Wall clock time and date at job start Mon Mar 30 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46846 * 110.99819 * 2 1 4 4 C 1.53038 * 109.52174 * 174.16452 * 3 2 1 5 5 C 1.53119 * 109.28240 * 59.17697 * 4 3 2 6 6 H 1.09003 * 109.51950 * 62.24705 * 5 4 3 7 7 N 1.46898 * 109.52450 * 182.37585 * 5 4 3 8 8 C 1.46846 * 110.99852 * 299.38583 * 7 5 4 9 9 C 1.53047 * 109.52078 * 174.16036 * 8 7 5 10 10 C 1.53125 * 109.27642 * 59.17986 * 9 8 7 11 11 C 1.53122 * 109.16150 * 302.34676 * 10 9 8 12 12 C 1.46849 * 110.99956 * 175.17708 * 7 5 4 13 13 C 1.53119 * 109.16294 * 302.34985 * 5 4 3 14 14 H 1.08994 * 109.50380 * 177.59440 * 13 5 4 15 15 C 1.50697 * 109.49814 * 297.67149 * 13 5 4 16 16 H 1.08004 * 120.00610 * 5.39177 * 15 13 5 17 17 C 1.37882 * 119.99734 * 185.39057 * 15 13 5 18 18 N 1.31511 * 120.00063 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99833 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46997 * 119.99936 * 19 17 15 22 22 H 1.48504 * 109.46882 * 240.00000 * 19 17 15 23 23 C 1.46850 * 110.99797 * 235.79003 * 2 1 3 24 24 H 1.09004 * 109.47440 * 56.04560 * 1 2 3 25 25 H 1.09001 * 109.47038 * 176.04435 * 1 2 3 26 26 H 1.08999 * 109.46873 * 296.04254 * 1 2 3 27 27 H 1.08998 * 109.46266 * 294.17466 * 3 2 1 28 28 H 1.08991 * 109.46390 * 54.15650 * 3 2 1 29 29 H 1.09005 * 109.50208 * 179.11996 * 4 3 2 30 30 H 1.09002 * 109.50308 * 299.23940 * 4 3 2 31 31 H 1.08998 * 109.46836 * 294.17424 * 8 7 5 32 32 H 1.08996 * 109.46062 * 54.15262 * 8 7 5 33 33 H 1.08997 * 109.50149 * 299.24302 * 9 8 7 34 34 H 1.08991 * 109.50652 * 179.12413 * 9 8 7 35 35 H 1.09002 * 109.51988 * 182.44241 * 10 9 8 36 36 H 1.09001 * 109.51763 * 62.25047 * 10 9 8 37 37 H 1.08997 * 109.50554 * 297.71464 * 11 10 9 38 38 H 1.08991 * 109.50180 * 177.59443 * 11 10 9 39 39 H 1.08998 * 109.46455 * 305.85928 * 12 7 5 40 40 H 1.09001 * 109.46138 * 65.82286 * 12 7 5 41 41 H 0.97007 * 119.99751 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.46676 * 305.85189 * 23 2 1 43 43 H 1.09003 * 109.45996 * 65.82715 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5370 -1.0145 6 1 3.8886 1.0354 -1.9561 7 7 5.5757 0.4500 -0.8484 8 6 6.1858 1.7857 -0.8457 9 6 7.6777 1.6659 -0.5263 10 6 8.3503 0.7793 -1.5781 11 6 7.6646 -0.5898 -1.5941 12 6 6.1732 -0.4046 -1.8825 13 6 3.5181 -0.8715 -1.0210 14 1 3.9099 -1.4302 -1.8709 15 6 3.8829 -1.5798 0.2581 16 1 4.4080 -1.0491 1.0386 17 6 3.5463 -2.9055 0.4321 18 7 2.9074 -3.5519 -0.5184 19 14 3.9991 -3.7839 2.0174 20 1 4.7092 -2.8421 2.9197 21 1 2.7645 -4.2709 2.6835 22 1 4.8832 -4.9367 1.7094 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.7324 1.8608 -0.9376 28 1 1.5635 1.9256 0.8330 29 1 3.9098 2.3513 0.1309 30 1 3.7814 0.8567 1.0905 31 1 6.0601 2.2444 -1.8265 32 1 5.7013 2.4047 -0.0906 33 1 7.8040 1.2199 0.4602 34 1 8.1334 2.6559 -0.5397 35 1 9.4045 0.6558 -1.3302 36 1 8.2578 1.2445 -2.5595 37 1 7.7907 -1.0713 -0.6244 38 1 8.1109 -1.2112 -2.3704 39 1 5.6795 -1.3763 -1.8805 40 1 6.0474 0.0644 -2.8584 41 1 2.6702 -4.4846 -0.3958 42 1 1.5634 -1.7716 -1.1243 43 1 1.7324 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259731111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:56 Heat of formation + Delta-G solvation = 4.825128 kcal Electronic energy + Delta-G solvation = -20541.918277 eV Core-core repulsion = 17814.513206 eV Total energy + Delta-G solvation = -2727.405071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.12843 -37.22401 -33.81679 -32.53575 -30.58144 -30.14971 -29.19263 -25.59804 -24.79554 -23.28784 -22.87997 -21.03475 -20.88242 -19.19376 -18.57950 -15.90841 -15.64225 -14.69143 -14.37497 -14.22344 -14.16050 -13.79788 -13.73722 -13.16376 -12.99888 -12.86540 -12.37613 -12.13058 -11.86767 -11.76313 -11.40615 -11.12314 -10.81029 -10.76381 -10.58354 -10.46802 -10.42430 -10.21353 -10.08307 -9.81587 -9.78810 -9.47090 -8.87206 -8.70730 -8.11867 -7.39479 -7.21053 -5.76651 -3.70891 3.46382 3.54079 3.60067 4.58753 4.68083 4.92342 5.21339 5.26725 5.31110 5.58724 5.63942 5.72775 5.85056 5.85796 5.94352 5.98231 6.00608 6.03387 6.08960 6.12950 6.20245 6.28970 6.30195 6.39003 6.44176 6.46729 6.50487 6.54764 6.60926 6.77929 6.85013 6.94574 7.00273 7.17828 7.56751 7.66559 7.98236 8.03195 8.15107 8.25910 8.26543 8.71177 9.28282 9.88766 11.33869 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.009878 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.357225 B = 2833.968030 C = 3868.296365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.516 5.516 3 C 0.065 3.935 4 C -0.100 4.100 5 C 0.096 3.904 6 H 0.005 0.995 7 N -0.510 5.510 8 C 0.051 3.949 9 C -0.114 4.114 10 C -0.118 4.118 11 C -0.115 4.115 12 C 0.059 3.941 13 C 0.053 3.947 14 H 0.035 0.965 15 C -0.442 4.442 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.909 5.909 19 Si 0.887 3.113 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.070 3.930 24 H 0.007 0.993 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.011 0.989 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.012 0.988 41 H 0.253 0.747 42 H 0.099 0.901 43 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 9.252 -1.956 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.240 5.240 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.012 4.012 6 H 0.023 0.977 7 N -0.233 5.233 8 C -0.078 4.078 9 C -0.152 4.152 10 C -0.156 4.156 11 C -0.152 4.152 12 C -0.069 4.069 13 C 0.034 3.966 14 H 0.053 0.947 15 C -0.481 4.481 16 H 0.081 0.919 17 C -0.144 4.144 18 N -0.551 5.551 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.058 4.058 24 H 0.025 0.975 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges 4.019 8.636 -1.101 9.589 hybrid contribution -0.358 0.252 -0.748 0.866 sum 3.661 8.887 -1.848 9.788 Atomic orbital electron populations 1.22275 0.89627 1.01130 0.98761 1.61814 1.04983 1.11551 1.45669 1.21943 0.95959 0.90345 0.98142 1.21568 0.93436 0.97479 1.01260 1.21745 0.86046 0.99267 0.94094 0.97706 1.61787 1.04006 1.09746 1.47810 1.22120 0.94762 0.91960 0.98927 1.21553 0.95063 0.98702 0.99856 1.21570 0.98754 0.96676 0.98619 1.21563 0.95313 0.96152 1.02217 1.22069 0.94368 0.99459 0.90984 1.18909 0.89648 0.89212 0.98805 0.94733 1.20868 1.32727 0.94107 1.00396 0.91891 1.24849 0.95920 0.97689 0.95921 1.69881 1.42401 1.10018 1.32807 0.86612 0.77632 0.79412 0.84685 1.19990 1.21751 1.21892 1.22266 0.99506 0.97845 0.86202 0.97476 0.91818 0.92749 0.97066 0.92247 0.93956 0.89389 0.96521 0.91083 0.91161 0.92676 0.92669 0.93025 0.90927 0.92469 0.88489 0.96960 0.93715 0.88326 0.99867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.62 60.06 0.58 1.14 16 2 N -0.52 -11.01 4.52 -242.96 -1.10 -12.11 16 3 C 0.07 1.22 5.46 -3.83 -0.02 1.20 16 4 C -0.10 -1.91 4.84 -26.65 -0.13 -2.03 16 5 C 0.10 1.98 1.67 -67.59 -0.11 1.87 16 6 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 7 N -0.51 -9.80 4.00 -226.54 -0.91 -10.71 16 8 C 0.05 0.81 5.23 -3.83 -0.02 0.79 16 9 C -0.11 -1.60 6.09 -26.64 -0.16 -1.76 16 10 C -0.12 -1.62 6.00 -26.60 -0.16 -1.78 16 11 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 12 C 0.06 1.10 5.11 -3.83 -0.02 1.08 16 13 C 0.05 1.27 1.50 -91.69 -0.14 1.13 16 14 H 0.03 0.91 6.37 -51.93 -0.33 0.58 16 15 C -0.44 -11.62 6.96 -34.44 -0.24 -11.86 16 16 H 0.06 1.73 6.62 -52.48 -0.35 1.38 16 17 C 0.05 1.48 5.32 -17.82 -0.09 1.38 16 18 N -0.91 -25.75 11.74 55.43 0.65 -25.10 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C 0.07 1.63 4.75 -3.83 -0.02 1.62 16 24 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.06 1.18 8.02 -51.93 -0.42 0.77 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 29 H 0.04 0.71 6.43 -51.93 -0.33 0.37 16 30 H 0.09 1.89 6.72 -51.93 -0.35 1.54 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 1.11 6.08 -51.93 -0.32 0.79 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 2.11 5.87 -51.93 -0.30 1.80 16 40 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.10 2.59 6.41 -51.93 -0.33 2.26 16 43 H -0.02 -0.38 8.14 -51.93 -0.42 -0.80 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -27.70 314.57 -10.12 -37.82 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.78 Total: -2.44 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.70 Total: -9.20 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -1.35 Total: -47.92 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.70 -10.12 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.642 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds