Wall clock time and date at job start Mon Mar 30 2020 04:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46954 * 111.00072 * 2 1 4 4 C 1.53047 * 109.36790 * 183.18574 * 3 2 1 5 5 N 1.46957 * 109.36543 * 301.60413 * 4 3 2 6 6 C 1.46908 * 110.99894 * 183.18671 * 5 4 3 7 7 H 1.08994 * 109.47162 * 299.99472 * 6 5 4 8 8 C 1.52998 * 109.46799 * 59.99643 * 6 5 4 9 9 C 1.53010 * 109.46641 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47146 * 300.00133 * 9 8 6 11 11 C 1.53000 * 109.47166 * 59.99909 * 10 9 8 12 12 C 1.52996 * 109.47253 * 300.00041 * 11 10 9 13 13 H 1.08994 * 109.47269 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46842 * 300.00059 * 12 11 10 15 15 H 1.08002 * 120.00299 * 120.00437 * 14 12 11 16 16 C 1.37884 * 119.99942 * 299.71996 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46954 * 110.88250 * 59.31434 * 5 4 3 23 23 C 1.46957 * 111.00007 * 123.80282 * 2 1 3 24 24 H 1.09000 * 109.46775 * 60.00499 * 1 2 3 25 25 H 1.08999 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46937 * 299.99804 * 1 2 3 27 27 H 1.09002 * 109.49142 * 63.21873 * 3 2 1 28 28 H 1.09002 * 109.50825 * 303.16552 * 3 2 1 29 29 H 1.08995 * 109.49277 * 181.63137 * 4 3 2 30 30 H 1.09008 * 109.50530 * 61.58056 * 4 3 2 31 31 H 1.09003 * 109.47277 * 60.00214 * 8 6 5 32 32 H 1.09001 * 109.47486 * 299.99687 * 8 6 5 33 33 H 1.09000 * 109.46753 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46863 * 60.00263 * 9 8 6 35 35 H 1.09003 * 109.47345 * 299.99835 * 10 9 8 36 36 H 1.09004 * 109.47066 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47192 * 179.97438 * 11 10 9 38 38 H 1.09003 * 109.47049 * 59.99744 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.48693 * 60.65408 * 22 5 4 41 41 H 1.09006 * 109.48754 * 180.71093 * 22 5 4 42 42 H 1.09001 * 109.48548 * 296.77439 * 23 2 1 43 43 H 1.08999 * 109.49490 * 56.81908 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0802 5 7 4.0501 0.5658 1.0598 6 6 5.5192 0.5659 1.0598 7 1 5.8825 0.1122 0.1378 8 6 6.0290 2.0052 1.1554 9 6 7.5591 2.0052 1.1561 10 6 8.0686 1.2029 2.3550 11 6 7.5586 -0.2364 2.2594 12 6 6.0286 -0.2364 2.2588 13 1 5.6653 -1.2618 2.1911 14 6 5.5258 0.3911 3.5334 15 1 4.9049 1.2738 3.4924 16 6 5.8537 -0.1651 4.7517 17 7 6.6098 -1.2400 4.8016 18 14 5.2241 0.6082 6.3312 19 1 4.4000 1.7996 6.0048 20 1 4.3960 -0.3788 7.0697 21 1 6.3754 1.0183 7.1748 22 6 3.5234 -0.8061 1.0598 23 6 1.9957 -0.7633 1.1400 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6938 1.8774 0.9173 28 1 1.6014 1.9132 -0.8601 29 1 3.9178 2.3448 -0.0512 30 1 3.8257 0.8482 -1.0106 31 1 5.6657 2.4590 2.0775 32 1 5.6657 2.5769 0.3014 33 1 7.9224 3.0307 1.2237 34 1 7.9228 1.5514 0.2341 35 1 7.7049 1.6568 3.2769 36 1 9.1586 1.2025 2.3552 37 1 7.9219 -0.8081 3.1134 38 1 7.9223 -0.6902 1.3375 39 1 6.8408 -1.6311 5.6587 40 1 3.8254 -1.3115 0.1425 41 1 3.9178 -1.3470 1.9201 42 1 1.6938 -0.2821 2.0703 43 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259695604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:51 Heat of formation + Delta-G solvation = -14.321056 kcal Electronic energy + Delta-G solvation = -20430.551170 eV Core-core repulsion = 17702.315858 eV Total energy + Delta-G solvation = -2728.235312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.71765 -38.80817 -35.65578 -34.44495 -32.09181 -30.96930 -30.76894 -28.11328 -26.52701 -24.78422 -24.51912 -22.39587 -22.18685 -20.60147 -20.39177 -17.57904 -17.38925 -16.59269 -15.96723 -15.90476 -15.70275 -15.59046 -15.27866 -14.92262 -14.65898 -14.27645 -13.71706 -13.58740 -13.30373 -13.04511 -12.95076 -12.82035 -12.64352 -12.42501 -12.32776 -12.12284 -11.89151 -11.79013 -11.70358 -11.47374 -11.38705 -10.87612 -10.62789 -10.47011 -10.08551 -9.33266 -8.94548 -7.93254 -5.97103 1.40142 1.44485 1.53834 2.52272 3.02156 3.12307 3.38155 4.01317 4.06786 4.16519 4.19946 4.28851 4.39390 4.46386 4.49065 4.58563 4.65266 4.68768 4.72006 4.83241 4.87397 4.89863 4.96718 5.01045 5.03104 5.05630 5.11601 5.13017 5.18464 5.24422 5.42841 5.56610 5.71994 5.80995 5.84500 5.98343 6.04470 6.09630 6.19009 6.43186 6.52792 6.66491 7.10609 7.65659 9.12498 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.008481 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.567687 B = 3300.819980 C = 4131.684653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.554 5.554 3 C 0.063 3.937 4 C 0.053 3.947 5 N -0.531 5.531 6 C 0.106 3.894 7 H 0.009 0.991 8 C -0.095 4.095 9 C -0.104 4.104 10 C -0.099 4.099 11 C -0.108 4.108 12 C 0.053 3.947 13 H -0.009 1.009 14 C -0.459 4.459 15 H 0.054 0.946 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.287 1.287 22 C 0.067 3.933 23 C 0.067 3.933 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.252 0.748 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 5.301 -10.188 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.279 5.279 3 C -0.065 4.065 4 C -0.075 4.075 5 N -0.256 5.256 6 C -0.002 4.002 7 H 0.027 0.973 8 C -0.133 4.133 9 C -0.142 4.142 10 C -0.137 4.137 11 C -0.146 4.146 12 C 0.034 3.966 13 H 0.009 0.991 14 C -0.498 4.498 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.568 5.568 18 Si 0.763 3.237 19 H -0.196 1.196 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.061 4.061 23 C -0.061 4.061 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.895 5.200 -10.062 13.260 hybrid contribution -0.094 -0.220 1.370 1.391 sum -6.989 4.980 -8.692 12.215 Atomic orbital electron populations 1.22394 0.85919 1.02677 1.01118 1.62222 1.09031 1.14187 1.42434 1.22159 0.94210 0.89141 1.01008 1.22260 0.94767 0.99072 0.91389 1.62036 1.08087 1.13477 1.41976 1.21541 0.85797 0.97005 0.95867 0.97342 1.21450 0.95509 0.95082 1.01231 1.21428 0.95178 0.99884 0.97706 1.21298 0.97904 0.96048 0.98419 1.21430 0.98133 0.96489 0.98596 1.18701 0.92026 0.93235 0.92595 0.99055 1.21193 1.27580 1.10628 0.90384 0.92830 1.25531 0.96289 0.95765 1.01235 1.70020 1.39312 1.22697 1.24782 0.85862 0.77905 0.78535 0.81447 1.19578 1.21753 1.21379 1.21973 0.94496 0.90263 0.99401 1.22053 0.93996 0.98556 0.91490 0.89839 0.90740 0.95910 0.95202 0.88340 0.89415 0.95253 0.92511 0.91658 0.90961 0.92357 0.93599 0.93472 0.92364 0.96136 0.93861 0.95923 0.91865 0.95510 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 127.69 1.23 1.79 16 2 N -0.55 -15.36 4.97 -921.96 -4.58 -19.94 16 3 C 0.06 1.69 5.62 86.31 0.49 2.18 16 4 C 0.05 1.63 5.32 86.31 0.46 2.09 16 5 N -0.53 -20.35 4.10 -870.48 -3.57 -23.91 16 6 C 0.11 4.29 1.61 44.91 0.07 4.36 16 7 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 8 C -0.10 -3.43 4.75 30.60 0.15 -3.28 16 9 C -0.10 -3.52 5.92 30.60 0.18 -3.34 16 10 C -0.10 -4.06 5.70 30.59 0.17 -3.89 16 11 C -0.11 -5.09 5.24 30.59 0.16 -4.93 16 12 C 0.05 2.58 1.63 -11.54 -0.02 2.57 16 13 H -0.01 -0.47 6.28 -2.39 -0.02 -0.49 16 14 C -0.46 -24.27 6.23 25.60 0.16 -24.11 16 15 H 0.05 2.91 6.63 -2.91 -0.02 2.89 16 16 C 0.01 0.43 5.31 84.66 0.45 0.88 16 17 N -0.93 -53.62 11.33 21.45 0.24 -53.38 16 18 Si 0.93 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 C 0.07 2.57 5.23 86.31 0.45 3.02 16 23 C 0.07 2.17 5.62 86.31 0.49 2.66 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 26 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 2.47 6.14 -2.39 -0.01 2.46 16 30 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 2.31 6.62 -2.39 -0.02 2.29 16 32 H 0.06 1.99 6.34 -2.39 -0.02 1.97 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 2.10 7.22 -2.39 -0.02 2.08 16 36 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.06 3.15 6.08 -2.39 -0.01 3.14 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 2.86 6.06 -2.38 -0.01 2.84 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 2.46 8.13 -2.39 -0.02 2.44 16 Total: -1.00 -59.47 312.65 -0.49 -59.96 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.95 Total: 10.62 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.43 Total: -20.00 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -7.90 Total: -97.23 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -59.47 -0.49 -59.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259695604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.644 kcal (2) G-P(sol) polarization free energy of solvation -59.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds