Wall clock time and date at job start Mon Mar 30 2020 04:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46852 * 110.99871 * 2 1 4 4 C 1.53036 * 109.52394 * 174.15984 * 3 2 1 5 5 C 1.53116 * 109.27587 * 59.18194 * 4 3 2 6 6 H 1.09002 * 109.52638 * 62.25032 * 5 4 3 7 7 N 1.46896 * 109.57569 * 182.40851 * 5 4 3 8 8 C 1.46848 * 111.00032 * 58.92076 * 7 5 4 9 9 C 1.53041 * 109.52256 * 174.16038 * 8 7 5 10 10 C 1.53122 * 109.27552 * 59.18482 * 9 8 7 11 11 C 1.53112 * 109.15916 * 302.34186 * 10 9 8 12 12 C 1.46845 * 110.99968 * 294.71696 * 7 5 4 13 13 C 1.53117 * 109.16028 * 302.34474 * 5 4 3 14 14 H 1.09000 * 109.50519 * 297.67620 * 13 5 4 15 15 C 1.50704 * 109.50273 * 177.59506 * 13 5 4 16 16 H 1.07999 * 120.00171 * 354.44780 * 15 13 5 17 17 C 1.37882 * 120.00040 * 174.44194 * 15 13 5 18 18 N 1.31511 * 120.00155 * 161.89291 * 17 15 13 19 19 Si 1.86804 * 119.99872 * 342.16764 * 17 15 13 20 20 H 1.48500 * 109.46933 * 179.72382 * 19 17 15 21 21 H 1.48494 * 109.47233 * 299.72262 * 19 17 15 22 22 H 1.48507 * 109.47153 * 59.72455 * 19 17 15 23 23 C 1.46840 * 110.99953 * 235.79622 * 2 1 3 24 24 H 1.08996 * 109.47524 * 63.95580 * 1 2 3 25 25 H 1.09002 * 109.47105 * 183.95186 * 1 2 3 26 26 H 1.09005 * 109.47438 * 303.95102 * 1 2 3 27 27 H 1.09008 * 109.45893 * 54.14260 * 3 2 1 28 28 H 1.09000 * 109.46169 * 294.18141 * 3 2 1 29 29 H 1.08994 * 109.50463 * 299.23974 * 4 3 2 30 30 H 1.08999 * 109.50085 * 179.11890 * 4 3 2 31 31 H 1.08999 * 109.46275 * 294.18161 * 8 7 5 32 32 H 1.09001 * 109.45910 * 54.14880 * 8 7 5 33 33 H 1.08999 * 109.50572 * 299.23649 * 9 8 7 34 34 H 1.09003 * 109.53338 * 179.14392 * 9 8 7 35 35 H 1.08999 * 109.51565 * 182.43603 * 10 9 8 36 36 H 1.08995 * 109.52272 * 62.25084 * 10 9 8 37 37 H 1.09004 * 109.50581 * 297.71427 * 11 10 9 38 38 H 1.09001 * 109.53775 * 177.61881 * 11 10 9 39 39 H 1.09006 * 109.45922 * 305.85378 * 12 7 5 40 40 H 1.08993 * 109.46832 * 65.82171 * 12 7 5 41 41 H 0.97003 * 119.99805 * 354.92828 * 18 17 15 42 42 H 1.08991 * 109.46723 * 65.81809 * 23 2 1 43 43 H 1.09009 * 109.45938 * 305.84885 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1187 0.5372 -1.0144 6 1 3.8886 1.0356 -1.9560 7 7 5.5757 0.4487 -0.8490 8 6 5.9227 -0.1994 0.4222 9 6 7.4375 -0.4053 0.4945 10 6 8.1379 0.9519 0.3842 11 6 7.7219 1.6271 -0.9256 12 6 6.1989 1.7740 -0.9568 13 6 3.5181 -0.8713 -1.0209 14 1 3.7819 -1.3837 -0.0957 15 6 4.0597 -1.6438 -2.1960 16 1 4.6911 -1.1518 -2.9211 17 6 3.7494 -2.9789 -2.3455 18 7 3.9054 -3.5636 -3.5131 19 14 3.1000 -3.9554 -0.8914 20 1 2.8388 -5.3553 -1.3122 21 1 4.1068 -3.9464 0.2001 22 1 1.8383 -3.3406 -0.4061 23 6 1.9952 -0.7706 -1.1338 24 1 -0.3634 0.4512 -0.9232 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3634 0.5739 0.8525 27 1 1.5633 1.9258 0.8330 28 1 1.7323 1.8609 -0.9375 29 1 3.7813 0.8569 1.0906 30 1 3.9098 2.3514 0.1310 31 1 5.6019 0.4317 1.2510 32 1 5.4215 -1.1652 0.4861 33 1 7.7570 -1.0476 -0.3261 34 1 7.6968 -0.8725 1.4445 35 1 9.2181 0.8058 0.3917 36 1 7.8485 1.5806 1.2261 37 1 8.0460 1.0168 -1.7686 38 1 8.1840 2.6122 -0.9906 39 1 5.8982 2.2415 -1.8944 40 1 5.8769 2.3958 -0.1215 41 1 4.1681 -3.0401 -4.2864 42 1 1.7324 -0.2707 -2.0660 43 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259731104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:50 Heat of formation + Delta-G solvation = -20.023857 kcal Electronic energy + Delta-G solvation = -20511.653531 eV Core-core repulsion = 17783.170927 eV Total energy + Delta-G solvation = -2728.482604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95617 -38.76377 -35.61047 -34.71149 -32.13637 -31.59140 -31.50995 -27.23718 -26.44833 -24.87270 -24.11772 -23.17960 -22.34129 -20.79361 -19.70538 -19.52106 -17.40468 -16.27418 -16.09421 -15.84480 -15.65544 -15.38477 -15.31536 -15.11080 -14.70958 -14.39198 -14.14686 -13.67307 -13.58678 -13.36517 -13.18318 -12.87288 -12.59928 -12.42308 -12.28763 -12.11726 -12.03515 -11.72952 -11.58562 -11.49609 -11.28645 -11.16993 -11.00165 -10.63855 -10.33952 -9.24156 -8.85979 -8.57228 -6.18033 1.47355 1.52810 1.72587 2.54087 2.99798 3.16327 3.24729 3.89556 3.94538 4.00773 4.09528 4.14059 4.17584 4.36341 4.42949 4.46324 4.53375 4.58917 4.61625 4.66784 4.71221 4.78595 4.80770 4.91577 4.93326 4.96601 4.98364 5.04486 5.05628 5.14703 5.19528 5.25622 5.35437 5.41032 5.54340 5.63854 5.96124 6.18455 6.23255 6.34392 6.47993 6.53352 6.77015 7.54666 8.76466 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.010093 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.904160 B = 2773.411142 C = 3800.253640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.065 3.935 4 C -0.141 4.141 5 C 0.110 3.890 6 H 0.042 0.958 7 N -0.538 5.538 8 C 0.060 3.940 9 C -0.117 4.117 10 C -0.110 4.110 11 C -0.113 4.113 12 C 0.054 3.946 13 C 0.036 3.964 14 H 0.027 0.973 15 C -0.557 4.557 16 H 0.020 0.980 17 C -0.022 4.022 18 N -0.948 5.948 19 Si 1.074 2.926 20 H -0.296 1.296 21 H -0.271 1.271 22 H -0.247 1.247 23 C 0.061 3.939 24 H 0.021 0.979 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.006 0.994 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 12.374 11.628 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.063 4.063 4 C -0.180 4.180 5 C 0.001 3.999 6 H 0.060 0.940 7 N -0.261 5.261 8 C -0.068 4.068 9 C -0.154 4.154 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.073 4.073 13 C 0.016 3.984 14 H 0.045 0.955 15 C -0.596 4.596 16 H 0.038 0.962 17 C -0.218 4.218 18 N -0.585 5.585 19 Si 0.898 3.102 20 H -0.222 1.222 21 H -0.196 1.196 22 H -0.172 1.172 23 C -0.068 4.068 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.702 10.361 12.144 15.978 hybrid contribution -0.066 1.955 -1.633 2.549 sum 0.636 12.316 10.510 16.204 Atomic orbital electron populations 1.22398 0.86630 1.02357 1.00901 1.62044 1.08458 1.14030 1.43636 1.22012 0.95025 0.88845 1.00447 1.22240 0.95544 1.00452 0.99797 1.21474 0.86555 0.96004 0.95871 0.93966 1.61868 1.09046 1.20606 1.34626 1.22019 0.96611 0.98488 0.89639 1.21592 0.94071 0.98261 1.01521 1.21519 1.00264 0.95537 0.97439 1.21570 0.94236 1.01140 0.98136 1.22111 0.95516 0.89539 1.00163 1.18982 0.90265 0.93277 0.95839 0.95549 1.21947 1.31256 0.96659 1.09726 0.96206 1.26916 0.95359 0.97384 1.02191 1.70952 1.47269 1.40067 1.00250 0.83705 0.78308 0.74697 0.73531 1.22218 1.19607 1.17165 1.22538 0.97792 0.96888 0.89531 0.96075 0.91887 0.89196 0.88648 0.95869 0.91267 0.90417 0.94148 0.93043 0.93709 0.90335 0.90658 0.91051 0.93405 0.89563 0.92423 0.93949 0.94163 0.97612 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.59 127.69 1.22 1.93 16 2 N -0.56 -19.57 4.91 -922.58 -4.53 -24.10 16 3 C 0.07 1.95 5.46 86.32 0.47 2.42 16 4 C -0.14 -4.43 4.69 30.65 0.14 -4.29 16 5 C 0.11 4.40 1.66 44.99 0.07 4.48 16 6 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 7 N -0.54 -20.61 4.29 -870.66 -3.74 -24.35 16 8 C 0.06 2.11 4.64 86.33 0.40 2.51 16 9 C -0.12 -3.49 6.09 30.65 0.19 -3.31 16 10 C -0.11 -2.62 6.00 30.67 0.18 -2.44 16 11 C -0.11 -2.95 6.09 30.65 0.19 -2.77 16 12 C 0.05 1.65 5.03 86.33 0.43 2.08 16 13 C 0.04 1.69 1.08 -11.49 -0.01 1.68 16 14 H 0.03 1.29 4.84 -2.39 -0.01 1.27 16 15 C -0.56 -32.02 8.49 25.60 0.22 -31.80 16 16 H 0.02 1.28 7.99 -2.91 -0.02 1.25 16 17 C -0.02 -1.28 5.34 84.66 0.45 -0.83 16 18 N -0.95 -61.10 13.70 21.45 0.29 -60.81 16 19 Si 1.07 52.20 26.39 68.60 1.81 54.01 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.25 -10.85 5.60 99.48 0.56 -10.29 16 23 C 0.06 2.67 4.43 86.33 0.38 3.05 16 24 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 1.99 8.10 -2.38 -0.02 1.97 16 27 H 0.10 2.28 8.09 -2.38 -0.02 2.26 16 28 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 2.20 6.40 -2.39 -0.02 2.19 16 30 H 0.08 2.09 6.80 -2.39 -0.02 2.07 16 31 H 0.04 1.26 6.57 -2.39 -0.02 1.24 16 32 H 0.05 2.13 5.99 -2.39 -0.01 2.12 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.80 8.08 -2.38 -0.02 1.78 16 40 H 0.04 1.13 6.80 -2.39 -0.02 1.11 16 41 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.06 2.74 4.82 -2.38 -0.01 2.73 16 Total: -1.00 -66.96 310.41 -1.05 -68.01 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.77 Total: 14.52 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 4.35 Total: -27.28 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -7.98 Total: -109.26 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.81 Total: 54.01 kcal Total: -66.96 -1.05 -68.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.988 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds