Wall clock time and date at job start Mon Mar 30 2020 03:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46850 * 110.99686 * 2 1 4 4 C 1.53042 * 109.52159 * 174.15791 * 3 2 1 5 5 C 1.53122 * 109.27773 * 59.17817 * 4 3 2 6 6 C 1.52995 * 109.52337 * 182.37554 * 5 4 3 7 7 H 1.09004 * 109.46409 * 304.87872 * 6 5 4 8 8 C 1.53040 * 109.46416 * 184.89588 * 6 5 4 9 9 C 1.53115 * 109.27922 * 180.79586 * 8 6 5 10 10 H 1.08995 * 109.57680 * 177.60369 * 9 8 6 11 11 C 1.50705 * 109.52979 * 297.76591 * 9 8 6 12 12 H 1.07996 * 120.00282 * 34.82372 * 11 9 8 13 13 C 1.37878 * 119.99620 * 214.81960 * 11 9 8 14 14 N 1.31519 * 120.00029 * 187.16436 * 13 11 9 15 15 Si 1.86801 * 120.00182 * 7.16702 * 13 11 9 16 16 H 1.48496 * 109.47342 * 84.87656 * 15 13 11 17 17 H 1.48501 * 109.47080 * 204.87477 * 15 13 11 18 18 H 1.48498 * 109.46905 * 324.87082 * 15 13 11 19 19 C 1.53121 * 109.15500 * 57.67036 * 9 8 6 20 20 C 1.53045 * 109.27610 * 302.34332 * 19 9 8 21 21 N 1.46845 * 109.52383 * 59.17576 * 20 19 9 22 22 C 1.53120 * 109.15970 * 302.34827 * 5 4 3 23 23 C 1.46847 * 111.00057 * 235.78846 * 2 1 3 24 24 H 1.09007 * 109.47031 * 60.00130 * 1 2 3 25 25 H 1.09006 * 109.47274 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47792 * 300.00077 * 1 2 3 27 27 H 1.08996 * 109.45891 * 54.14690 * 3 2 1 28 28 H 1.09000 * 109.45960 * 294.17298 * 3 2 1 29 29 H 1.09004 * 109.50134 * 299.24222 * 4 3 2 30 30 H 1.08996 * 109.53458 * 179.14128 * 4 3 2 31 31 H 1.09004 * 109.51996 * 62.24701 * 5 4 3 32 32 H 1.09004 * 109.50033 * 300.74764 * 8 6 5 33 33 H 1.08999 * 109.50095 * 60.86723 * 8 6 5 34 34 H 0.96989 * 120.00314 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.50585 * 182.39923 * 19 9 8 36 36 H 1.09000 * 109.53397 * 62.30121 * 19 9 8 37 37 H 1.09001 * 109.45984 * 299.15956 * 20 19 9 38 38 H 1.08996 * 109.46054 * 179.19237 * 20 19 9 39 39 H 1.00903 * 110.99612 * 174.15945 * 21 20 19 40 40 H 1.09002 * 109.50176 * 177.59614 * 22 5 4 41 41 H 1.09000 * 109.49950 * 297.70716 * 22 5 4 42 42 H 1.09000 * 109.46517 * 305.85626 * 23 2 1 43 43 H 1.08998 * 109.45919 * 65.82674 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 5.6363 0.4464 -0.8412 7 1 6.0514 1.4497 -0.7449 8 6 6.2485 -0.2438 -2.0623 9 6 7.7645 -0.3500 -1.8758 10 1 8.2005 -0.8788 -2.7233 11 6 8.3589 1.0318 -1.7845 12 1 7.8071 1.8264 -1.3045 13 6 9.6074 1.2815 -2.3137 14 7 10.1864 2.4451 -2.1121 15 14 10.4765 -0.0329 -3.3169 16 1 10.0183 0.0374 -4.7277 17 1 11.9435 0.1912 -3.2613 18 1 10.1589 -1.3720 -2.7593 19 6 8.0592 -1.1201 -0.5856 20 6 7.3944 -0.4048 0.5929 21 7 5.9455 -0.3291 0.3668 22 6 3.5181 -0.8714 -1.0207 23 6 1.9953 -0.7708 -1.1337 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.5633 1.9257 0.8330 28 1 1.7324 1.8608 -0.9376 29 1 3.7813 0.8568 1.0907 30 1 3.9103 2.3511 0.1315 31 1 3.8887 1.0355 -1.9559 32 1 5.8236 -1.2421 -2.1671 33 1 6.0321 0.3402 -2.9569 34 1 11.0647 2.6206 -2.4841 35 1 9.1364 -1.1623 -0.4249 36 1 7.6635 -2.1325 -0.6669 37 1 7.8012 0.6025 0.6825 38 1 7.5903 -0.9584 1.5111 39 1 5.4733 0.0531 1.1726 40 1 3.9099 -1.4302 -1.8706 41 1 3.7814 -1.3835 -0.0952 42 1 1.5634 -1.7716 -1.1242 43 1 1.7325 -0.2708 -2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259751461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:14 Heat of formation + Delta-G solvation = -12.715466 kcal Electronic energy + Delta-G solvation = -19939.707235 eV Core-core repulsion = 17211.541547 eV Total energy + Delta-G solvation = -2728.165688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.45994 -37.57088 -34.04161 -32.48532 -31.01785 -30.59330 -29.53962 -26.20253 -25.27523 -23.25749 -22.87287 -21.98637 -20.73869 -19.14357 -18.42317 -16.24881 -15.99369 -15.39041 -15.00346 -14.63987 -14.34058 -14.16648 -13.54153 -13.40696 -13.06586 -12.71043 -12.52974 -12.35650 -12.25775 -11.99322 -11.88015 -11.66002 -11.35262 -11.00112 -10.87769 -10.63680 -10.47426 -10.34567 -10.14069 -9.79641 -9.66372 -9.38108 -8.97151 -8.90364 -8.45540 -8.32002 -7.52815 -6.03920 -4.01168 3.31115 3.39637 3.42279 3.95718 4.45935 4.88438 4.94575 5.01514 5.09309 5.22323 5.28736 5.38013 5.42290 5.54270 5.60241 5.72059 5.75735 5.87709 5.94005 5.94426 6.09340 6.12972 6.23167 6.25841 6.35483 6.36633 6.47503 6.60148 6.68135 6.80455 6.85053 6.95419 7.01693 7.09693 7.13185 7.15070 7.27916 7.42560 7.86797 7.90456 8.15098 8.57319 9.00797 9.60931 11.09210 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038989 B = 0.005306 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.975870 B = 5275.968733 C = 5328.264847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.059 3.941 4 C -0.114 4.114 5 C -0.083 4.083 6 C 0.102 3.898 7 H 0.048 0.952 8 C -0.092 4.092 9 C 0.007 3.993 10 H 0.029 0.971 11 C -0.504 4.504 12 H 0.072 0.928 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.876 3.124 16 H -0.278 1.278 17 H -0.292 1.292 18 H -0.265 1.265 19 C -0.103 4.103 20 C 0.070 3.930 21 N -0.683 5.683 22 C -0.101 4.101 23 C 0.054 3.946 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.262 0.738 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.326 0.674 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.574 -5.028 3.672 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.069 4.069 4 C -0.152 4.152 5 C -0.102 4.102 6 C -0.007 4.007 7 H 0.066 0.934 8 C -0.130 4.130 9 C -0.012 4.012 10 H 0.047 0.953 11 C -0.542 4.542 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.543 5.543 15 Si 0.704 3.296 16 H -0.204 1.204 17 H -0.219 1.219 18 H -0.190 1.190 19 C -0.142 4.142 20 C -0.059 4.059 21 N -0.314 5.314 22 C -0.139 4.139 23 C -0.074 4.074 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.144 0.856 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.265 -5.743 3.732 16.731 hybrid contribution 0.507 0.803 -1.040 1.408 sum -14.758 -4.940 2.692 15.794 Atomic orbital electron populations 1.22339 0.88001 1.01730 1.00243 1.61930 1.06865 1.13952 1.43883 1.22071 0.96157 0.88798 0.99892 1.21676 0.93530 1.00165 0.99851 1.21296 0.95357 0.95896 0.97647 1.21371 0.92038 0.96024 0.91313 0.93377 1.21556 0.97499 0.98239 0.95725 1.19227 0.92322 0.96408 0.93250 0.95325 1.21028 1.01708 0.94196 1.37260 0.90983 1.25071 0.96997 0.95123 0.96027 1.69920 1.15772 1.23097 1.45487 0.86874 0.78421 0.83134 0.81161 1.20406 1.21860 1.19017 1.21689 0.98436 0.97036 0.97013 1.21747 0.87098 0.99849 0.97237 1.60436 1.09550 1.56244 1.05211 1.21545 0.91695 0.97122 1.03548 1.22195 0.97109 0.97384 0.90706 0.96094 0.91614 0.91652 0.91254 0.95261 0.90926 0.91788 0.91852 0.93729 0.92962 0.92855 0.93190 0.94540 0.93917 0.93238 0.85636 0.91578 0.89716 0.91306 0.95543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.59 60.06 0.58 0.82 16 2 N -0.54 -6.49 4.91 -242.95 -1.19 -7.68 16 3 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 4 C -0.11 -1.51 5.20 -26.65 -0.14 -1.65 16 5 C -0.08 -1.23 2.08 -90.50 -0.19 -1.42 16 6 C 0.10 1.84 1.99 -67.72 -0.13 1.71 16 7 H 0.05 1.02 6.43 -51.93 -0.33 0.69 16 8 C -0.09 -1.85 4.64 -26.65 -0.12 -1.97 16 9 C 0.01 0.16 2.31 -91.65 -0.21 -0.05 16 10 H 0.03 0.69 5.20 -51.93 -0.27 0.42 16 11 C -0.50 -13.66 7.43 -34.44 -0.26 -13.92 16 12 H 0.07 2.12 6.40 -52.49 -0.34 1.79 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 15 Si 0.88 21.64 27.06 -169.99 -4.60 17.04 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.27 -6.32 6.73 56.52 0.38 -5.94 16 19 C -0.10 -2.20 5.59 -26.65 -0.15 -2.35 16 20 C 0.07 1.35 6.34 -3.83 -0.02 1.32 16 21 N -0.68 -11.79 5.48 -106.76 -0.59 -12.37 16 22 C -0.10 -1.40 4.90 -26.65 -0.13 -1.53 16 23 C 0.05 0.65 5.46 -3.83 -0.02 0.63 16 24 H 0.02 0.19 8.14 -51.92 -0.42 -0.23 16 25 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.97 6.54 -51.93 -0.34 0.63 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.83 6.60 -51.93 -0.34 0.49 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.94 7.27 -51.93 -0.38 0.56 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.33 5.08 6.96 -39.29 -0.27 4.81 16 40 H 0.07 0.94 6.69 -51.93 -0.35 0.59 16 41 H 0.08 1.27 7.40 -51.93 -0.38 0.89 16 42 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -28.88 312.34 -9.47 -38.35 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.65 Total: 2.50 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -0.92 Total: -15.88 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -1.01 Total: -46.71 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.60 Total: 17.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.88 -9.47 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.632 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds