Wall clock time and date at job start Mon Mar 30 2020 04:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46847 * 110.99906 * 2 1 4 4 C 1.53035 * 109.52236 * 185.84239 * 3 2 1 5 5 C 1.53123 * 109.28069 * 300.82068 * 4 3 2 6 6 H 1.08999 * 109.52056 * 297.69136 * 5 4 3 7 7 N 1.46897 * 109.52682 * 177.55956 * 5 4 3 8 8 C 1.46854 * 110.99665 * 70.12794 * 7 5 4 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 5 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 C 1.46844 * 111.00090 * 194.33470 * 7 5 4 13 13 C 1.53118 * 109.21182 * 57.62240 * 5 4 3 14 14 H 1.09000 * 109.50627 * 182.44025 * 13 5 4 15 15 C 1.50701 * 109.50537 * 62.32109 * 13 5 4 16 16 H 1.07999 * 119.99626 * 359.97438 * 15 13 5 17 17 C 1.37868 * 119.99999 * 180.02562 * 15 13 5 18 18 N 1.31510 * 120.00564 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 119.99771 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47095 * 119.99961 * 19 17 15 22 22 H 1.48499 * 109.47253 * 239.99738 * 19 17 15 23 23 C 1.46841 * 111.00051 * 124.21295 * 2 1 3 24 24 H 1.09001 * 109.47246 * 56.04630 * 1 2 3 25 25 H 1.08998 * 109.46811 * 176.04374 * 1 2 3 26 26 H 1.09000 * 109.47143 * 296.04528 * 1 2 3 27 27 H 1.08994 * 109.46232 * 65.82730 * 3 2 1 28 28 H 1.09002 * 109.45567 * 305.84801 * 3 2 1 29 29 H 1.09003 * 109.50522 * 180.87754 * 4 3 2 30 30 H 1.08996 * 109.50622 * 60.76324 * 4 3 2 31 31 H 1.08994 * 109.46310 * 65.82535 * 8 7 5 32 32 H 1.09004 * 109.45830 * 305.85222 * 8 7 5 33 33 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 34 34 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 35 35 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 36 36 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 37 37 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 38 38 H 1.08993 * 109.49981 * 182.40384 * 11 10 9 39 39 H 1.09002 * 109.46133 * 294.17882 * 12 7 5 40 40 H 1.09002 * 109.46165 * 54.15521 * 12 7 5 41 41 H 0.97001 * 120.00683 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.46336 * 294.17618 * 23 2 1 43 43 H 1.08995 * 109.46564 * 54.15190 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1189 0.5370 1.0143 6 1 3.8897 1.0360 1.9558 7 7 5.5757 0.4486 0.8473 8 6 6.2108 1.7542 1.0678 9 6 7.7035 1.6578 0.7445 10 6 8.3478 0.5978 1.6421 11 6 7.6364 -0.7413 1.4287 12 6 6.1457 -0.5754 1.7322 13 6 3.5184 -0.8715 1.0223 14 1 3.9103 -1.4294 1.8728 15 6 3.8823 -1.5810 -0.2565 16 1 4.4815 -1.0782 -1.0012 17 6 3.4494 -2.8714 -0.4761 18 7 2.7186 -3.4831 0.4301 19 14 3.8999 -3.7505 -2.0616 20 1 4.7212 -2.8505 -2.9105 21 1 4.6753 -4.9767 -1.7447 22 1 2.6608 -4.1231 -2.7904 23 6 1.9953 -0.7708 1.1336 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.7325 1.8608 0.9375 28 1 1.5634 1.9256 -0.8331 29 1 3.9099 2.3513 -0.1311 30 1 3.7813 0.8568 -1.0907 31 1 6.0830 2.0489 2.1094 32 1 5.7462 2.4980 0.4204 33 1 8.1776 2.6229 0.9232 34 1 7.8327 1.3769 -0.3008 35 1 9.4022 0.4951 1.3855 36 1 8.2535 0.8981 2.6857 37 1 7.7639 -1.0602 0.3943 38 1 8.0626 -1.4901 2.0963 39 1 6.0182 -0.2697 2.7707 40 1 5.6339 -1.5235 1.5673 41 1 2.4143 -4.3912 0.2757 42 1 1.7325 -0.2709 2.0660 43 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259731109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:53 Heat of formation + Delta-G solvation = 5.657582 kcal Electronic energy + Delta-G solvation = -20577.132516 eV Core-core repulsion = 17849.763543 eV Total energy + Delta-G solvation = -2727.368973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.12608 -37.19509 -33.80994 -32.56667 -30.52357 -30.17635 -29.13028 -25.56859 -24.86607 -23.18873 -22.85899 -21.07085 -20.85634 -19.16840 -18.54336 -15.90980 -15.61244 -14.69050 -14.34002 -14.23043 -14.14507 -13.77405 -13.71129 -13.15313 -13.00785 -12.83346 -12.35415 -12.10873 -11.84137 -11.76861 -11.37291 -11.08923 -10.79461 -10.76136 -10.59076 -10.46844 -10.41815 -10.20000 -10.04754 -9.82726 -9.69809 -9.43854 -8.87884 -8.74392 -8.12410 -7.39725 -7.17263 -5.77786 -3.74189 3.45097 3.53083 3.58948 4.59886 4.66579 4.96422 5.21983 5.27862 5.32423 5.56607 5.66831 5.75003 5.86885 5.88387 5.97583 5.99080 6.02820 6.06156 6.10924 6.15204 6.22618 6.31218 6.32601 6.42759 6.47071 6.50293 6.50873 6.56014 6.63400 6.82081 6.91936 6.95360 7.05986 7.22395 7.57994 7.68962 7.99466 8.04514 8.18423 8.27151 8.29458 8.69393 9.25706 9.86468 11.30963 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.009881 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.044976 B = 2833.051508 C = 3873.672268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.514 5.514 3 C 0.064 3.936 4 C -0.095 4.095 5 C 0.096 3.904 6 H 0.006 0.994 7 N -0.512 5.512 8 C 0.052 3.948 9 C -0.113 4.113 10 C -0.119 4.119 11 C -0.115 4.115 12 C 0.056 3.944 13 C 0.051 3.949 14 H 0.031 0.969 15 C -0.448 4.448 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.907 5.907 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.066 3.934 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.006 0.994 27 H 0.010 0.990 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.012 0.988 40 H 0.107 0.893 41 H 0.254 0.746 42 H -0.019 1.019 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.096 8.686 2.122 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.238 5.238 3 C -0.065 4.065 4 C -0.133 4.133 5 C -0.012 4.012 6 H 0.024 0.976 7 N -0.236 5.236 8 C -0.076 4.076 9 C -0.151 4.151 10 C -0.157 4.157 11 C -0.153 4.153 12 C -0.072 4.072 13 C 0.032 3.968 14 H 0.049 0.951 15 C -0.487 4.487 16 H 0.083 0.917 17 C -0.141 4.141 18 N -0.549 5.549 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.219 1.219 22 H -0.217 1.217 23 C -0.062 4.062 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.025 0.975 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.125 0.875 41 H 0.063 0.937 42 H -0.001 1.001 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.281 8.150 1.230 9.288 hybrid contribution -0.371 0.182 0.801 0.901 sum 3.911 8.332 2.031 9.425 Atomic orbital electron populations 1.22262 0.89682 1.01440 0.98310 1.61809 1.04919 1.11395 1.45714 1.21958 0.96045 0.90457 0.98038 1.21492 0.93241 0.97409 1.01196 1.21743 0.86047 0.99257 0.94156 0.97606 1.61780 1.04068 1.04142 1.53630 1.22095 0.94612 0.92888 0.98032 1.21547 0.95099 0.97870 1.00607 1.21577 0.98739 0.96283 0.99064 1.21574 0.95453 0.95966 1.02273 1.22163 0.94406 0.98372 0.92257 1.18978 0.90059 0.89220 0.98563 0.95081 1.20907 1.29148 0.96783 1.01841 0.91720 1.24836 0.95608 0.97680 0.96014 1.69820 1.37955 1.12723 1.34369 0.86605 0.77753 0.79322 0.84618 1.19963 1.21879 1.21687 1.22318 0.99344 0.98536 0.85987 0.92896 0.91777 0.97538 0.97186 0.92323 0.94153 0.89450 0.96448 0.91396 0.92703 0.91235 0.92711 0.93014 0.91060 0.92458 0.97031 0.87508 0.93656 1.00112 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.59 60.07 0.58 1.16 16 2 N -0.51 -11.10 4.52 -242.95 -1.10 -12.19 16 3 C 0.06 1.21 5.46 -3.83 -0.02 1.19 16 4 C -0.10 -1.85 5.08 -26.65 -0.14 -1.98 16 5 C 0.10 1.98 1.72 -67.59 -0.12 1.86 16 6 H 0.01 0.13 8.08 -51.93 -0.42 -0.29 16 7 N -0.51 -9.85 3.98 -226.54 -0.90 -10.76 16 8 C 0.05 0.84 5.31 -3.83 -0.02 0.82 16 9 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 10 C -0.12 -1.63 6.00 -26.60 -0.16 -1.79 16 11 C -0.11 -1.84 6.09 -26.65 -0.16 -2.00 16 12 C 0.06 1.05 4.74 -3.84 -0.02 1.04 16 13 C 0.05 1.21 1.57 -91.68 -0.14 1.06 16 14 H 0.03 0.81 6.38 -51.93 -0.33 0.48 16 15 C -0.45 -11.67 6.25 -34.44 -0.22 -11.88 16 16 H 0.06 1.76 6.72 -52.49 -0.35 1.41 16 17 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 18 N -0.91 -25.37 11.33 55.43 0.63 -24.74 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 C 0.07 1.56 4.69 -3.83 -0.02 1.54 16 24 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.04 0.69 6.69 -51.93 -0.35 0.34 16 30 H 0.09 1.90 6.83 -51.93 -0.35 1.55 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 1.06 6.46 -51.93 -0.34 0.72 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.11 2.37 5.31 -51.93 -0.28 2.10 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 42 H -0.02 -0.44 8.14 -51.93 -0.42 -0.86 16 43 H 0.11 2.86 6.04 -51.93 -0.31 2.55 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -27.28 313.32 -10.14 -37.42 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.78 Total: -1.97 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.69 Total: -9.29 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -1.37 Total: -47.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.28 -10.14 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -27.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds