Wall clock time and date at job start Mon Mar 30 2020 04:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46847 * 110.99906 * 2 1 4 4 C 1.53035 * 109.52236 * 185.84239 * 3 2 1 5 5 C 1.53123 * 109.28069 * 300.82068 * 4 3 2 6 6 H 1.08999 * 109.52056 * 297.69136 * 5 4 3 7 7 N 1.46897 * 109.52682 * 177.55956 * 5 4 3 8 8 C 1.46854 * 110.99665 * 70.12794 * 7 5 4 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 5 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 C 1.46844 * 111.00090 * 194.33470 * 7 5 4 13 13 C 1.53118 * 109.21182 * 57.62240 * 5 4 3 14 14 H 1.09000 * 109.50627 * 182.44025 * 13 5 4 15 15 C 1.50701 * 109.50537 * 62.32109 * 13 5 4 16 16 H 1.07999 * 119.99626 * 359.97438 * 15 13 5 17 17 C 1.37868 * 119.99999 * 180.02562 * 15 13 5 18 18 N 1.31510 * 120.00564 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 119.99771 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47157 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47095 * 119.99961 * 19 17 15 22 22 H 1.48499 * 109.47253 * 239.99738 * 19 17 15 23 23 C 1.46841 * 111.00051 * 124.21295 * 2 1 3 24 24 H 1.09001 * 109.47246 * 56.04630 * 1 2 3 25 25 H 1.08998 * 109.46811 * 176.04374 * 1 2 3 26 26 H 1.09000 * 109.47143 * 296.04528 * 1 2 3 27 27 H 1.08994 * 109.46232 * 65.82730 * 3 2 1 28 28 H 1.09002 * 109.45567 * 305.84801 * 3 2 1 29 29 H 1.09003 * 109.50522 * 180.87754 * 4 3 2 30 30 H 1.08996 * 109.50622 * 60.76324 * 4 3 2 31 31 H 1.08994 * 109.46310 * 65.82535 * 8 7 5 32 32 H 1.09004 * 109.45830 * 305.85222 * 8 7 5 33 33 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 34 34 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 35 35 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 36 36 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 37 37 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 38 38 H 1.08993 * 109.49981 * 182.40384 * 11 10 9 39 39 H 1.09002 * 109.46133 * 294.17882 * 12 7 5 40 40 H 1.09002 * 109.46165 * 54.15521 * 12 7 5 41 41 H 0.97001 * 120.00683 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.46336 * 294.17618 * 23 2 1 43 43 H 1.08995 * 109.46564 * 54.15190 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1189 0.5370 1.0143 6 1 3.8897 1.0360 1.9558 7 7 5.5757 0.4486 0.8473 8 6 6.2108 1.7542 1.0678 9 6 7.7035 1.6578 0.7445 10 6 8.3478 0.5978 1.6421 11 6 7.6364 -0.7413 1.4287 12 6 6.1457 -0.5754 1.7322 13 6 3.5184 -0.8715 1.0223 14 1 3.9103 -1.4294 1.8728 15 6 3.8823 -1.5810 -0.2565 16 1 4.4815 -1.0782 -1.0012 17 6 3.4494 -2.8714 -0.4761 18 7 2.7186 -3.4831 0.4301 19 14 3.8999 -3.7505 -2.0616 20 1 4.7212 -2.8505 -2.9105 21 1 4.6753 -4.9767 -1.7447 22 1 2.6608 -4.1231 -2.7904 23 6 1.9953 -0.7708 1.1336 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.7325 1.8608 0.9375 28 1 1.5634 1.9256 -0.8331 29 1 3.9099 2.3513 -0.1311 30 1 3.7813 0.8568 -1.0907 31 1 6.0830 2.0489 2.1094 32 1 5.7462 2.4980 0.4204 33 1 8.1776 2.6229 0.9232 34 1 7.8327 1.3769 -0.3008 35 1 9.4022 0.4951 1.3855 36 1 8.2535 0.8981 2.6857 37 1 7.7639 -1.0602 0.3943 38 1 8.0626 -1.4901 2.0963 39 1 6.0182 -0.2697 2.7707 40 1 5.6339 -1.5235 1.5673 41 1 2.4143 -4.3912 0.2757 42 1 1.7325 -0.2709 2.0660 43 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259731109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:53 Heat of formation + Delta-G solvation = -10.888961 kcal Electronic energy + Delta-G solvation = -20577.850028 eV Core-core repulsion = 17849.763543 eV Total energy + Delta-G solvation = -2728.086485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68960 -38.68820 -35.37703 -34.44033 -31.97397 -31.65938 -30.83629 -27.17459 -26.74360 -24.60053 -24.39245 -22.63296 -22.41173 -20.48067 -20.34160 -17.67960 -17.33865 -16.51497 -15.96305 -15.74846 -15.61919 -15.40297 -15.13212 -14.60999 -14.48583 -14.34807 -13.88722 -13.61749 -13.52317 -13.23145 -12.93605 -12.78295 -12.72172 -12.42818 -12.17568 -11.97882 -11.90613 -11.78274 -11.55960 -11.46107 -11.22472 -10.93383 -10.77851 -10.57366 -10.17695 -8.91429 -8.82973 -7.87274 -5.87270 1.45411 1.49333 1.59131 2.59720 3.15906 3.36217 3.47661 4.01172 4.03992 4.11499 4.21352 4.33725 4.40740 4.45010 4.51428 4.58360 4.60807 4.68548 4.71292 4.77111 4.83976 4.89577 4.94044 4.99103 5.03421 5.07346 5.14658 5.19967 5.24681 5.27566 5.31770 5.47068 5.54663 5.60500 5.70199 5.79408 6.10899 6.38270 6.49661 6.58507 6.63885 6.74003 7.14721 7.74431 9.20190 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.009881 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.044976 B = 2833.051508 C = 3873.672268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.538 5.538 3 C 0.064 3.936 4 C -0.088 4.088 5 C 0.101 3.899 6 H 0.004 0.996 7 N -0.526 5.526 8 C 0.050 3.950 9 C -0.109 4.109 10 C -0.113 4.113 11 C -0.111 4.111 12 C 0.060 3.940 13 C 0.052 3.948 14 H 0.000 1.000 15 C -0.434 4.434 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.930 5.930 19 Si 0.937 3.063 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.076 3.924 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.064 0.936 41 H 0.250 0.750 42 H -0.018 1.018 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 10.962 1.596 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.263 5.263 3 C -0.064 4.064 4 C -0.126 4.126 5 C -0.007 4.007 6 H 0.021 0.979 7 N -0.250 5.250 8 C -0.077 4.077 9 C -0.147 4.147 10 C -0.151 4.151 11 C -0.149 4.149 12 C -0.068 4.068 13 C 0.033 3.967 14 H 0.018 0.982 15 C -0.473 4.473 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.574 5.574 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.220 1.220 23 C -0.053 4.053 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.000 1.000 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.268 10.442 0.696 11.716 hybrid contribution -0.680 -0.507 0.995 1.307 sum 4.589 9.935 1.691 11.073 Atomic orbital electron populations 1.22269 0.87834 1.01211 1.00092 1.61729 1.06867 1.13005 1.44660 1.22036 0.95630 0.89169 0.99574 1.21425 0.93791 0.98437 0.98954 1.21584 0.87250 0.97092 0.94773 0.97851 1.61795 1.03334 1.05991 1.53874 1.22213 0.95996 0.91077 0.98450 1.21550 0.93576 0.99477 1.00113 1.21551 0.99601 0.94371 0.99564 1.21542 0.93605 0.98188 1.01601 1.22017 0.96034 0.96505 0.92255 1.18857 0.90640 0.90943 0.96267 0.98246 1.20926 1.27796 0.96578 1.01978 0.92978 1.25401 0.96153 0.98606 0.98210 1.69952 1.39151 1.12686 1.35603 0.85826 0.77199 0.78373 0.82015 1.19707 1.21861 1.21994 1.22010 0.98811 0.97379 0.87084 0.90268 0.93265 0.96240 0.96171 0.89756 0.91140 0.91951 0.96129 0.90528 0.89689 0.92017 0.90414 0.92238 0.92496 0.91341 0.97121 0.91762 0.94072 0.99994 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 9.59 127.69 1.22 2.44 16 2 N -0.54 -22.84 4.52 -922.57 -4.17 -27.00 16 3 C 0.06 2.29 5.46 86.32 0.47 2.76 16 4 C -0.09 -3.26 5.08 30.65 0.16 -3.10 16 5 C 0.10 4.16 1.72 45.00 0.08 4.23 16 6 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 7 N -0.53 -19.95 3.98 -870.65 -3.47 -23.41 16 8 C 0.05 1.50 5.31 86.32 0.46 1.96 16 9 C -0.11 -2.71 6.09 30.65 0.19 -2.53 16 10 C -0.11 -2.79 6.00 30.68 0.18 -2.60 16 11 C -0.11 -3.48 6.09 30.65 0.19 -3.29 16 12 C 0.06 2.30 4.74 86.33 0.41 2.71 16 13 C 0.05 2.54 1.57 -11.48 -0.02 2.52 16 14 H 0.00 -0.02 6.38 -2.39 -0.02 -0.03 16 15 C -0.43 -23.16 6.25 25.60 0.16 -23.00 16 16 H 0.05 2.88 6.72 -2.91 -0.02 2.86 16 17 C 0.01 0.64 5.30 84.65 0.45 1.08 16 18 N -0.93 -53.96 11.33 21.44 0.24 -53.72 16 19 Si 0.94 45.66 29.54 68.60 2.03 47.69 16 20 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 23 C 0.08 3.65 4.69 86.33 0.41 4.06 16 24 H 0.08 2.37 8.10 -2.39 -0.02 2.35 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 29 H 0.07 2.18 6.69 -2.39 -0.02 2.16 16 30 H 0.06 2.64 6.83 -2.39 -0.02 2.62 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 2.14 6.46 -2.39 -0.02 2.12 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.06 3.01 5.31 -2.39 -0.01 2.99 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 43 H 0.08 4.13 6.04 -2.39 -0.01 4.12 16 Total: -1.00 -60.00 313.32 -0.07 -60.07 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.95 Total: 9.13 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.35 Total: -12.75 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -7.39 Total: -104.13 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -60.00 -0.07 -60.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.179 kcal (2) G-P(sol) polarization free energy of solvation -60.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds