Wall clock time and date at job start Mon Mar 30 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46845 * 110.99669 * 2 1 4 4 C 1.53034 * 109.52571 * 185.83859 * 3 2 1 5 5 C 1.53125 * 109.31179 * 300.84186 * 4 3 2 6 6 C 1.53122 * 109.15438 * 57.59256 * 5 4 3 7 7 H 1.08996 * 109.50317 * 62.36866 * 6 5 4 8 8 N 1.46904 * 109.49924 * 182.44318 * 6 5 4 9 9 C 1.46846 * 110.99942 * 65.96947 * 8 6 5 10 10 C 1.53035 * 109.52744 * 174.16069 * 9 8 6 11 11 C 1.53123 * 109.27774 * 59.17321 * 10 9 8 12 12 C 1.53114 * 109.16198 * 302.35270 * 11 10 9 13 13 C 1.46844 * 111.00328 * 301.75793 * 8 6 5 14 14 H 1.08998 * 109.46026 * 65.82128 * 13 8 6 15 15 C 1.50696 * 109.46250 * 305.85722 * 13 8 6 16 16 H 1.08006 * 119.99875 * 359.97438 * 15 13 8 17 17 C 1.37880 * 120.00428 * 179.97438 * 15 13 8 18 18 N 1.31514 * 119.99657 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00124 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46934 * 90.00561 * 19 17 15 21 21 H 1.48500 * 109.46771 * 209.99976 * 19 17 15 22 22 H 1.48492 * 109.47138 * 330.00197 * 19 17 15 23 23 C 1.46847 * 111.00258 * 124.20671 * 2 1 3 24 24 H 1.08999 * 109.47374 * 295.78697 * 1 2 3 25 25 H 1.08997 * 109.47812 * 55.79280 * 1 2 3 26 26 H 1.09003 * 109.46814 * 175.79115 * 1 2 3 27 27 H 1.09004 * 109.46664 * 305.85920 * 3 2 1 28 28 H 1.09008 * 109.46565 * 65.83420 * 3 2 1 29 29 H 1.09001 * 109.50319 * 60.76577 * 4 3 2 30 30 H 1.09001 * 109.50721 * 180.83875 * 4 3 2 31 31 H 1.08999 * 109.49025 * 297.70984 * 5 4 3 32 32 H 1.09001 * 109.55470 * 177.51623 * 5 4 3 33 33 H 1.09008 * 109.46456 * 294.17536 * 9 8 6 34 34 H 1.09003 * 109.46474 * 54.14041 * 9 8 6 35 35 H 1.08995 * 109.50534 * 179.12351 * 10 9 8 36 36 H 1.09011 * 109.49854 * 299.24031 * 10 9 8 37 37 H 1.09000 * 109.52219 * 182.44440 * 11 10 9 38 38 H 1.09001 * 109.57074 * 62.29217 * 11 10 9 39 39 H 1.09000 * 109.50493 * 297.71120 * 12 11 10 40 40 H 1.09000 * 109.53426 * 177.61523 * 12 11 10 41 41 H 0.96993 * 119.99904 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.45822 * 54.14576 * 23 2 1 43 43 H 1.08999 * 109.46482 * 294.17884 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5180 1.3343 -0.1467 5 6 4.1195 0.5369 1.0138 6 6 3.5181 -0.8713 1.0208 7 1 3.7814 -1.3840 0.0957 8 7 4.0462 -1.6244 2.1663 9 6 3.5897 -1.0419 3.4346 10 6 4.0362 -1.9322 4.5964 11 6 5.5630 -2.0482 4.5867 12 6 6.0156 -2.6120 3.2370 13 6 5.5117 -1.7019 2.1146 14 1 5.9328 -0.7043 2.2393 15 6 5.9382 -2.2638 0.7829 16 1 5.1944 -2.5364 0.0487 17 6 7.2777 -2.4300 0.5018 18 7 8.1833 -2.0976 1.3957 19 14 7.8062 -3.1271 -1.1487 20 1 7.9955 -2.0173 -2.1171 21 1 9.0839 -3.8665 -0.9874 22 1 6.7596 -4.0515 -1.6536 23 6 1.9953 -0.7707 1.1338 24 1 -0.3634 0.4470 0.9253 25 1 -0.3634 0.5777 -0.8498 26 1 -0.3633 -1.0249 -0.0754 27 1 1.5632 1.9258 -0.8329 28 1 1.7325 1.8608 0.9377 29 1 3.7813 0.8570 -1.0906 30 1 3.9096 2.3515 -0.1317 31 1 3.8900 1.0357 1.9554 32 1 5.2004 0.4708 0.8895 33 1 4.0198 -0.0473 3.5532 34 1 2.5021 -0.9688 3.4301 35 1 3.7106 -1.4915 5.5387 36 1 3.5953 -2.9230 4.4859 37 1 5.8826 -2.7165 5.3863 38 1 6.0050 -1.0632 4.7367 39 1 5.6059 -3.6134 3.1051 40 1 7.1042 -2.6575 3.2076 41 1 9.1257 -2.2148 1.1980 42 1 1.5634 -1.7715 1.1242 43 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259738713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:54 Heat of formation + Delta-G solvation = 1.498555 kcal Electronic energy + Delta-G solvation = -20439.946155 eV Core-core repulsion = 17712.396833 eV Total energy + Delta-G solvation = -2727.549322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41270 -37.21272 -33.54233 -32.89205 -31.78371 -29.55318 -28.39892 -26.39124 -25.17617 -23.45187 -22.62976 -21.50093 -20.76073 -19.29773 -18.07484 -16.36114 -15.63134 -15.16096 -14.69612 -14.49547 -14.04145 -13.67231 -13.49263 -13.39591 -13.15630 -12.75502 -12.41276 -12.19586 -12.01774 -11.96536 -11.71883 -11.16149 -10.93111 -10.71934 -10.70661 -10.54361 -10.41044 -10.15870 -10.12970 -9.91777 -9.75331 -9.48383 -9.16651 -8.65421 -8.34155 -8.05572 -7.02575 -5.96981 -4.00679 3.33643 3.40445 3.45273 4.11352 4.45546 4.99292 5.23527 5.30502 5.34111 5.36170 5.43757 5.59959 5.64216 5.70005 5.75662 5.80761 5.90348 5.92161 5.97463 6.07782 6.12785 6.19404 6.30867 6.40432 6.44799 6.50348 6.58688 6.61654 6.82180 6.89691 6.92519 7.00722 7.22885 7.31382 7.34276 7.38087 7.64506 7.80394 7.89540 8.27993 8.39799 8.68108 9.06699 9.64182 11.09344 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.008832 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.581283 B = 3169.548064 C = 4212.462071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.542 5.542 3 C 0.059 3.941 4 C -0.112 4.112 5 C -0.150 4.150 6 C 0.103 3.897 7 H 0.099 0.901 8 N -0.528 5.528 9 C 0.051 3.949 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.221 3.779 14 H 0.003 0.997 15 C -0.500 4.500 16 H 0.063 0.937 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.060 3.940 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 5.038 1.212 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.069 4.069 4 C -0.151 4.151 5 C -0.189 4.189 6 C -0.006 4.006 7 H 0.117 0.883 8 N -0.252 5.252 9 C -0.077 4.077 10 C -0.149 4.149 11 C -0.160 4.160 12 C -0.144 4.144 13 C 0.115 3.885 14 H 0.020 0.980 15 C -0.539 4.539 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.067 4.067 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.588 4.311 0.791 11.460 hybrid contribution 0.403 0.920 0.025 1.004 sum -10.185 5.231 0.817 11.479 Atomic orbital electron populations 1.22310 0.87922 1.01979 0.99782 1.61809 1.06840 1.13612 1.44419 1.22085 0.96364 0.89029 0.99447 1.21520 0.93525 0.99713 1.00298 1.22217 1.02525 0.97292 0.96831 1.21508 0.90636 0.91707 0.96765 0.88302 1.62213 1.14184 1.49469 0.99315 1.22071 0.98486 0.95587 0.91585 1.21542 0.97167 0.99989 0.96184 1.21680 0.94587 1.00075 0.99646 1.21655 1.03249 0.98358 0.91185 1.19189 0.80029 0.94458 0.94786 0.97969 1.21185 0.91513 1.41658 0.99534 0.91872 1.24906 0.96682 0.95649 0.96847 1.69886 1.00791 1.48717 1.33915 0.86583 0.77986 0.79171 0.84228 1.20847 1.21397 1.19826 1.22296 0.96736 0.97665 0.90047 0.96260 0.91811 0.91477 0.91454 0.95650 0.91014 0.92331 0.93629 0.89953 0.96210 0.92457 0.93543 0.91943 0.93869 0.93532 0.93925 0.88894 0.93087 0.90562 0.95363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.06 0.58 0.92 16 2 N -0.54 -8.17 4.91 -242.96 -1.19 -9.37 16 3 C 0.06 0.83 5.46 -3.84 -0.02 0.81 16 4 C -0.11 -1.76 6.09 -26.65 -0.16 -1.93 16 5 C -0.15 -2.80 4.56 -26.60 -0.12 -2.92 16 6 C 0.10 2.01 2.07 -67.63 -0.14 1.87 16 7 H 0.10 2.21 6.20 -51.93 -0.32 1.89 16 8 N -0.53 -11.19 4.52 -220.05 -1.00 -12.19 16 9 C 0.05 0.95 4.68 -3.84 -0.02 0.93 16 10 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16 11 C -0.12 -2.43 6.00 -26.61 -0.16 -2.59 16 12 C -0.11 -2.53 5.14 -26.66 -0.14 -2.67 16 13 C 0.22 5.42 1.24 -68.88 -0.09 5.34 16 14 H 0.00 0.08 6.67 -51.93 -0.35 -0.27 16 15 C -0.50 -13.39 7.82 -34.44 -0.27 -13.66 16 16 H 0.06 1.71 6.27 -52.48 -0.33 1.39 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.11 11.33 55.43 0.63 -24.48 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.06 1.00 4.36 -3.84 -0.02 0.98 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.83 6.58 -51.93 -0.34 0.49 16 32 H 0.08 1.80 6.56 -51.93 -0.34 1.46 16 33 H 0.02 0.38 6.71 -51.92 -0.35 0.03 16 34 H 0.06 0.97 5.85 -51.93 -0.30 0.66 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 2.46 6.09 -51.93 -0.32 2.14 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 43 H 0.03 0.46 6.15 -51.93 -0.32 0.14 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -27.30 311.12 -10.30 -37.60 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.59 Total: 0.94 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.81 Total: -13.49 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -1.56 Total: -46.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.30 -10.30 -37.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.099 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds