Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46847 * 111.00472 * 2 1 4 4 C 1.53036 * 109.52743 * 185.84209 * 3 2 1 5 5 C 1.53122 * 109.30781 * 300.84439 * 4 3 2 6 6 C 1.53114 * 109.16148 * 57.59833 * 5 4 3 7 7 H 1.08995 * 109.50679 * 62.36104 * 6 5 4 8 8 N 1.46898 * 109.50742 * 182.44315 * 6 5 4 9 9 C 1.46853 * 111.00242 * 55.70495 * 8 6 5 10 10 C 1.53024 * 109.52407 * 185.84303 * 9 8 6 11 11 C 1.53124 * 109.27956 * 300.82202 * 10 9 8 12 12 C 1.53111 * 109.16149 * 57.65513 * 11 10 9 13 13 C 1.46846 * 111.00153 * 179.97438 * 8 6 5 14 14 H 1.08995 * 109.45185 * 294.16323 * 13 8 6 15 15 C 1.50701 * 109.46308 * 54.14566 * 13 8 6 16 16 H 1.08002 * 119.99761 * 0.04641 * 15 13 8 17 17 C 1.37871 * 119.99694 * 180.33204 * 15 13 8 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.46842 * 111.00494 * 124.21529 * 2 1 3 24 24 H 1.09002 * 109.46833 * 295.78484 * 1 2 3 25 25 H 1.09000 * 109.47595 * 55.78046 * 1 2 3 26 26 H 1.08998 * 109.47385 * 175.79192 * 1 2 3 27 27 H 1.09000 * 109.46335 * 305.86386 * 3 2 1 28 28 H 1.09007 * 109.45694 * 65.83972 * 3 2 1 29 29 H 1.08992 * 109.50267 * 60.76260 * 4 3 2 30 30 H 1.09000 * 109.50490 * 180.88298 * 4 3 2 31 31 H 1.08993 * 109.49354 * 297.70690 * 5 4 3 32 32 H 1.09007 * 109.55113 * 177.51652 * 5 4 3 33 33 H 1.09000 * 109.45698 * 65.82410 * 9 8 6 34 34 H 1.09000 * 109.45318 * 305.85848 * 9 8 6 35 35 H 1.09005 * 109.50510 * 180.88392 * 10 9 8 36 36 H 1.09002 * 109.53839 * 60.78161 * 10 9 8 37 37 H 1.09000 * 109.52166 * 297.74826 * 11 10 9 38 38 H 1.09000 * 109.52094 * 177.56326 * 11 10 9 39 39 H 1.08996 * 109.50433 * 182.40467 * 12 11 10 40 40 H 1.09010 * 109.53546 * 62.30738 * 12 11 10 41 41 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46130 * 54.14186 * 23 2 1 43 43 H 1.09001 * 109.46324 * 294.17544 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1195 0.5365 1.0137 6 6 3.5182 -0.8716 1.0206 7 1 3.7813 -1.3843 0.0955 8 7 4.0461 -1.6248 2.1660 9 6 3.7967 -0.9115 3.4251 10 6 4.4845 -1.6494 4.5758 11 6 3.9376 -3.0772 4.6595 12 6 4.1666 -3.7823 3.3198 13 6 3.4890 -2.9830 2.2046 14 1 2.4173 -2.9304 2.3963 15 6 3.7299 -3.6623 0.8811 16 1 4.2460 -3.1375 0.0908 17 6 3.2861 -4.9517 0.6773 18 7 2.6576 -5.5907 1.6397 19 14 3.5777 -5.7909 -0.9659 20 1 4.8775 -6.5084 -0.9315 21 1 2.4840 -6.7608 -1.2274 22 1 3.6037 -4.7711 -2.0449 23 6 1.9952 -0.7708 1.1336 24 1 -0.3633 0.4470 0.9254 25 1 -0.3634 0.5779 -0.8497 26 1 -0.3634 -1.0249 -0.0754 27 1 1.5634 1.9258 -0.8329 28 1 1.7327 1.8606 0.9378 29 1 3.7813 0.8568 -1.0906 30 1 3.9099 2.3511 -0.1310 31 1 3.8901 1.0352 1.9553 32 1 5.2004 0.4703 0.8893 33 1 2.7236 -0.8679 3.6113 34 1 4.1943 0.1009 3.3537 35 1 4.2861 -1.1283 5.5125 36 1 5.5594 -1.6813 4.3977 37 1 2.8699 -3.0461 4.8770 38 1 4.4557 -3.6199 5.4501 39 1 3.7412 -4.7850 3.3590 40 1 5.2363 -3.8483 3.1208 41 1 2.3451 -6.4977 1.4961 42 1 1.5634 -1.7716 1.1240 43 1 1.7325 -0.2710 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259738705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = 1.401233 kcal Electronic energy + Delta-G solvation = -20525.323896 eV Core-core repulsion = 17797.770354 eV Total energy + Delta-G solvation = -2727.553542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.40279 -37.12955 -33.55574 -32.88003 -31.93124 -29.47148 -28.25119 -26.40805 -25.17573 -23.43608 -22.67076 -21.48224 -20.76170 -19.19383 -18.14379 -16.38838 -15.62207 -15.01264 -14.71079 -14.45620 -14.19020 -13.71098 -13.55137 -13.30490 -12.93367 -12.61906 -12.46417 -12.30686 -12.07799 -11.90533 -11.45394 -11.27317 -10.94067 -10.87207 -10.68536 -10.54737 -10.39933 -10.19405 -10.04692 -9.90566 -9.79040 -9.52784 -9.08173 -8.67915 -8.33035 -7.96787 -7.04733 -5.96296 -3.99927 3.35163 3.41490 3.46289 4.27045 4.46515 4.92995 5.24571 5.28609 5.34362 5.38341 5.50869 5.62319 5.66840 5.71336 5.74415 5.89139 5.90876 5.95330 6.04447 6.08525 6.13217 6.22777 6.28850 6.40691 6.40977 6.45479 6.49886 6.61076 6.80302 6.82796 6.91107 6.99448 7.19444 7.34602 7.42368 7.45349 7.65603 7.80238 7.89575 8.27700 8.39692 8.67383 9.06892 9.64995 11.10049 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.009765 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.760864 B = 2866.811261 C = 3908.892092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.537 5.537 3 C 0.057 3.943 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.101 3.899 7 H 0.101 0.899 8 N -0.525 5.525 9 C 0.051 3.949 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.220 3.780 14 H 0.000 1.000 15 C -0.499 4.499 16 H 0.063 0.937 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.273 1.273 23 C 0.032 3.968 24 H 0.017 0.983 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.259 0.741 42 H 0.089 0.911 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 11.279 0.748 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.262 5.262 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.008 4.008 7 H 0.118 0.882 8 N -0.249 5.249 9 C -0.077 4.077 10 C -0.149 4.149 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.114 3.886 14 H 0.018 0.982 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.198 1.198 23 C -0.097 4.097 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.248 10.813 0.307 10.820 hybrid contribution -1.173 -0.084 0.117 1.182 sum -1.421 10.729 0.423 10.831 Atomic orbital electron populations 1.22315 0.88063 1.02240 0.99432 1.61871 1.06914 1.12847 1.44540 1.22071 0.95976 0.89674 0.99412 1.21552 0.94217 0.99516 0.99983 1.21780 1.00536 0.95982 0.97364 1.21571 0.89726 0.92534 0.96963 0.88154 1.62294 1.58751 1.03854 1.00033 1.22074 0.97046 0.97098 0.91531 1.21541 1.00551 0.96527 0.96267 1.21683 0.99359 0.95320 0.99648 1.21655 0.99952 1.01494 0.91352 1.19204 0.92008 0.82399 0.95007 0.98236 1.21160 1.36219 0.98386 0.98002 0.91852 1.24896 0.95167 0.97300 0.96668 1.69885 1.39198 1.12311 1.31960 0.86574 0.77615 0.79346 0.84372 1.20815 1.21485 1.19789 1.22851 0.98769 0.98536 0.89594 0.96446 0.91980 0.91249 0.91491 0.95774 0.91049 0.92099 0.92792 0.91415 0.96394 0.92176 0.93529 0.91903 0.93570 0.93832 0.88903 0.93881 0.93104 0.89285 0.96267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.59 60.06 0.58 0.99 16 2 N -0.54 -9.09 4.91 -242.97 -1.19 -10.28 16 3 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 4 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 5 C -0.12 -1.90 5.00 -26.61 -0.13 -2.03 16 6 C 0.10 1.99 2.08 -67.63 -0.14 1.85 16 7 H 0.10 2.25 6.13 -51.93 -0.32 1.93 16 8 N -0.53 -11.15 4.51 -220.06 -0.99 -12.14 16 9 C 0.05 0.95 4.68 -3.84 -0.02 0.93 16 10 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16 11 C -0.12 -2.43 6.00 -26.61 -0.16 -2.59 16 12 C -0.11 -2.53 5.14 -26.66 -0.14 -2.67 16 13 C 0.22 5.40 1.26 -68.88 -0.09 5.31 16 14 H 0.00 0.00 6.65 -51.93 -0.35 -0.34 16 15 C -0.50 -13.40 7.91 -34.44 -0.27 -13.67 16 16 H 0.06 1.72 6.26 -52.49 -0.33 1.40 16 17 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 18 N -0.89 -25.16 11.34 55.43 0.63 -24.53 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.03 0.61 4.06 -3.83 -0.02 0.59 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.84 6.09 -51.93 -0.32 0.52 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.02 0.35 6.69 -51.93 -0.35 0.00 16 34 H 0.06 1.01 5.85 -51.93 -0.30 0.70 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.46 6.11 -51.93 -0.32 2.14 16 40 H 0.04 1.05 8.14 -51.92 -0.42 0.63 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.09 2.01 6.56 -51.93 -0.34 1.67 16 43 H 0.02 0.37 6.59 -51.93 -0.34 0.02 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -27.49 311.29 -10.30 -37.79 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.59 Total: 0.91 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.83 Total: -12.84 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -1.56 Total: -46.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.49 -10.30 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.187 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds