0.84344 1.19946 1.21527 1.21510 1.22134 0.92714 0.90570 1.01243 1.22199 0.95839 0.97455 0.91433 0.91894 0.91718 0.95852 0.94152 0.91314 0.90543 0.95327 0.90340 0.94566 0.93666 0.93854 0.91035 0.95110 0.88934 0.97092 0.93513 0.95680 0.88233 0.93834 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 60.06 0.58 0.89 16 2 N -0.55 -8.20 4.97 -242.76 -1.21 -9.40 16 3 C 0.06 0.89 5.62 -3.77 -0.02 0.87 16 4 C 0.05 0.86 5.32 -3.77 -0.02 0.84 16 5 N -0.52 -9.98 4.10 -226.49 -0.93 -10.90 16 6 C 0.10 2.04 1.61 -67.71 -0.11 1.93 16 7 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 8 C -0.10 -1.91 4.75 -26.73 -0.13 -2.04 16 9 C -0.11 -2.00 5.92 -26.73 -0.16 -2.16 16 10 C -0.10 -2.16 5.70 -26.73 -0.15 -2.31 16 11 C -0.11 -2.53 5.24 -26.73 -0.14 -2.67 16 12 C 0.05 1.24 1.63 -91.77 -0.15 1.09 16 13 H 0.03 0.67 6.28 -51.93 -0.33 0.34 16 14 C -0.47 -12.12 6.23 -34.44 -0.21 -12.34 16 15 H 0.06 1.69 6.63 -52.49 -0.35 1.34 16 16 C 0.05 1.45 5.31 -17.82 -0.09 1.36 16 17 N -0.90 -25.11 11.33 55.43 0.63 -24.48 16 18 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 C 0.06 1.16 5.23 -3.77 -0.02 1.14 16 23 C 0.06 0.96 5.62 -3.77 -0.02 0.94 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.20 6.14 -51.93 -0.32 0.88 16 30 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.08 1.65 6.62 -51.93 -0.34 1.30 16 32 H 0.04 0.61 6.34 -51.93 -0.33 0.28 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.64 7.22 -51.93 -0.37 1.26 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 2.13 6.06 -51.93 -0.31 1.81 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -27.11 312.65 -10.19 -37.29 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.72 Total: -1.06 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.65 Total: -12.47 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -1.51 Total: -44.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.11 -10.19 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.700 kcal (2) G-P(sol) polarization free energy of solvation -27.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds