Wall clock time and date at job start Mon Mar 30 2020 04:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46852 * 110.99871 * 2 1 4 4 C 1.53036 * 109.52394 * 174.15984 * 3 2 1 5 5 C 1.53116 * 109.27587 * 59.18194 * 4 3 2 6 6 H 1.09002 * 109.52638 * 62.25032 * 5 4 3 7 7 N 1.46896 * 109.57569 * 182.40851 * 5 4 3 8 8 C 1.46848 * 111.00032 * 58.92076 * 7 5 4 9 9 C 1.53041 * 109.52256 * 174.16038 * 8 7 5 10 10 C 1.53122 * 109.27552 * 59.18482 * 9 8 7 11 11 C 1.53112 * 109.15916 * 302.34186 * 10 9 8 12 12 C 1.46845 * 110.99968 * 294.71696 * 7 5 4 13 13 C 1.53117 * 109.16028 * 302.34474 * 5 4 3 14 14 H 1.09000 * 109.50519 * 297.67620 * 13 5 4 15 15 C 1.50704 * 109.50273 * 177.59506 * 13 5 4 16 16 H 1.07999 * 120.00171 * 354.44780 * 15 13 5 17 17 C 1.37882 * 120.00040 * 174.44194 * 15 13 5 18 18 N 1.31511 * 120.00155 * 161.89291 * 17 15 13 19 19 Si 1.86804 * 119.99872 * 342.16764 * 17 15 13 20 20 H 1.48500 * 109.46933 * 179.72382 * 19 17 15 21 21 H 1.48494 * 109.47233 * 299.72262 * 19 17 15 22 22 H 1.48507 * 109.47153 * 59.72455 * 19 17 15 23 23 C 1.46840 * 110.99953 * 235.79622 * 2 1 3 24 24 H 1.08996 * 109.47524 * 63.95580 * 1 2 3 25 25 H 1.09002 * 109.47105 * 183.95186 * 1 2 3 26 26 H 1.09005 * 109.47438 * 303.95102 * 1 2 3 27 27 H 1.09008 * 109.45893 * 54.14260 * 3 2 1 28 28 H 1.09000 * 109.46169 * 294.18141 * 3 2 1 29 29 H 1.08994 * 109.50463 * 299.23974 * 4 3 2 30 30 H 1.08999 * 109.50085 * 179.11890 * 4 3 2 31 31 H 1.08999 * 109.46275 * 294.18161 * 8 7 5 32 32 H 1.09001 * 109.45910 * 54.14880 * 8 7 5 33 33 H 1.08999 * 109.50572 * 299.23649 * 9 8 7 34 34 H 1.09003 * 109.53338 * 179.14392 * 9 8 7 35 35 H 1.08999 * 109.51565 * 182.43603 * 10 9 8 36 36 H 1.08995 * 109.52272 * 62.25084 * 10 9 8 37 37 H 1.09004 * 109.50581 * 297.71427 * 11 10 9 38 38 H 1.09001 * 109.53775 * 177.61881 * 11 10 9 39 39 H 1.09006 * 109.45922 * 305.85378 * 12 7 5 40 40 H 1.08993 * 109.46832 * 65.82171 * 12 7 5 41 41 H 0.97003 * 119.99805 * 354.92828 * 18 17 15 42 42 H 1.08991 * 109.46723 * 65.81809 * 23 2 1 43 43 H 1.09009 * 109.45938 * 305.84885 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1187 0.5372 -1.0144 6 1 3.8886 1.0356 -1.9560 7 7 5.5757 0.4487 -0.8490 8 6 5.9227 -0.1994 0.4222 9 6 7.4375 -0.4053 0.4945 10 6 8.1379 0.9519 0.3842 11 6 7.7219 1.6271 -0.9256 12 6 6.1989 1.7740 -0.9568 13 6 3.5181 -0.8713 -1.0209 14 1 3.7819 -1.3837 -0.0957 15 6 4.0597 -1.6438 -2.1960 16 1 4.6911 -1.1518 -2.9211 17 6 3.7494 -2.9789 -2.3455 18 7 3.9054 -3.5636 -3.5131 19 14 3.1000 -3.9554 -0.8914 20 1 2.8388 -5.3553 -1.3122 21 1 4.1068 -3.9464 0.2001 22 1 1.8383 -3.3406 -0.4061 23 6 1.9952 -0.7706 -1.1338 24 1 -0.3634 0.4512 -0.9232 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3634 0.5739 0.8525 27 1 1.5633 1.9258 0.8330 28 1 1.7323 1.8609 -0.9375 29 1 3.7813 0.8569 1.0906 30 1 3.9098 2.3514 0.1310 31 1 5.6019 0.4317 1.2510 32 1 5.4215 -1.1652 0.4861 33 1 7.7570 -1.0476 -0.3261 34 1 7.6968 -0.8725 1.4445 35 1 9.2181 0.8058 0.3917 36 1 7.8485 1.5806 1.2261 37 1 8.0460 1.0168 -1.7686 38 1 8.1840 2.6122 -0.9906 39 1 5.8982 2.2415 -1.8944 40 1 5.8769 2.3958 -0.1215 41 1 4.1681 -3.0401 -4.2864 42 1 1.7324 -0.2707 -2.0660 43 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259731104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:50 Heat of formation + Delta-G solvation = 0.397136 kcal Electronic energy + Delta-G solvation = -20510.768010 eV Core-core repulsion = 17783.170927 eV Total energy + Delta-G solvation = -2727.597083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47006 -37.37218 -34.06155 -32.80382 -30.55589 -30.22213 -29.98104 -25.82769 -24.60162 -23.49394 -22.76762 -21.60829 -20.78613 -19.39863 -18.16641 -17.34941 -15.95418 -14.79939 -14.65727 -14.45392 -14.09685 -13.89940 -13.70798 -13.47616 -13.39107 -12.89269 -12.83295 -12.30493 -11.96244 -11.71930 -11.58938 -11.55142 -11.08583 -11.02249 -10.70213 -10.52134 -10.45425 -10.26153 -10.11719 -10.01574 -9.85174 -9.55938 -9.21486 -8.67172 -8.11717 -7.75511 -7.41989 -6.28160 -3.87428 3.47889 3.52920 3.70099 4.47637 4.57452 4.61715 5.13456 5.19806 5.24523 5.35657 5.42171 5.49599 5.56422 5.64887 5.73363 5.76719 5.83914 5.89327 5.91125 5.97385 6.04874 6.15317 6.16369 6.17273 6.20560 6.25566 6.37341 6.41882 6.47155 6.55845 6.57463 6.65458 6.73894 6.86168 7.12851 7.39640 7.65390 7.67817 7.89061 7.95585 8.34148 8.57867 9.12749 9.77203 11.08814 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.010093 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.904160 B = 2773.411142 C = 3800.253640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.067 3.933 4 C -0.153 4.153 5 C 0.106 3.894 6 H 0.066 0.934 7 N -0.508 5.508 8 C 0.057 3.943 9 C -0.117 4.117 10 C -0.117 4.117 11 C -0.115 4.115 12 C 0.054 3.946 13 C 0.035 3.965 14 H 0.031 0.969 15 C -0.568 4.568 16 H 0.063 0.937 17 C 0.029 3.971 18 N -0.912 5.912 19 Si 1.034 2.966 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.050 3.950 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.024 0.976 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 10.295 8.476 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.062 4.062 4 C -0.192 4.192 5 C -0.002 4.002 6 H 0.084 0.916 7 N -0.230 5.230 8 C -0.071 4.071 9 C -0.155 4.155 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.074 4.074 13 C 0.015 3.985 14 H 0.048 0.952 15 C -0.606 4.606 16 H 0.082 0.918 17 C -0.175 4.175 18 N -0.547 5.547 19 Si 0.864 3.136 20 H -0.217 1.217 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.078 4.078 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.052 8.242 8.980 12.234 hybrid contribution -0.214 2.525 -0.589 2.601 sum 0.839 10.767 8.391 13.676 Atomic orbital electron populations 1.22296 0.88837 1.01682 0.99356 1.62101 1.06399 1.12943 1.45994 1.21885 0.95371 0.89841 0.99100 1.22364 0.95212 0.99878 1.01774 1.21700 0.85392 0.97836 0.95304 0.91583 1.61958 1.09476 1.18159 1.33406 1.22079 0.95321 1.00040 0.89633 1.21590 0.95474 0.96862 1.01573 1.21550 0.99424 0.97098 0.97428 1.21559 0.95541 0.99800 0.98382 1.22052 0.94448 0.91109 0.99831 1.19094 0.89158 0.91782 0.98478 0.95151 1.21860 1.32847 0.96430 1.09508 0.91838 1.25642 0.95182 0.95787 1.00882 1.70827 1.44143 1.40015 0.99736 0.84213 0.77222 0.76188 0.75988 1.21666 1.21131 1.20077 1.22933 0.98925 0.97147 0.88763 0.96345 0.91726 0.92394 0.92105 0.95705 0.91311 0.92857 0.95983 0.89600 0.90901 0.92351 0.92539 0.92912 0.91156 0.92529 0.91669 0.95861 0.92376 0.95751 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.59 60.06 0.58 1.00 16 2 N -0.55 -10.33 4.91 -242.96 -1.19 -11.53 16 3 C 0.07 1.11 5.46 -3.83 -0.02 1.09 16 4 C -0.15 -2.61 4.69 -26.65 -0.12 -2.74 16 5 C 0.11 2.14 1.66 -67.59 -0.11 2.02 16 6 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 7 N -0.51 -9.74 4.29 -226.55 -0.97 -10.71 16 8 C 0.06 1.03 4.64 -3.83 -0.02 1.01 16 9 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 10 C -0.12 -1.57 6.00 -26.61 -0.16 -1.73 16 11 C -0.11 -1.62 6.09 -26.65 -0.16 -1.78 16 12 C 0.05 0.86 5.03 -3.83 -0.02 0.84 16 13 C 0.03 0.80 1.08 -91.69 -0.10 0.70 16 14 H 0.03 0.74 4.84 -51.93 -0.25 0.49 16 15 C -0.57 -15.57 8.49 -34.44 -0.29 -15.86 16 16 H 0.06 1.92 7.99 -52.49 -0.42 1.50 16 17 C 0.03 0.83 5.34 -17.82 -0.10 0.74 16 18 N -0.91 -28.03 13.70 55.43 0.76 -27.27 16 19 Si 1.03 25.46 26.39 -169.99 -4.49 20.98 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.31 5.60 56.52 0.32 -5.99 16 23 C 0.05 1.09 4.43 -3.84 -0.02 1.08 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.06 0.88 8.09 -51.92 -0.42 0.46 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.21 6.40 -51.93 -0.33 0.88 16 30 H 0.05 0.82 6.80 -51.93 -0.35 0.47 16 31 H 0.02 0.37 6.57 -51.93 -0.34 0.03 16 32 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.02 0.35 6.80 -51.93 -0.35 0.00 16 41 H 0.27 8.19 8.73 -40.82 -0.36 7.84 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.76 4.82 -51.92 -0.25 1.51 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -29.22 310.41 -9.68 -38.90 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.76 Total: 0.58 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.71 Total: -15.62 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -1.41 Total: -49.51 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.49 Total: 20.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.22 -9.68 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.300 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds