Wall clock time and date at job start Mon Mar 30 2020 04:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46841 * 110.99883 * 2 1 4 4 C 1.53039 * 109.52193 * 174.16073 * 3 2 1 5 5 C 1.53118 * 109.27747 * 59.18006 * 4 3 2 6 6 C 1.53113 * 109.16270 * 302.34441 * 5 4 3 7 7 H 1.08997 * 109.50441 * 297.67630 * 6 5 4 8 8 N 1.46900 * 109.50472 * 177.59353 * 6 5 4 9 9 C 1.46848 * 110.99440 * 305.45350 * 8 6 5 10 10 C 1.53033 * 109.51960 * 185.84944 * 9 8 6 11 11 C 1.53127 * 109.27631 * 300.81495 * 10 9 8 12 12 C 1.53116 * 109.15673 * 57.65086 * 11 10 9 13 13 C 1.46849 * 111.00136 * 69.65401 * 8 6 5 14 14 H 1.09001 * 109.46038 * 294.17200 * 13 8 6 15 15 C 1.50697 * 109.45793 * 54.14161 * 13 8 6 16 16 H 1.07999 * 120.00364 * 5.35942 * 15 13 8 17 17 C 1.37881 * 119.99841 * 185.07641 * 15 13 8 18 18 N 1.31517 * 119.99820 * 0.28132 * 17 15 13 19 19 Si 1.86798 * 119.99946 * 180.27848 * 17 15 13 20 20 H 1.48502 * 109.46999 * 60.00495 * 19 17 15 21 21 H 1.48505 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47386 * 300.00207 * 19 17 15 23 23 C 1.46846 * 110.99942 * 235.79210 * 2 1 3 24 24 H 1.09001 * 109.47415 * 56.04460 * 1 2 3 25 25 H 1.09000 * 109.47342 * 176.04250 * 1 2 3 26 26 H 1.08998 * 109.47404 * 296.04539 * 1 2 3 27 27 H 1.09007 * 109.46432 * 54.14844 * 3 2 1 28 28 H 1.08997 * 109.45854 * 294.17264 * 3 2 1 29 29 H 1.09005 * 109.50190 * 299.24274 * 4 3 2 30 30 H 1.09000 * 109.53600 * 179.14274 * 4 3 2 31 31 H 1.09005 * 109.52353 * 182.43899 * 5 4 3 32 32 H 1.09004 * 109.57167 * 62.28872 * 5 4 3 33 33 H 1.09007 * 109.47084 * 65.82929 * 9 8 6 34 34 H 1.09009 * 109.46275 * 305.85943 * 9 8 6 35 35 H 1.09003 * 109.50682 * 180.87498 * 10 9 8 36 36 H 1.08997 * 109.50010 * 60.75014 * 10 9 8 37 37 H 1.09000 * 109.51647 * 297.75039 * 11 10 9 38 38 H 1.08989 * 109.57421 * 177.58810 * 11 10 9 39 39 H 1.09007 * 109.50265 * 182.40374 * 12 11 10 40 40 H 1.08993 * 109.53979 * 62.31255 * 12 11 10 41 41 H 0.96998 * 119.99913 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.46160 * 65.82428 * 23 2 1 43 43 H 1.09007 * 109.46353 * 305.85650 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1187 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0209 7 1 3.7819 -1.3839 -0.0957 8 7 4.0460 -1.6245 -2.1664 9 6 3.8200 -0.8984 -3.4226 10 6 4.2487 -1.7730 -4.6030 11 6 5.7309 -2.1285 -4.4567 12 6 5.9472 -2.8405 -3.1186 13 6 5.4694 -1.9349 -1.9813 14 1 6.0464 -1.0102 -1.9864 15 6 5.6622 -2.6397 -0.6633 16 1 4.8045 -2.9144 -0.0672 17 6 6.9334 -2.9391 -0.2211 18 7 7.9778 -2.6045 -0.9470 19 14 7.1721 -3.8196 1.4089 20 1 6.4882 -5.1371 1.3646 21 1 8.6226 -4.0223 1.6543 22 1 6.5953 -2.9990 2.5040 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0709 26 1 -0.3634 0.4512 0.9233 27 1 1.5634 1.9257 0.8330 28 1 1.7324 1.8607 -0.9376 29 1 3.7813 0.8566 1.0906 30 1 3.9104 2.3510 0.1315 31 1 5.1997 0.4714 -0.8906 32 1 3.8896 1.0351 -1.9565 33 1 4.4050 0.0215 -3.4209 34 1 2.7615 -0.6553 -3.5163 35 1 4.0954 -1.2279 -5.5344 36 1 3.6546 -2.6868 -4.6133 37 1 6.3284 -1.2173 -4.4853 38 1 6.0308 -2.7865 -5.2721 39 1 7.0075 -3.0582 -2.9894 40 1 5.3805 -3.7714 -3.1051 41 1 8.8722 -2.8148 -0.6357 42 1 1.7324 -0.2707 -2.0661 43 1 1.5633 -1.7716 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259738709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:51 Heat of formation + Delta-G solvation = -18.735623 kcal Electronic energy + Delta-G solvation = -20407.782470 eV Core-core repulsion = 17679.355728 eV Total energy + Delta-G solvation = -2728.426742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86989 -38.68295 -35.01821 -34.85225 -33.14066 -31.41055 -29.91340 -27.53048 -27.13762 -25.00326 -23.86047 -23.25821 -22.30274 -20.78048 -19.72521 -18.31146 -17.20924 -16.74604 -16.07448 -15.96724 -15.46446 -15.15762 -15.08401 -14.95345 -14.74466 -14.20794 -14.11364 -13.65097 -13.46301 -13.25736 -13.12311 -12.82285 -12.63037 -12.40896 -12.34587 -12.15376 -11.91717 -11.85003 -11.68227 -11.55126 -11.37049 -11.28076 -10.82199 -10.63968 -10.38085 -9.19967 -8.76542 -8.09422 -6.18151 1.41090 1.42226 1.49703 2.43216 2.92268 3.20118 3.52322 3.94024 3.97739 4.05587 4.17494 4.21226 4.27370 4.38146 4.46446 4.55797 4.62297 4.66306 4.70203 4.74348 4.78217 4.85831 4.88753 4.96156 5.04596 5.06533 5.09012 5.13853 5.19122 5.27084 5.31149 5.42469 5.49560 5.51196 5.67864 5.78706 5.85793 6.14303 6.24165 6.31785 6.50072 6.85970 6.98678 7.49988 8.97249 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.008886 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.572830 B = 3150.303080 C = 4179.710282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.561 5.561 3 C 0.064 3.936 4 C -0.109 4.109 5 C -0.141 4.141 6 C 0.098 3.902 7 H 0.066 0.934 8 N -0.535 5.535 9 C 0.052 3.948 10 C -0.105 4.105 11 C -0.117 4.117 12 C -0.098 4.098 13 C 0.232 3.768 14 H -0.034 1.034 15 C -0.513 4.513 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.080 3.920 24 H 0.031 0.969 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.036 0.964 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.369 6.986 -2.415 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.180 4.180 6 C -0.011 4.011 7 H 0.084 0.916 8 N -0.259 5.259 9 C -0.076 4.076 10 C -0.143 4.143 11 C -0.154 4.154 12 C -0.136 4.136 13 C 0.125 3.875 14 H -0.016 1.016 15 C -0.552 4.552 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.560 5.560 19 Si 0.776 3.224 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.049 4.049 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.278 6.288 -2.023 13.942 hybrid contribution 1.099 0.505 0.231 1.231 sum -11.179 6.793 -1.792 13.203 Atomic orbital electron populations 1.22368 0.85613 1.02325 1.01498 1.61777 1.08962 1.14151 1.43737 1.22069 0.94476 0.88816 1.01009 1.21501 0.95405 0.99932 0.97892 1.22083 0.99250 0.97736 0.98937 1.21482 0.93392 0.91405 0.94794 0.91619 1.62084 1.18845 1.43628 1.01334 1.22158 1.00129 0.94689 0.90610 1.21532 0.95405 1.00078 0.97244 1.21598 0.96941 0.99421 0.97482 1.21430 1.00378 0.97940 0.93899 1.18872 0.82699 0.92319 0.93648 1.01611 1.21379 0.91851 1.37267 1.04667 0.92881 1.25625 0.95858 0.96750 1.00228 1.70042 0.98359 1.48463 1.39158 0.85733 0.76771 0.79329 0.80564 1.19750 1.21004 1.19930 1.21942 0.93880 0.97911 0.91123 0.95037 0.91287 0.90124 0.89052 0.94540 0.92693 0.90316 0.95019 0.92245 0.96689 0.90169 0.89859 0.91607 0.94244 0.91727 0.93129 0.94754 0.93139 0.94589 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.62 127.69 1.23 1.85 16 2 N -0.56 -15.83 4.91 -922.58 -4.53 -20.36 16 3 C 0.06 1.62 5.46 86.33 0.47 2.09 16 4 C -0.11 -3.29 6.09 30.65 0.19 -3.11 16 5 C -0.14 -5.24 4.57 30.67 0.14 -5.10 16 6 C 0.10 3.92 2.12 44.97 0.10 4.01 16 7 H 0.07 3.13 5.92 -2.39 -0.01 3.11 16 8 N -0.54 -22.90 4.44 -850.10 -3.77 -26.68 16 9 C 0.05 1.85 4.55 86.32 0.39 2.25 16 10 C -0.10 -3.44 6.09 30.65 0.19 -3.26 16 11 C -0.12 -4.53 6.00 30.68 0.18 -4.34 16 12 C -0.10 -4.77 5.19 30.64 0.16 -4.61 16 13 C 0.23 11.87 1.40 44.19 0.06 11.93 16 14 H -0.03 -1.95 6.92 -2.39 -0.02 -1.97 16 15 C -0.51 -28.80 7.60 25.60 0.19 -28.60 16 16 H 0.05 3.02 6.54 -2.91 -0.02 3.00 16 17 C 0.01 0.79 5.32 84.66 0.45 1.24 16 18 N -0.92 -54.16 11.72 21.45 0.25 -53.91 16 19 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 23 C 0.08 2.55 4.68 86.33 0.40 2.96 16 24 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.92 8.12 -2.38 -0.02 1.90 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.41 6.92 -2.38 -0.02 1.40 16 32 H 0.06 2.06 6.33 -2.39 -0.02 2.04 16 33 H 0.01 0.56 6.53 -2.38 -0.02 0.54 16 34 H 0.08 2.46 6.18 -2.38 -0.01 2.45 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 2.77 6.51 -2.38 -0.02 2.76 16 40 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.04 1.08 6.37 -2.38 -0.02 1.06 16 43 H 0.07 2.34 8.04 -2.38 -0.02 2.32 16 Total: -1.00 -61.85 312.77 -0.91 -62.77 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.96 Total: 13.86 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 4.16 Total: -22.71 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -8.05 Total: -100.95 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -61.85 -0.91 -62.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.031 kcal (2) G-P(sol) polarization free energy of solvation -61.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds