Wall clock time and date at job start Mon Mar 30 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46845 * 110.99669 * 2 1 4 4 C 1.53034 * 109.52571 * 185.83859 * 3 2 1 5 5 C 1.53125 * 109.31179 * 300.84186 * 4 3 2 6 6 C 1.53122 * 109.15438 * 57.59256 * 5 4 3 7 7 H 1.08996 * 109.50317 * 62.36866 * 6 5 4 8 8 N 1.46904 * 109.49924 * 182.44318 * 6 5 4 9 9 C 1.46846 * 110.99942 * 65.96947 * 8 6 5 10 10 C 1.53035 * 109.52744 * 174.16069 * 9 8 6 11 11 C 1.53123 * 109.27774 * 59.17321 * 10 9 8 12 12 C 1.53114 * 109.16198 * 302.35270 * 11 10 9 13 13 C 1.46844 * 111.00328 * 301.75793 * 8 6 5 14 14 H 1.08998 * 109.46026 * 65.82128 * 13 8 6 15 15 C 1.50696 * 109.46250 * 305.85722 * 13 8 6 16 16 H 1.08006 * 119.99875 * 359.97438 * 15 13 8 17 17 C 1.37880 * 120.00428 * 179.97438 * 15 13 8 18 18 N 1.31514 * 119.99657 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00124 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46934 * 90.00561 * 19 17 15 21 21 H 1.48500 * 109.46771 * 209.99976 * 19 17 15 22 22 H 1.48492 * 109.47138 * 330.00197 * 19 17 15 23 23 C 1.46847 * 111.00258 * 124.20671 * 2 1 3 24 24 H 1.08999 * 109.47374 * 295.78697 * 1 2 3 25 25 H 1.08997 * 109.47812 * 55.79280 * 1 2 3 26 26 H 1.09003 * 109.46814 * 175.79115 * 1 2 3 27 27 H 1.09004 * 109.46664 * 305.85920 * 3 2 1 28 28 H 1.09008 * 109.46565 * 65.83420 * 3 2 1 29 29 H 1.09001 * 109.50319 * 60.76577 * 4 3 2 30 30 H 1.09001 * 109.50721 * 180.83875 * 4 3 2 31 31 H 1.08999 * 109.49025 * 297.70984 * 5 4 3 32 32 H 1.09001 * 109.55470 * 177.51623 * 5 4 3 33 33 H 1.09008 * 109.46456 * 294.17536 * 9 8 6 34 34 H 1.09003 * 109.46474 * 54.14041 * 9 8 6 35 35 H 1.08995 * 109.50534 * 179.12351 * 10 9 8 36 36 H 1.09011 * 109.49854 * 299.24031 * 10 9 8 37 37 H 1.09000 * 109.52219 * 182.44440 * 11 10 9 38 38 H 1.09001 * 109.57074 * 62.29217 * 11 10 9 39 39 H 1.09000 * 109.50493 * 297.71120 * 12 11 10 40 40 H 1.09000 * 109.53426 * 177.61523 * 12 11 10 41 41 H 0.96993 * 119.99904 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.45822 * 54.14576 * 23 2 1 43 43 H 1.08999 * 109.46482 * 294.17884 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5180 1.3343 -0.1467 5 6 4.1195 0.5369 1.0138 6 6 3.5181 -0.8713 1.0208 7 1 3.7814 -1.3840 0.0957 8 7 4.0462 -1.6244 2.1663 9 6 3.5897 -1.0419 3.4346 10 6 4.0362 -1.9322 4.5964 11 6 5.5630 -2.0482 4.5867 12 6 6.0156 -2.6120 3.2370 13 6 5.5117 -1.7019 2.1146 14 1 5.9328 -0.7043 2.2393 15 6 5.9382 -2.2638 0.7829 16 1 5.1944 -2.5364 0.0487 17 6 7.2777 -2.4300 0.5018 18 7 8.1833 -2.0976 1.3957 19 14 7.8062 -3.1271 -1.1487 20 1 7.9955 -2.0173 -2.1171 21 1 9.0839 -3.8665 -0.9874 22 1 6.7596 -4.0515 -1.6536 23 6 1.9953 -0.7707 1.1338 24 1 -0.3634 0.4470 0.9253 25 1 -0.3634 0.5777 -0.8498 26 1 -0.3633 -1.0249 -0.0754 27 1 1.5632 1.9258 -0.8329 28 1 1.7325 1.8608 0.9377 29 1 3.7813 0.8570 -1.0906 30 1 3.9096 2.3515 -0.1317 31 1 3.8900 1.0357 1.9554 32 1 5.2004 0.4708 0.8895 33 1 4.0198 -0.0473 3.5532 34 1 2.5021 -0.9688 3.4301 35 1 3.7106 -1.4915 5.5387 36 1 3.5953 -2.9230 4.4859 37 1 5.8826 -2.7165 5.3863 38 1 6.0050 -1.0632 4.7367 39 1 5.6059 -3.6134 3.1051 40 1 7.1042 -2.6575 3.2076 41 1 9.1257 -2.2148 1.1980 42 1 1.5634 -1.7715 1.1242 43 1 1.7325 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259738713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:54 Heat of formation + Delta-G solvation = -16.146532 kcal Electronic energy + Delta-G solvation = -20440.711304 eV Core-core repulsion = 17712.396833 eV Total energy + Delta-G solvation = -2728.314470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91560 -38.66494 -35.00801 -34.88489 -33.16219 -31.39403 -29.86347 -27.53395 -27.15206 -25.02909 -23.97729 -23.07125 -22.30276 -20.86470 -19.70184 -18.29217 -17.22806 -16.71262 -16.09965 -15.98664 -15.50504 -15.10614 -15.07872 -14.97232 -14.73790 -14.19482 -14.12684 -13.67418 -13.38845 -13.30588 -13.12935 -12.84471 -12.59299 -12.41695 -12.30727 -12.14125 -11.90983 -11.87250 -11.68694 -11.60688 -11.33231 -11.22376 -10.84604 -10.59500 -10.37241 -9.20199 -8.75649 -8.07561 -6.17551 1.40001 1.41377 1.51759 2.43312 2.91924 3.20317 3.52112 3.93717 3.97667 4.05204 4.18187 4.21078 4.26519 4.37484 4.45978 4.55463 4.62236 4.65522 4.69559 4.74936 4.78003 4.85967 4.89242 4.95987 5.04647 5.06065 5.10800 5.14275 5.18863 5.27665 5.30722 5.45169 5.49567 5.53699 5.69317 5.81612 5.87386 6.13053 6.23085 6.35132 6.51554 6.86099 6.98459 7.50788 8.97506 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.008832 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.581283 B = 3169.548064 C = 4212.462071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.560 5.560 3 C 0.064 3.936 4 C -0.109 4.109 5 C -0.140 4.140 6 C 0.104 3.896 7 H 0.063 0.937 8 N -0.536 5.536 9 C 0.051 3.949 10 C -0.105 4.105 11 C -0.117 4.117 12 C -0.102 4.102 13 C 0.232 3.768 14 H -0.033 1.033 15 C -0.511 4.511 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.950 3.050 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.075 3.925 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 5.666 1.453 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.285 5.285 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.179 4.179 6 C -0.005 4.005 7 H 0.081 0.919 8 N -0.260 5.260 9 C -0.077 4.077 10 C -0.143 4.143 11 C -0.155 4.155 12 C -0.141 4.141 13 C 0.125 3.875 14 H -0.015 1.015 15 C -0.550 4.550 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.559 5.559 19 Si 0.776 3.224 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.053 4.053 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.966 4.945 1.029 13.915 hybrid contribution 1.130 0.742 -0.066 1.354 sum -11.836 5.687 0.964 13.166 Atomic orbital electron populations 1.22374 0.85557 1.02793 1.01107 1.61776 1.08986 1.14057 1.43653 1.22076 0.94509 0.88876 1.00942 1.21502 0.95354 0.99876 0.98005 1.22051 0.99814 0.97609 0.98454 1.21423 0.93156 0.91315 0.94654 0.91920 1.62141 1.11841 1.50750 1.01267 1.22186 0.99873 0.95219 0.90453 1.21536 0.95019 1.00293 0.97438 1.21600 0.96568 0.99736 0.97547 1.21486 1.01165 0.97778 0.93683 1.18891 0.82218 0.92368 0.94043 1.01532 1.21423 0.91555 1.41425 1.00547 0.92944 1.25607 0.96810 0.96116 0.99900 1.70015 1.00879 1.49627 1.35398 0.85677 0.77589 0.78548 0.80578 1.20413 1.20898 1.19552 1.22048 0.93861 0.98178 0.91248 0.95215 0.90010 0.91120 0.88955 0.94760 0.92459 0.90566 0.93148 0.94402 0.96953 0.89844 0.89900 0.91673 0.91878 0.94239 0.95147 0.92096 0.93156 0.90781 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.59 127.69 1.22 1.83 16 2 N -0.56 -15.55 4.91 -922.60 -4.53 -20.08 16 3 C 0.06 1.62 5.46 86.32 0.47 2.09 16 4 C -0.11 -3.35 6.09 30.65 0.19 -3.16 16 5 C -0.14 -5.35 4.56 30.68 0.14 -5.21 16 6 C 0.10 4.11 2.07 44.97 0.09 4.20 16 7 H 0.06 2.92 6.20 -2.39 -0.01 2.91 16 8 N -0.54 -22.99 4.52 -850.10 -3.85 -26.84 16 9 C 0.05 1.81 4.68 86.33 0.40 2.21 16 10 C -0.11 -3.48 6.09 30.65 0.19 -3.30 16 11 C -0.12 -4.57 6.00 30.67 0.18 -4.39 16 12 C -0.10 -5.04 5.14 30.64 0.16 -4.88 16 13 C 0.23 11.84 1.24 44.19 0.05 11.89 16 14 H -0.03 -1.88 6.67 -2.39 -0.02 -1.89 16 15 C -0.51 -28.58 7.82 25.60 0.20 -28.38 16 16 H 0.05 2.98 6.27 -2.91 -0.02 2.97 16 17 C 0.01 0.79 5.30 84.66 0.45 1.24 16 18 N -0.92 -53.69 11.33 21.45 0.24 -53.44 16 19 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 C 0.07 2.36 4.36 86.32 0.38 2.73 16 24 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.93 8.09 -2.38 -0.02 1.91 16 28 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.84 6.58 -2.39 -0.02 1.83 16 32 H 0.04 1.75 6.56 -2.39 -0.02 1.74 16 33 H 0.01 0.46 6.71 -2.38 -0.02 0.45 16 34 H 0.08 2.56 5.85 -2.39 -0.01 2.54 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 3.37 6.09 -2.39 -0.01 3.36 16 41 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 43 H 0.04 1.13 6.15 -2.39 -0.01 1.11 16 Total: -1.00 -61.48 311.12 -1.02 -62.50 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.96 Total: 14.06 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.13 Total: -23.13 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -8.13 Total: -100.37 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -61.48 -1.02 -62.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.351 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds