Wall clock time and date at job start Mon Mar 30 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46846 * 110.99819 * 2 1 4 4 C 1.53038 * 109.52174 * 174.16452 * 3 2 1 5 5 C 1.53119 * 109.28240 * 59.17697 * 4 3 2 6 6 H 1.09003 * 109.51950 * 62.24705 * 5 4 3 7 7 N 1.46898 * 109.52450 * 182.37585 * 5 4 3 8 8 C 1.46846 * 110.99852 * 299.38583 * 7 5 4 9 9 C 1.53047 * 109.52078 * 174.16036 * 8 7 5 10 10 C 1.53125 * 109.27642 * 59.17986 * 9 8 7 11 11 C 1.53122 * 109.16150 * 302.34676 * 10 9 8 12 12 C 1.46849 * 110.99956 * 175.17708 * 7 5 4 13 13 C 1.53119 * 109.16294 * 302.34985 * 5 4 3 14 14 H 1.08994 * 109.50380 * 177.59440 * 13 5 4 15 15 C 1.50697 * 109.49814 * 297.67149 * 13 5 4 16 16 H 1.08004 * 120.00610 * 5.39177 * 15 13 5 17 17 C 1.37882 * 119.99734 * 185.39057 * 15 13 5 18 18 N 1.31511 * 120.00063 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99833 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47262 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46997 * 119.99936 * 19 17 15 22 22 H 1.48504 * 109.46882 * 240.00000 * 19 17 15 23 23 C 1.46850 * 110.99797 * 235.79003 * 2 1 3 24 24 H 1.09004 * 109.47440 * 56.04560 * 1 2 3 25 25 H 1.09001 * 109.47038 * 176.04435 * 1 2 3 26 26 H 1.08999 * 109.46873 * 296.04254 * 1 2 3 27 27 H 1.08998 * 109.46266 * 294.17466 * 3 2 1 28 28 H 1.08991 * 109.46390 * 54.15650 * 3 2 1 29 29 H 1.09005 * 109.50208 * 179.11996 * 4 3 2 30 30 H 1.09002 * 109.50308 * 299.23940 * 4 3 2 31 31 H 1.08998 * 109.46836 * 294.17424 * 8 7 5 32 32 H 1.08996 * 109.46062 * 54.15262 * 8 7 5 33 33 H 1.08997 * 109.50149 * 299.24302 * 9 8 7 34 34 H 1.08991 * 109.50652 * 179.12413 * 9 8 7 35 35 H 1.09002 * 109.51988 * 182.44241 * 10 9 8 36 36 H 1.09001 * 109.51763 * 62.25047 * 10 9 8 37 37 H 1.08997 * 109.50554 * 297.71464 * 11 10 9 38 38 H 1.08991 * 109.50180 * 177.59443 * 11 10 9 39 39 H 1.08998 * 109.46455 * 305.85928 * 12 7 5 40 40 H 1.09001 * 109.46138 * 65.82286 * 12 7 5 41 41 H 0.97007 * 119.99751 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.46676 * 305.85189 * 23 2 1 43 43 H 1.09003 * 109.45996 * 65.82715 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1188 0.5370 -1.0145 6 1 3.8886 1.0354 -1.9561 7 7 5.5757 0.4500 -0.8484 8 6 6.1858 1.7857 -0.8457 9 6 7.6777 1.6659 -0.5263 10 6 8.3503 0.7793 -1.5781 11 6 7.6646 -0.5898 -1.5941 12 6 6.1732 -0.4046 -1.8825 13 6 3.5181 -0.8715 -1.0210 14 1 3.9099 -1.4302 -1.8709 15 6 3.8829 -1.5798 0.2581 16 1 4.4080 -1.0491 1.0386 17 6 3.5463 -2.9055 0.4321 18 7 2.9074 -3.5519 -0.5184 19 14 3.9991 -3.7839 2.0174 20 1 4.7092 -2.8421 2.9197 21 1 2.7645 -4.2709 2.6835 22 1 4.8832 -4.9367 1.7094 23 6 1.9952 -0.7708 -1.1338 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.7324 1.8608 -0.9376 28 1 1.5635 1.9256 0.8330 29 1 3.9098 2.3513 0.1309 30 1 3.7814 0.8567 1.0905 31 1 6.0601 2.2444 -1.8265 32 1 5.7013 2.4047 -0.0906 33 1 7.8040 1.2199 0.4602 34 1 8.1334 2.6559 -0.5397 35 1 9.4045 0.6558 -1.3302 36 1 8.2578 1.2445 -2.5595 37 1 7.7907 -1.0713 -0.6244 38 1 8.1109 -1.2112 -2.3704 39 1 5.6795 -1.3763 -1.8805 40 1 6.0474 0.0644 -2.8584 41 1 2.6702 -4.4846 -0.3958 42 1 1.5634 -1.7716 -1.1243 43 1 1.7324 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259731111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:56 Heat of formation + Delta-G solvation = -12.158723 kcal Electronic energy + Delta-G solvation = -20542.654752 eV Core-core repulsion = 17814.513206 eV Total energy + Delta-G solvation = -2728.141546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67854 -38.70608 -35.37357 -34.42566 -32.01056 -31.64084 -30.88624 -27.18502 -26.69826 -24.68736 -24.39017 -22.59613 -22.42551 -20.50473 -20.36220 -17.66616 -17.37551 -16.51642 -15.97742 -15.75817 -15.61763 -15.40769 -15.15754 -14.61020 -14.46986 -14.34742 -13.90531 -13.64448 -13.55607 -13.20872 -12.98158 -12.78605 -12.74249 -12.42461 -12.18582 -11.97541 -11.92825 -11.79002 -11.56544 -11.45916 -11.29980 -10.93473 -10.76242 -10.55687 -10.19003 -8.90092 -8.84655 -7.88544 -5.86360 1.45056 1.48506 1.58626 2.59888 3.15106 3.34142 3.48324 3.99670 4.02474 4.11418 4.19890 4.33885 4.38842 4.43474 4.50113 4.57907 4.59007 4.67354 4.69861 4.75532 4.83240 4.89444 4.93285 4.97442 5.03004 5.05405 5.13784 5.17634 5.22864 5.26395 5.31269 5.44474 5.52165 5.60469 5.69665 5.76450 6.08878 6.37252 6.49730 6.56849 6.62511 6.73430 7.15662 7.74572 9.21002 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.009878 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.357225 B = 2833.968030 C = 3868.296365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.540 5.540 3 C 0.065 3.935 4 C -0.092 4.092 5 C 0.102 3.898 6 H 0.003 0.997 7 N -0.526 5.526 8 C 0.049 3.951 9 C -0.111 4.111 10 C -0.113 4.113 11 C -0.111 4.111 12 C 0.062 3.938 13 C 0.054 3.946 14 H 0.001 0.999 15 C -0.429 4.429 16 H 0.051 0.949 17 C 0.007 3.993 18 N -0.934 5.934 19 Si 0.937 3.063 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.292 1.292 23 C 0.081 3.919 24 H 0.023 0.977 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.250 0.750 42 H 0.064 0.936 43 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 11.652 -1.346 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.265 5.265 3 C -0.063 4.063 4 C -0.130 4.130 5 C -0.006 4.006 6 H 0.021 0.979 7 N -0.250 5.250 8 C -0.078 4.078 9 C -0.148 4.148 10 C -0.150 4.150 11 C -0.149 4.149 12 C -0.066 4.066 13 C 0.035 3.965 14 H 0.019 0.981 15 C -0.468 4.468 16 H 0.069 0.931 17 C -0.188 4.188 18 N -0.578 5.578 19 Si 0.766 3.234 20 H -0.196 1.196 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.048 4.048 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges 4.927 11.052 -0.480 12.110 hybrid contribution -0.644 -0.472 -0.966 1.253 sum 4.282 10.581 -1.446 11.505 Atomic orbital electron populations 1.22290 0.87711 1.00873 1.00657 1.61739 1.06990 1.13169 1.44556 1.22030 0.95527 0.89048 0.99720 1.21505 0.93995 0.98546 0.98954 1.21572 0.87223 0.97021 0.94806 0.97915 1.61776 1.03307 1.11931 1.48032 1.22230 0.96095 0.90009 0.99495 1.21559 0.93636 1.00365 0.99262 1.21545 0.99586 0.94739 0.99147 1.21534 0.93555 0.98199 1.01633 1.21953 0.95912 0.97398 0.91296 1.18791 0.90381 0.91009 0.96346 0.98123 1.20925 1.31282 0.93948 1.00623 0.93059 1.25432 0.96536 0.98639 0.98157 1.70008 1.43754 1.09919 1.34135 0.85821 0.77104 0.78433 0.82043 1.19641 1.21974 1.21920 1.21938 0.98796 0.96645 0.87419 0.95882 0.93236 0.90347 0.96011 0.89633 0.90831 0.91860 0.95915 0.90362 0.92226 0.89639 0.90454 0.92036 0.92671 0.91176 0.92731 0.96608 0.94134 0.91811 0.99591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 9.62 127.69 1.23 2.38 16 2 N -0.54 -22.63 4.52 -922.59 -4.17 -26.80 16 3 C 0.07 2.28 5.46 86.33 0.47 2.75 16 4 C -0.09 -3.36 4.84 30.65 0.15 -3.21 16 5 C 0.10 4.17 1.67 45.00 0.08 4.25 16 6 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 7 N -0.53 -19.99 4.00 -870.64 -3.48 -23.48 16 8 C 0.05 1.46 5.23 86.33 0.45 1.92 16 9 C -0.11 -2.75 6.09 30.65 0.19 -2.56 16 10 C -0.11 -2.74 6.00 30.68 0.18 -2.56 16 11 C -0.11 -3.44 6.09 30.65 0.19 -3.26 16 12 C 0.06 2.36 5.11 86.32 0.44 2.80 16 13 C 0.05 2.65 1.50 -11.49 -0.02 2.63 16 14 H 0.00 0.05 6.37 -2.39 -0.02 0.03 16 15 C -0.43 -23.11 6.96 25.60 0.18 -22.93 16 16 H 0.05 2.85 6.62 -2.91 -0.02 2.84 16 17 C 0.01 0.40 5.32 84.66 0.45 0.85 16 18 N -0.93 -54.96 11.74 21.45 0.25 -54.71 16 19 Si 0.94 46.07 29.54 68.60 2.03 48.09 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 23 C 0.08 3.87 4.75 86.33 0.41 4.28 16 24 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 1.83 8.02 -2.39 -0.02 1.81 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 29 H 0.07 2.22 6.43 -2.38 -0.02 2.21 16 30 H 0.06 2.64 6.72 -2.39 -0.02 2.63 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 2.20 6.08 -2.39 -0.01 2.18 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 2.51 5.87 -2.39 -0.01 2.50 16 40 H 0.02 0.57 8.14 -2.39 -0.02 0.56 16 41 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 42 H 0.06 3.49 6.41 -2.39 -0.02 3.48 16 43 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 Total: -1.00 -61.15 314.57 -0.03 -61.17 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.95 Total: 8.39 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.40 Total: -12.67 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -7.40 Total: -104.99 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -61.15 -0.03 -61.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.016 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds