Wall clock time and date at job start Mon Mar 30 2020 04:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46847 * 111.00472 * 2 1 4 4 C 1.53036 * 109.52743 * 185.84209 * 3 2 1 5 5 C 1.53122 * 109.30781 * 300.84439 * 4 3 2 6 6 C 1.53114 * 109.16148 * 57.59833 * 5 4 3 7 7 H 1.08995 * 109.50679 * 62.36104 * 6 5 4 8 8 N 1.46898 * 109.50742 * 182.44315 * 6 5 4 9 9 C 1.46853 * 111.00242 * 55.70495 * 8 6 5 10 10 C 1.53024 * 109.52407 * 185.84303 * 9 8 6 11 11 C 1.53124 * 109.27956 * 300.82202 * 10 9 8 12 12 C 1.53111 * 109.16149 * 57.65513 * 11 10 9 13 13 C 1.46846 * 111.00153 * 179.97438 * 8 6 5 14 14 H 1.08995 * 109.45185 * 294.16323 * 13 8 6 15 15 C 1.50701 * 109.46308 * 54.14566 * 13 8 6 16 16 H 1.08002 * 119.99761 * 0.04641 * 15 13 8 17 17 C 1.37871 * 119.99694 * 180.33204 * 15 13 8 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.46842 * 111.00494 * 124.21529 * 2 1 3 24 24 H 1.09002 * 109.46833 * 295.78484 * 1 2 3 25 25 H 1.09000 * 109.47595 * 55.78046 * 1 2 3 26 26 H 1.08998 * 109.47385 * 175.79192 * 1 2 3 27 27 H 1.09000 * 109.46335 * 305.86386 * 3 2 1 28 28 H 1.09007 * 109.45694 * 65.83972 * 3 2 1 29 29 H 1.08992 * 109.50267 * 60.76260 * 4 3 2 30 30 H 1.09000 * 109.50490 * 180.88298 * 4 3 2 31 31 H 1.08993 * 109.49354 * 297.70690 * 5 4 3 32 32 H 1.09007 * 109.55113 * 177.51652 * 5 4 3 33 33 H 1.09000 * 109.45698 * 65.82410 * 9 8 6 34 34 H 1.09000 * 109.45318 * 305.85848 * 9 8 6 35 35 H 1.09005 * 109.50510 * 180.88392 * 10 9 8 36 36 H 1.09002 * 109.53839 * 60.78161 * 10 9 8 37 37 H 1.09000 * 109.52166 * 297.74826 * 11 10 9 38 38 H 1.09000 * 109.52094 * 177.56326 * 11 10 9 39 39 H 1.08996 * 109.50433 * 182.40467 * 12 11 10 40 40 H 1.09010 * 109.53546 * 62.30738 * 12 11 10 41 41 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.46130 * 54.14186 * 23 2 1 43 43 H 1.09001 * 109.46324 * 294.17544 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1195 0.5365 1.0137 6 6 3.5182 -0.8716 1.0206 7 1 3.7813 -1.3843 0.0955 8 7 4.0461 -1.6248 2.1660 9 6 3.7967 -0.9115 3.4251 10 6 4.4845 -1.6494 4.5758 11 6 3.9376 -3.0772 4.6595 12 6 4.1666 -3.7823 3.3198 13 6 3.4890 -2.9830 2.2046 14 1 2.4173 -2.9304 2.3963 15 6 3.7299 -3.6623 0.8811 16 1 4.2460 -3.1375 0.0908 17 6 3.2861 -4.9517 0.6773 18 7 2.6576 -5.5907 1.6397 19 14 3.5777 -5.7909 -0.9659 20 1 4.8775 -6.5084 -0.9315 21 1 2.4840 -6.7608 -1.2274 22 1 3.6037 -4.7711 -2.0449 23 6 1.9952 -0.7708 1.1336 24 1 -0.3633 0.4470 0.9254 25 1 -0.3634 0.5779 -0.8497 26 1 -0.3634 -1.0249 -0.0754 27 1 1.5634 1.9258 -0.8329 28 1 1.7327 1.8606 0.9378 29 1 3.7813 0.8568 -1.0906 30 1 3.9099 2.3511 -0.1310 31 1 3.8901 1.0352 1.9553 32 1 5.2004 0.4703 0.8893 33 1 2.7236 -0.8679 3.6113 34 1 4.1943 0.1009 3.3537 35 1 4.2861 -1.1283 5.5125 36 1 5.5594 -1.6813 4.3977 37 1 2.8699 -3.0461 4.8770 38 1 4.4557 -3.6199 5.4501 39 1 3.7412 -4.7850 3.3590 40 1 5.2363 -3.8483 3.1208 41 1 2.3451 -6.4977 1.4961 42 1 1.5634 -1.7716 1.1240 43 1 1.7325 -0.2710 2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259738705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:48 Heat of formation + Delta-G solvation = -16.524691 kcal Electronic energy + Delta-G solvation = -20526.101222 eV Core-core repulsion = 17797.770354 eV Total energy + Delta-G solvation = -2728.330868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92349 -38.62761 -35.10841 -34.78474 -33.30919 -31.31054 -29.75056 -27.66850 -27.14475 -25.02581 -24.07749 -23.03892 -22.30449 -20.75722 -19.74283 -18.33384 -17.21837 -16.70680 -16.16460 -15.93007 -15.66783 -15.30752 -15.06536 -14.78256 -14.54770 -14.18761 -14.10409 -13.78152 -13.57907 -13.18263 -13.05722 -12.85228 -12.61340 -12.55433 -12.37015 -12.18724 -11.97347 -11.76195 -11.58587 -11.55985 -11.35656 -11.24594 -10.74856 -10.60820 -10.36030 -9.29275 -8.77274 -8.07512 -6.17356 1.40487 1.41219 1.51618 2.43656 2.97828 3.20101 3.43178 3.93775 3.98977 4.11162 4.15405 4.18936 4.28583 4.36070 4.40246 4.49124 4.58251 4.66341 4.68125 4.73137 4.80825 4.85712 4.92285 4.93731 5.01142 5.07272 5.08021 5.16071 5.20889 5.27751 5.34468 5.44083 5.49853 5.54682 5.68486 5.80661 5.86111 6.07675 6.23235 6.33953 6.52640 6.85081 6.98174 7.50912 8.97553 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.009765 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.760864 B = 2866.811261 C = 3908.892092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.556 5.556 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.110 4.110 6 C 0.101 3.899 7 H 0.063 0.937 8 N -0.533 5.533 9 C 0.050 3.950 10 C -0.105 4.105 11 C -0.117 4.117 12 C -0.102 4.102 13 C 0.230 3.770 14 H -0.037 1.037 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.050 3.950 24 H 0.025 0.975 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.009 0.991 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.040 0.960 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 13.816 0.788 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.281 5.281 3 C -0.072 4.072 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.008 4.008 7 H 0.082 0.918 8 N -0.257 5.257 9 C -0.078 4.078 10 C -0.143 4.143 11 C -0.155 4.155 12 C -0.141 4.141 13 C 0.123 3.877 14 H -0.020 1.020 15 C -0.548 4.548 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.560 5.560 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.080 4.080 24 H 0.043 0.957 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.360 13.371 0.344 13.380 hybrid contribution -1.391 -0.852 0.084 1.633 sum -1.030 12.519 0.428 12.568 Atomic orbital electron populations 1.22343 0.86820 1.01775 1.01010 1.61853 1.08293 1.14715 1.43278 1.22198 0.96144 0.87969 1.00855 1.21569 0.94031 1.00885 0.98329 1.21713 1.00479 0.93484 0.99095 1.21524 0.90257 0.94281 0.94760 0.91833 1.62244 1.58524 1.02901 1.01983 1.22199 0.96852 0.98270 0.90458 1.21535 1.00341 0.94879 0.97526 1.21604 0.99354 0.96950 0.97574 1.21484 0.98507 1.00347 0.93773 1.18901 0.89965 0.84588 0.94204 1.01980 1.21405 1.35776 0.98671 0.98949 0.92877 1.25600 0.95152 0.98002 0.99663 1.70017 1.40017 1.12445 1.33472 0.85671 0.77639 0.78298 0.80740 1.20174 1.21113 1.19625 1.22474 0.98295 0.96536 0.90700 0.95654 0.89252 0.93063 0.89032 0.94937 0.92047 0.88572 0.91539 0.91206 0.97327 0.89375 0.89890 0.91550 0.94373 0.91818 0.92133 0.95031 0.93199 0.94099 0.96148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.59 127.69 1.22 2.04 16 2 N -0.56 -18.45 4.91 -922.61 -4.53 -22.98 16 3 C 0.06 1.42 5.46 86.33 0.47 1.89 16 4 C -0.11 -2.73 6.09 30.65 0.19 -2.54 16 5 C -0.11 -3.28 5.00 30.67 0.15 -3.13 16 6 C 0.10 4.00 2.08 44.97 0.09 4.09 16 7 H 0.06 2.97 6.13 -2.39 -0.01 2.96 16 8 N -0.53 -22.85 4.51 -850.14 -3.83 -26.68 16 9 C 0.05 1.78 4.68 86.32 0.40 2.19 16 10 C -0.11 -3.48 6.09 30.64 0.19 -3.29 16 11 C -0.12 -4.59 6.00 30.67 0.18 -4.41 16 12 C -0.10 -5.05 5.14 30.64 0.16 -4.89 16 13 C 0.23 11.82 1.26 44.19 0.06 11.87 16 14 H -0.04 -2.16 6.65 -2.39 -0.02 -2.17 16 15 C -0.51 -28.63 7.91 25.60 0.20 -28.42 16 16 H 0.05 3.03 6.26 -2.91 -0.02 3.01 16 17 C 0.01 0.80 5.31 84.65 0.45 1.25 16 18 N -0.92 -53.96 11.34 21.45 0.24 -53.72 16 19 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.05 1.96 4.06 86.33 0.35 2.31 16 24 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.83 6.09 -2.39 -0.01 1.81 16 32 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.01 0.32 6.69 -2.39 -0.02 0.31 16 34 H 0.09 2.67 5.85 -2.39 -0.01 2.65 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 3.36 6.11 -2.39 -0.01 3.34 16 40 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.04 1.98 6.56 -2.39 -0.02 1.96 16 43 H 0.02 0.78 6.59 -2.39 -0.02 0.77 16 Total: -1.00 -62.55 311.29 -1.01 -63.57 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.96 Total: 13.60 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 4.12 Total: -21.05 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -8.12 Total: -103.38 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -62.55 -1.01 -63.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.042 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds