Wall clock time and date at job start Mon Mar 30 2020 04:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00009 * 2 1 4 4 C 1.53036 * 109.52158 * 185.84363 * 3 2 1 5 5 C 1.53118 * 109.27879 * 300.81932 * 4 3 2 6 6 H 1.09000 * 109.52325 * 297.74843 * 5 4 3 7 7 N 1.46900 * 109.52414 * 177.56117 * 5 4 3 8 8 C 1.46849 * 111.00171 * 72.88690 * 7 5 4 9 9 C 1.53029 * 109.52626 * 174.16133 * 8 7 5 10 10 C 1.53120 * 109.27836 * 59.17818 * 9 8 7 11 11 C 1.53114 * 109.16353 * 302.34962 * 10 9 8 12 12 C 1.46848 * 111.00156 * 308.68086 * 7 5 4 13 13 C 1.53110 * 109.15945 * 57.65501 * 5 4 3 14 14 H 1.09004 * 109.50514 * 62.33187 * 13 5 4 15 15 C 1.50709 * 109.50383 * 182.40355 * 13 5 4 16 16 H 1.08000 * 119.99582 * 28.24983 * 15 13 5 17 17 C 1.37872 * 120.00063 * 208.52124 * 15 13 5 18 18 N 1.31518 * 119.99847 * 186.75671 * 17 15 13 19 19 Si 1.86796 * 120.00103 * 6.76040 * 17 15 13 20 20 H 1.48500 * 109.47356 * 84.79241 * 19 17 15 21 21 H 1.48503 * 109.46997 * 204.79157 * 19 17 15 22 22 H 1.48500 * 109.47181 * 324.79045 * 19 17 15 23 23 C 1.46842 * 110.99934 * 124.25474 * 2 1 3 24 24 H 1.08997 * 109.47386 * 63.95119 * 1 2 3 25 25 H 1.08999 * 109.47406 * 183.95717 * 1 2 3 26 26 H 1.09005 * 109.46924 * 303.95369 * 1 2 3 27 27 H 1.08991 * 109.46715 * 65.82559 * 3 2 1 28 28 H 1.09002 * 109.46071 * 305.85679 * 3 2 1 29 29 H 1.09000 * 109.50198 * 180.87743 * 4 3 2 30 30 H 1.09004 * 109.50332 * 60.76273 * 4 3 2 31 31 H 1.09006 * 109.46113 * 294.18214 * 8 7 5 32 32 H 1.09004 * 109.45927 * 54.14274 * 8 7 5 33 33 H 1.09004 * 109.50567 * 299.23812 * 9 8 7 34 34 H 1.09004 * 109.54118 * 179.14109 * 9 8 7 35 35 H 1.08997 * 109.52572 * 182.43698 * 10 9 8 36 36 H 1.09005 * 109.52225 * 62.25482 * 10 9 8 37 37 H 1.09001 * 109.50119 * 297.70952 * 11 10 9 38 38 H 1.08996 * 109.53809 * 177.61321 * 11 10 9 39 39 H 1.09007 * 109.46002 * 305.85355 * 12 7 5 40 40 H 1.09002 * 109.46542 * 65.82857 * 12 7 5 41 41 H 0.96998 * 119.99571 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.49930 * 54.15460 * 23 2 1 43 43 H 1.09008 * 109.42792 * 294.19275 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1469 5 6 4.1188 0.5369 1.0142 6 1 3.8888 1.0354 1.9559 7 7 5.5756 0.4485 0.8472 8 6 6.2172 1.7385 1.1315 9 6 7.7380 1.5735 1.0903 10 6 8.1544 1.0694 -0.2943 11 6 7.4352 -0.2505 -0.5859 12 6 5.9232 -0.0326 -0.4960 13 6 3.5182 -0.8714 1.0207 14 1 3.7820 -1.3839 0.0955 15 6 4.0599 -1.6441 2.1958 16 1 4.3660 -1.1222 3.0903 17 6 4.1699 -3.0167 2.1266 18 7 4.5157 -3.7033 3.1938 19 14 3.8281 -3.9012 0.5173 20 1 5.0550 -3.8988 -0.3193 21 1 3.4236 -5.3022 0.7986 22 1 2.7338 -3.2060 -0.2070 23 6 1.9952 -0.7716 1.1331 24 1 -0.3634 0.4513 -0.9232 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8525 27 1 1.7326 1.8608 0.9375 28 1 1.5634 1.9257 -0.8330 29 1 3.9099 2.3512 -0.1312 30 1 3.7813 0.8567 -1.0908 31 1 5.9107 2.4693 0.3831 32 1 5.9160 2.0836 2.1207 33 1 8.0466 0.8530 1.8478 34 1 8.2144 2.5341 1.2862 35 1 9.2324 0.9091 -0.3147 36 1 7.8808 1.8076 -1.0482 37 1 7.7391 -0.9997 0.1452 38 1 7.6946 -0.5934 -1.5875 39 1 5.4085 -0.9739 -0.6890 40 1 5.6182 0.7065 -1.2368 41 1 4.5935 -4.6689 3.1450 42 1 1.5639 -1.7726 1.1233 43 1 1.7319 -0.2721 2.0655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259731113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:59 Heat of formation + Delta-G solvation = 1.104089 kcal Electronic energy + Delta-G solvation = -20512.104001 eV Core-core repulsion = 17784.537574 eV Total energy + Delta-G solvation = -2727.566427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.43329 -37.36130 -34.03925 -32.64351 -30.53629 -30.19516 -30.13665 -25.84760 -24.91890 -23.51509 -22.71753 -21.62964 -20.93738 -19.33686 -18.23248 -16.71008 -15.92596 -14.84113 -14.63050 -14.40606 -14.19802 -13.94485 -13.70786 -13.47761 -13.23938 -12.83825 -12.68665 -12.30546 -12.24590 -11.89782 -11.55604 -11.33419 -11.10578 -11.05571 -10.85190 -10.53172 -10.44535 -10.35930 -10.14987 -10.03256 -9.78038 -9.57774 -9.25539 -8.88478 -8.35306 -7.75439 -7.35390 -5.93066 -3.87743 3.38953 3.46993 3.52890 4.47259 4.55364 4.58889 5.17237 5.23715 5.26502 5.36242 5.40643 5.52144 5.60444 5.67333 5.72784 5.79220 5.83206 5.90995 5.94501 5.99100 6.06181 6.13937 6.15590 6.20595 6.23298 6.27293 6.39804 6.41702 6.52861 6.53442 6.56852 6.65032 6.76568 6.85067 7.16220 7.31628 7.63041 7.66097 7.87374 7.96563 8.03341 8.69696 9.15684 9.71377 11.20731 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.010892 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.769451 B = 2570.142280 C = 3703.001914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.067 3.933 4 C -0.153 4.153 5 C 0.104 3.896 6 H 0.068 0.932 7 N -0.504 5.504 8 C 0.056 3.944 9 C -0.116 4.116 10 C -0.117 4.117 11 C -0.118 4.118 12 C 0.059 3.941 13 C 0.030 3.970 14 H 0.039 0.961 15 C -0.478 4.478 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.904 5.904 19 Si 0.863 3.137 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.259 1.259 23 C 0.061 3.939 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.018 0.982 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.024 0.976 41 H 0.260 0.740 42 H 0.066 0.934 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 10.517 -7.736 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.276 5.276 3 C -0.062 4.062 4 C -0.193 4.193 5 C -0.005 4.005 6 H 0.086 0.914 7 N -0.226 5.226 8 C -0.072 4.072 9 C -0.153 4.153 10 C -0.154 4.154 11 C -0.156 4.156 12 C -0.069 4.069 13 C 0.011 3.989 14 H 0.057 0.943 15 C -0.517 4.517 16 H 0.091 0.909 17 C -0.128 4.128 18 N -0.543 5.543 19 Si 0.691 3.309 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.184 1.184 23 C -0.067 4.067 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.617 9.756 -7.740 12.468 hybrid contribution -0.784 0.380 -0.663 1.095 sum -0.167 10.135 -8.403 13.167 Atomic orbital electron populations 1.22294 0.88847 1.01398 0.99596 1.62085 1.06371 1.13037 1.46089 1.21881 0.95394 0.89719 0.99158 1.22384 0.95156 0.99867 1.01865 1.21770 0.85558 0.97748 0.95421 0.91408 1.61925 1.08810 1.25301 1.26585 1.22041 0.94381 0.90823 0.99950 1.21564 0.95527 1.00566 0.97681 1.21540 0.99366 0.97421 0.97092 1.21595 0.95344 0.97645 1.01044 1.22048 0.95445 1.00027 0.89423 1.19182 0.89298 0.92073 0.98368 0.94329 1.20740 1.40197 0.90931 0.99799 0.90913 1.24963 0.94890 0.97429 0.95562 1.69912 1.49320 1.06859 1.28196 0.87081 0.79523 0.78739 0.85542 1.20330 1.22097 1.18363 1.22697 0.98761 0.96384 0.88840 0.92414 0.91807 0.96319 0.95591 0.92126 0.92873 0.91224 0.96115 0.91420 0.90899 0.92532 0.92535 0.92971 0.90757 0.92480 0.90468 0.95830 0.93011 0.91530 0.95588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.62 60.06 0.58 0.99 16 2 N -0.55 -10.15 4.91 -242.97 -1.19 -11.34 16 3 C 0.07 1.10 5.46 -3.84 -0.02 1.08 16 4 C -0.15 -2.58 4.62 -26.65 -0.12 -2.70 16 5 C 0.10 2.05 1.65 -67.59 -0.11 1.94 16 6 H 0.07 1.40 7.94 -51.93 -0.41 0.99 16 7 N -0.50 -9.68 4.24 -226.55 -0.96 -10.64 16 8 C 0.06 0.90 5.18 -3.84 -0.02 0.88 16 9 C -0.12 -1.65 6.09 -26.65 -0.16 -1.82 16 10 C -0.12 -1.58 6.00 -26.61 -0.16 -1.74 16 11 C -0.12 -1.88 6.09 -26.66 -0.16 -2.04 16 12 C 0.06 1.05 4.47 -3.84 -0.02 1.04 16 13 C 0.03 0.70 1.23 -91.69 -0.11 0.59 16 14 H 0.04 0.94 3.90 -51.93 -0.20 0.73 16 15 C -0.48 -13.08 8.53 -34.44 -0.29 -13.38 16 16 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.86 21.70 26.49 -169.99 -4.50 17.20 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 22 H -0.26 -6.32 6.41 56.52 0.36 -5.95 16 23 C 0.06 1.30 4.58 -3.84 -0.02 1.28 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.96 8.02 -51.93 -0.42 0.55 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.05 0.80 7.04 -51.93 -0.37 0.44 16 30 H 0.07 1.22 6.31 -51.93 -0.33 0.89 16 31 H 0.02 0.31 7.04 -51.93 -0.37 -0.05 16 32 H 0.07 1.08 7.99 -51.93 -0.41 0.67 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.58 6.29 -51.92 -0.33 1.26 16 40 H 0.02 0.39 6.52 -51.93 -0.34 0.06 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.51 7.16 -51.93 -0.37 1.14 16 43 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -29.50 313.33 -9.67 -39.17 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.79 Total: -0.30 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.72 Total: -11.92 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.38 Total: -48.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.50 Total: 17.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.50 -9.67 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259731113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.275 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds