Wall clock time and date at job start Mon Mar 30 2020 04:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46845 * 111.00099 * 2 1 4 4 C 1.53037 * 109.52174 * 174.15774 * 3 2 1 5 5 C 1.53117 * 109.27576 * 59.18464 * 4 3 2 6 6 C 1.53118 * 109.16384 * 302.34271 * 5 4 3 7 7 H 1.09002 * 109.49874 * 297.67837 * 6 5 4 8 8 N 1.46895 * 109.50889 * 177.59870 * 6 5 4 9 9 C 1.46850 * 110.99770 * 299.20784 * 8 6 5 10 10 C 1.53037 * 109.52521 * 174.16042 * 9 8 6 11 11 C 1.53118 * 109.27527 * 59.17793 * 10 9 8 12 12 C 1.53121 * 109.16351 * 302.34548 * 11 10 9 13 13 C 1.46848 * 111.00361 * 175.00123 * 8 6 5 14 14 H 1.09001 * 109.45289 * 65.82505 * 13 8 6 15 15 C 1.50698 * 109.45872 * 305.85541 * 13 8 6 16 16 H 1.08009 * 120.00210 * 325.74651 * 15 13 8 17 17 C 1.37873 * 120.00152 * 145.75412 * 15 13 8 18 18 N 1.31515 * 120.00212 * 177.56374 * 17 15 13 19 19 Si 1.86804 * 120.00088 * 357.56123 * 17 15 13 20 20 H 1.48500 * 109.47318 * 274.91604 * 19 17 15 21 21 H 1.48503 * 109.46788 * 34.91221 * 19 17 15 22 22 H 1.48499 * 109.47342 * 154.91339 * 19 17 15 23 23 C 1.46846 * 110.99893 * 235.79143 * 2 1 3 24 24 H 1.09004 * 109.47098 * 63.94920 * 1 2 3 25 25 H 1.09002 * 109.47332 * 183.95085 * 1 2 3 26 26 H 1.09003 * 109.47238 * 303.95515 * 1 2 3 27 27 H 1.09005 * 109.45856 * 54.14627 * 3 2 1 28 28 H 1.09000 * 109.46789 * 294.17759 * 3 2 1 29 29 H 1.08998 * 109.50702 * 299.23805 * 4 3 2 30 30 H 1.09001 * 109.53357 * 179.14134 * 4 3 2 31 31 H 1.09008 * 109.52315 * 182.43485 * 5 4 3 32 32 H 1.09003 * 109.52651 * 62.25118 * 5 4 3 33 33 H 1.09004 * 109.46351 * 54.14512 * 9 8 6 34 34 H 1.08997 * 109.46278 * 294.17731 * 9 8 6 35 35 H 1.09008 * 109.49980 * 299.23989 * 10 9 8 36 36 H 1.08994 * 109.50218 * 179.12449 * 10 9 8 37 37 H 1.09010 * 109.52015 * 182.44329 * 11 10 9 38 38 H 1.08996 * 109.52362 * 62.25491 * 11 10 9 39 39 H 1.08994 * 109.50470 * 297.71501 * 12 11 10 40 40 H 1.08994 * 109.50011 * 177.59496 * 12 11 10 41 41 H 0.96998 * 120.00103 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46473 * 65.82472 * 23 2 1 43 43 H 1.09003 * 109.46414 * 305.85602 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1187 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0209 7 1 3.7819 -1.3839 -0.0957 8 7 4.0460 -1.6246 -2.1663 9 6 3.6910 -0.9727 -3.4334 10 6 4.3768 -1.6997 -4.5924 11 6 3.9285 -3.1637 -4.6068 12 6 4.2662 -3.8061 -3.2585 13 6 3.5836 -3.0181 -2.1383 14 1 2.5033 -3.0450 -2.2815 15 6 3.9292 -3.6351 -0.8076 16 1 4.8375 -3.3477 -0.2987 17 6 3.0861 -4.5666 -0.2398 18 7 3.4110 -5.1404 0.8980 19 14 1.4822 -5.0136 -1.0867 20 1 0.4303 -4.0389 -0.7009 21 1 1.6733 -4.9786 -2.5590 22 1 1.0679 -6.3784 -0.6736 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.5740 0.8524 27 1 1.5634 1.9257 0.8330 28 1 1.7325 1.8609 -0.9375 29 1 3.7813 0.8567 1.0907 30 1 3.9104 2.3509 0.1315 31 1 5.1998 0.4714 -0.8905 32 1 3.8887 1.0355 -1.9560 33 1 4.0191 0.0665 -3.4116 34 1 2.6103 -1.0094 -3.5704 35 1 5.4582 -1.6515 -4.4632 36 1 4.1007 -1.2252 -5.5339 37 1 4.4477 -3.6958 -5.4040 38 1 2.8527 -3.2136 -4.7748 39 1 5.3457 -3.7911 -3.1084 40 1 3.9109 -4.8365 -3.2473 41 1 2.8180 -5.7961 1.2973 42 1 1.7324 -0.2708 -2.0660 43 1 1.5633 -1.7715 -1.1243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259738717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:57 Heat of formation + Delta-G solvation = 0.489974 kcal Electronic energy + Delta-G solvation = -20682.823649 eV Core-core repulsion = 17955.230591 eV Total energy + Delta-G solvation = -2727.593057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48581 -37.28640 -33.61458 -32.83294 -31.94302 -30.20908 -28.37216 -26.43551 -25.32312 -23.50974 -22.64725 -21.59773 -20.72791 -19.29319 -18.18770 -16.84970 -15.88867 -14.97968 -14.83345 -14.47174 -14.09027 -13.89786 -13.61444 -13.42147 -13.08770 -12.83536 -12.56297 -12.45324 -12.27172 -11.99526 -11.66974 -11.39603 -11.08520 -10.94444 -10.80656 -10.62403 -10.41925 -10.28930 -10.16704 -9.91282 -9.82491 -9.67513 -9.30506 -8.89269 -8.52246 -7.98343 -7.20688 -6.04905 -4.02357 3.25653 3.35131 3.36374 4.23308 4.41645 4.79112 5.22675 5.24830 5.28754 5.34136 5.43769 5.48512 5.56392 5.64160 5.68101 5.73095 5.86433 5.88604 5.99990 6.05979 6.07401 6.09556 6.14552 6.22604 6.27217 6.37288 6.39312 6.50897 6.53371 6.62877 6.65223 6.84611 6.88562 6.94371 7.16246 7.36807 7.42712 7.45790 7.68789 8.09529 8.20956 8.70799 9.05870 9.59286 11.08350 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.011049 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.593454 B = 2533.605954 C = 3427.645927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.101 3.899 7 H 0.113 0.887 8 N -0.518 5.518 9 C 0.046 3.954 10 C -0.110 4.110 11 C -0.126 4.126 12 C -0.106 4.106 13 C 0.187 3.813 14 H 0.000 1.000 15 C -0.499 4.499 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.895 5.895 19 Si 0.864 3.136 20 H -0.277 1.277 21 H -0.266 1.266 22 H -0.289 1.289 23 C 0.032 3.968 24 H 0.017 0.983 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.263 0.737 42 H 0.021 0.979 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 11.089 -6.164 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.259 5.259 3 C -0.070 4.070 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.008 4.008 7 H 0.131 0.869 8 N -0.242 5.242 9 C -0.082 4.082 10 C -0.148 4.148 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.080 3.920 14 H 0.018 0.982 15 C -0.537 4.537 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.533 5.533 19 Si 0.692 3.308 20 H -0.203 1.203 21 H -0.191 1.191 22 H -0.215 1.215 23 C -0.098 4.098 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.162 10.695 -5.569 12.251 hybrid contribution -2.310 0.000 -1.268 2.635 sum -4.472 10.695 -6.837 13.459 Atomic orbital electron populations 1.22330 0.88119 1.02133 0.99543 1.61826 1.06819 1.13021 1.44274 1.22074 0.96123 0.89400 0.99424 1.21557 0.94043 0.99548 1.00184 1.21715 1.00689 0.95672 0.97177 1.21590 0.89200 0.92808 0.97207 0.86895 1.62260 1.58998 1.03238 0.99704 1.22134 0.96716 0.97872 0.91471 1.21519 1.01008 0.95747 0.96552 1.21707 0.99816 0.95858 0.98985 1.21801 1.01565 0.98560 0.92523 1.19673 0.92179 0.84409 0.95756 0.98231 1.20864 1.08788 1.22054 1.01996 0.90064 1.24919 0.97311 0.95770 0.94490 1.69872 1.37381 1.28040 1.18022 0.87086 0.85194 0.77865 0.80662 1.20341 1.19077 1.21511 1.22836 0.99083 0.97975 0.89868 0.96456 0.91507 0.91725 0.91369 0.95793 0.90777 0.92031 0.91250 0.93064 0.91806 0.96300 0.91478 0.93093 0.93174 0.93501 0.91818 0.92805 0.92692 0.96120 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.59 60.06 0.58 0.99 16 2 N -0.53 -9.38 4.91 -242.96 -1.19 -10.57 16 3 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 4 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 5 C -0.11 -1.85 5.15 -26.61 -0.14 -1.98 16 6 C 0.10 2.00 2.12 -67.63 -0.14 1.86 16 7 H 0.11 2.68 6.68 -51.93 -0.35 2.33 16 8 N -0.52 -10.64 4.47 -220.05 -0.98 -11.62 16 9 C 0.05 0.81 4.63 -3.83 -0.02 0.79 16 10 C -0.11 -1.77 6.09 -26.65 -0.16 -1.94 16 11 C -0.13 -2.22 6.00 -26.61 -0.16 -2.38 16 12 C -0.11 -2.26 5.33 -26.65 -0.14 -2.40 16 13 C 0.19 4.32 1.00 -68.88 -0.07 4.25 16 14 H 0.00 0.00 4.06 -51.93 -0.21 -0.21 16 15 C -0.50 -13.57 7.32 -34.44 -0.25 -13.82 16 16 H 0.08 2.46 7.98 -52.48 -0.42 2.04 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 18 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 19 Si 0.86 21.45 26.43 -169.99 -4.49 16.95 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.36 6.71 56.52 0.38 -5.98 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C 0.03 0.61 4.06 -3.83 -0.02 0.60 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.05 0.78 6.19 -51.93 -0.32 0.46 16 33 H 0.06 1.01 5.99 -51.93 -0.31 0.70 16 34 H 0.02 0.34 6.60 -51.93 -0.34 0.00 16 35 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.05 1.19 7.72 -51.93 -0.40 0.79 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.02 0.38 6.47 -51.93 -0.34 0.05 16 43 H 0.08 1.72 6.41 -51.93 -0.33 1.39 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -28.80 311.18 -9.68 -38.48 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.67 Total: 1.17 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.80 Total: -12.93 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.40 Total: -48.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.49 Total: 16.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.80 -9.68 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.970 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds