Wall clock time and date at job start Mon Mar 30 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46841 * 110.99883 * 2 1 4 4 C 1.53039 * 109.52193 * 174.16073 * 3 2 1 5 5 C 1.53118 * 109.27747 * 59.18006 * 4 3 2 6 6 C 1.53113 * 109.16270 * 302.34441 * 5 4 3 7 7 H 1.08997 * 109.50441 * 297.67630 * 6 5 4 8 8 N 1.46900 * 109.50472 * 177.59353 * 6 5 4 9 9 C 1.46848 * 110.99440 * 305.45350 * 8 6 5 10 10 C 1.53033 * 109.51960 * 185.84944 * 9 8 6 11 11 C 1.53127 * 109.27631 * 300.81495 * 10 9 8 12 12 C 1.53116 * 109.15673 * 57.65086 * 11 10 9 13 13 C 1.46849 * 111.00136 * 69.65401 * 8 6 5 14 14 H 1.09001 * 109.46038 * 294.17200 * 13 8 6 15 15 C 1.50697 * 109.45793 * 54.14161 * 13 8 6 16 16 H 1.07999 * 120.00364 * 5.35942 * 15 13 8 17 17 C 1.37881 * 119.99841 * 185.07641 * 15 13 8 18 18 N 1.31517 * 119.99820 * 0.28132 * 17 15 13 19 19 Si 1.86798 * 119.99946 * 180.27848 * 17 15 13 20 20 H 1.48502 * 109.46999 * 60.00495 * 19 17 15 21 21 H 1.48505 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47386 * 300.00207 * 19 17 15 23 23 C 1.46846 * 110.99942 * 235.79210 * 2 1 3 24 24 H 1.09001 * 109.47415 * 56.04460 * 1 2 3 25 25 H 1.09000 * 109.47342 * 176.04250 * 1 2 3 26 26 H 1.08998 * 109.47404 * 296.04539 * 1 2 3 27 27 H 1.09007 * 109.46432 * 54.14844 * 3 2 1 28 28 H 1.08997 * 109.45854 * 294.17264 * 3 2 1 29 29 H 1.09005 * 109.50190 * 299.24274 * 4 3 2 30 30 H 1.09000 * 109.53600 * 179.14274 * 4 3 2 31 31 H 1.09005 * 109.52353 * 182.43899 * 5 4 3 32 32 H 1.09004 * 109.57167 * 62.28872 * 5 4 3 33 33 H 1.09007 * 109.47084 * 65.82929 * 9 8 6 34 34 H 1.09009 * 109.46275 * 305.85943 * 9 8 6 35 35 H 1.09003 * 109.50682 * 180.87498 * 10 9 8 36 36 H 1.08997 * 109.50010 * 60.75014 * 10 9 8 37 37 H 1.09000 * 109.51647 * 297.75039 * 11 10 9 38 38 H 1.08989 * 109.57421 * 177.58810 * 11 10 9 39 39 H 1.09007 * 109.50265 * 182.40374 * 12 11 10 40 40 H 1.08993 * 109.53979 * 62.31255 * 12 11 10 41 41 H 0.96998 * 119.99913 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.46160 * 65.82428 * 23 2 1 43 43 H 1.09007 * 109.46353 * 305.85650 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1187 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0209 7 1 3.7819 -1.3839 -0.0957 8 7 4.0460 -1.6245 -2.1664 9 6 3.8200 -0.8984 -3.4226 10 6 4.2487 -1.7730 -4.6030 11 6 5.7309 -2.1285 -4.4567 12 6 5.9472 -2.8405 -3.1186 13 6 5.4694 -1.9349 -1.9813 14 1 6.0464 -1.0102 -1.9864 15 6 5.6622 -2.6397 -0.6633 16 1 4.8045 -2.9144 -0.0672 17 6 6.9334 -2.9391 -0.2211 18 7 7.9778 -2.6045 -0.9470 19 14 7.1721 -3.8196 1.4089 20 1 6.4882 -5.1371 1.3646 21 1 8.6226 -4.0223 1.6543 22 1 6.5953 -2.9990 2.5040 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0709 26 1 -0.3634 0.4512 0.9233 27 1 1.5634 1.9257 0.8330 28 1 1.7324 1.8607 -0.9376 29 1 3.7813 0.8566 1.0906 30 1 3.9104 2.3510 0.1315 31 1 5.1997 0.4714 -0.8906 32 1 3.8896 1.0351 -1.9565 33 1 4.4050 0.0215 -3.4209 34 1 2.7615 -0.6553 -3.5163 35 1 4.0954 -1.2279 -5.5344 36 1 3.6546 -2.6868 -4.6133 37 1 6.3284 -1.2173 -4.4853 38 1 6.0308 -2.7865 -5.2721 39 1 7.0075 -3.0582 -2.9894 40 1 5.3805 -3.7714 -3.1051 41 1 8.8722 -2.8148 -0.6357 42 1 1.7324 -0.2707 -2.0661 43 1 1.5633 -1.7716 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259738709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:52 Heat of formation + Delta-G solvation = -1.075425 kcal Electronic energy + Delta-G solvation = -20407.016666 eV Core-core repulsion = 17679.355728 eV Total energy + Delta-G solvation = -2727.660938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.36934 -37.22894 -33.54558 -32.86077 -31.76923 -29.56300 -28.45253 -26.38926 -25.15668 -23.42670 -22.55715 -21.64613 -20.76514 -19.21683 -18.11126 -16.35313 -15.62022 -15.17938 -14.68550 -14.45419 -14.05858 -13.68128 -13.55169 -13.36625 -13.14537 -12.75524 -12.39964 -12.19581 -12.03388 -11.95898 -11.69711 -11.18278 -10.90465 -10.76672 -10.71827 -10.57951 -10.41696 -10.12542 -10.10394 -9.89689 -9.78573 -9.56731 -9.15001 -8.69286 -8.33992 -8.04733 -7.03994 -5.97790 -4.00400 3.36251 3.39999 3.43916 4.12680 4.46021 4.99299 5.23416 5.31425 5.34903 5.35679 5.44882 5.60582 5.63844 5.69423 5.74481 5.82117 5.92707 5.94076 5.97147 6.06527 6.11901 6.20033 6.30636 6.38891 6.43914 6.48413 6.58002 6.60583 6.80198 6.87249 6.89397 6.98561 7.21303 7.32768 7.33760 7.40010 7.61542 7.78143 7.89159 8.24271 8.37541 8.68275 9.07434 9.64191 11.09990 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.008886 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.572830 B = 3150.303080 C = 4179.710282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.542 5.542 3 C 0.059 3.941 4 C -0.112 4.112 5 C -0.150 4.150 6 C 0.098 3.902 7 H 0.106 0.894 8 N -0.528 5.528 9 C 0.053 3.947 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.102 4.102 13 C 0.222 3.778 14 H 0.005 0.995 15 C -0.503 4.503 16 H 0.063 0.937 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.065 3.935 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.260 0.740 42 H 0.025 0.975 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 6.141 -1.960 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.069 4.069 4 C -0.150 4.150 5 C -0.189 4.189 6 C -0.011 4.011 7 H 0.123 0.877 8 N -0.252 5.252 9 C -0.075 4.075 10 C -0.149 4.149 11 C -0.160 4.160 12 C -0.140 4.140 13 C 0.116 3.884 14 H 0.023 0.977 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.063 4.063 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.952 5.436 -1.569 11.448 hybrid contribution 0.391 0.746 0.073 0.845 sum -9.561 6.182 -1.496 11.484 Atomic orbital electron populations 1.22310 0.87920 1.01663 1.00086 1.61810 1.06845 1.13548 1.44486 1.22069 0.96230 0.89109 0.99452 1.21515 0.93676 0.99624 1.00231 1.22223 1.01838 0.97712 0.97100 1.21569 0.90965 0.91537 0.97018 0.87655 1.62124 1.21453 1.42149 0.99507 1.22042 0.98738 0.95085 0.91681 1.21539 0.97539 0.99638 0.96165 1.21676 0.94969 0.99911 0.99439 1.21601 1.02799 0.98091 0.91553 1.19166 0.80911 0.94210 0.94158 0.97732 1.21123 0.92063 1.37400 1.03539 0.91886 1.24913 0.96028 0.95927 0.97166 1.69915 0.98165 1.47429 1.37756 0.86652 0.76755 0.80353 0.84222 1.20257 1.21506 1.20271 1.22202 0.96666 0.97566 0.89862 0.96273 0.91497 0.91794 0.91453 0.95635 0.90965 0.92345 0.90840 0.93270 0.95943 0.92717 0.93496 0.91962 0.93440 0.93836 0.89829 0.93798 0.93022 0.95690 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.62 60.06 0.58 0.93 16 2 N -0.54 -8.26 4.91 -242.96 -1.19 -9.45 16 3 C 0.06 0.84 5.46 -3.84 -0.02 0.81 16 4 C -0.11 -1.74 6.09 -26.65 -0.16 -1.90 16 5 C -0.15 -2.74 4.57 -26.61 -0.12 -2.86 16 6 C 0.10 1.93 2.12 -67.63 -0.14 1.79 16 7 H 0.11 2.39 5.92 -51.93 -0.31 2.08 16 8 N -0.53 -11.18 4.44 -220.05 -0.98 -12.16 16 9 C 0.05 0.98 4.55 -3.84 -0.02 0.97 16 10 C -0.11 -1.95 6.09 -26.65 -0.16 -2.12 16 11 C -0.12 -2.41 6.00 -26.61 -0.16 -2.57 16 12 C -0.10 -2.41 5.19 -26.66 -0.14 -2.55 16 13 C 0.22 5.44 1.40 -68.88 -0.10 5.34 16 14 H 0.01 0.14 6.92 -51.93 -0.36 -0.22 16 15 C -0.50 -13.50 7.60 -34.44 -0.26 -13.76 16 16 H 0.06 1.71 6.54 -52.49 -0.34 1.37 16 17 C 0.06 1.66 5.32 -17.82 -0.09 1.57 16 18 N -0.89 -25.25 11.72 55.43 0.65 -24.60 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.06 1.09 4.68 -3.83 -0.02 1.07 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.56 6.92 -51.93 -0.36 1.20 16 32 H 0.05 0.87 6.33 -51.93 -0.33 0.54 16 33 H 0.02 0.43 6.53 -51.93 -0.34 0.09 16 34 H 0.05 0.93 6.18 -51.92 -0.32 0.61 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.78 8.14 -51.94 -0.42 0.36 16 39 H 0.08 2.19 6.51 -51.93 -0.34 1.86 16 40 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.41 6.37 -51.93 -0.33 0.08 16 43 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -27.40 312.77 -10.29 -37.69 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.65 Total: 0.75 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.82 Total: -13.28 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -1.52 Total: -46.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.40 -10.29 -37.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.615 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds