Wall clock time and date at job start Mon Mar 30 2020 03:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46850 * 110.99686 * 2 1 4 4 C 1.53042 * 109.52159 * 174.15791 * 3 2 1 5 5 C 1.53122 * 109.27773 * 59.17817 * 4 3 2 6 6 C 1.52995 * 109.52337 * 182.37554 * 5 4 3 7 7 H 1.09004 * 109.46409 * 304.87872 * 6 5 4 8 8 C 1.53040 * 109.46416 * 184.89588 * 6 5 4 9 9 C 1.53115 * 109.27922 * 180.79586 * 8 6 5 10 10 H 1.08995 * 109.57680 * 177.60369 * 9 8 6 11 11 C 1.50705 * 109.52979 * 297.76591 * 9 8 6 12 12 H 1.07996 * 120.00282 * 34.82372 * 11 9 8 13 13 C 1.37878 * 119.99620 * 214.81960 * 11 9 8 14 14 N 1.31519 * 120.00029 * 187.16436 * 13 11 9 15 15 Si 1.86801 * 120.00182 * 7.16702 * 13 11 9 16 16 H 1.48496 * 109.47342 * 84.87656 * 15 13 11 17 17 H 1.48501 * 109.47080 * 204.87477 * 15 13 11 18 18 H 1.48498 * 109.46905 * 324.87082 * 15 13 11 19 19 C 1.53121 * 109.15500 * 57.67036 * 9 8 6 20 20 C 1.53045 * 109.27610 * 302.34332 * 19 9 8 21 21 N 1.46845 * 109.52383 * 59.17576 * 20 19 9 22 22 C 1.53120 * 109.15970 * 302.34827 * 5 4 3 23 23 C 1.46847 * 111.00057 * 235.78846 * 2 1 3 24 24 H 1.09007 * 109.47031 * 60.00130 * 1 2 3 25 25 H 1.09006 * 109.47274 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47792 * 300.00077 * 1 2 3 27 27 H 1.08996 * 109.45891 * 54.14690 * 3 2 1 28 28 H 1.09000 * 109.45960 * 294.17298 * 3 2 1 29 29 H 1.09004 * 109.50134 * 299.24222 * 4 3 2 30 30 H 1.08996 * 109.53458 * 179.14128 * 4 3 2 31 31 H 1.09004 * 109.51996 * 62.24701 * 5 4 3 32 32 H 1.09004 * 109.50033 * 300.74764 * 8 6 5 33 33 H 1.08999 * 109.50095 * 60.86723 * 8 6 5 34 34 H 0.96989 * 120.00314 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.50585 * 182.39923 * 19 9 8 36 36 H 1.09000 * 109.53397 * 62.30121 * 19 9 8 37 37 H 1.09001 * 109.45984 * 299.15956 * 20 19 9 38 38 H 1.08996 * 109.46054 * 179.19237 * 20 19 9 39 39 H 1.00903 * 110.99612 * 174.15945 * 21 20 19 40 40 H 1.09002 * 109.50176 * 177.59614 * 22 5 4 41 41 H 1.09000 * 109.49950 * 297.70716 * 22 5 4 42 42 H 1.09000 * 109.46517 * 305.85626 * 23 2 1 43 43 H 1.08998 * 109.45919 * 65.82674 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 5.6363 0.4464 -0.8412 7 1 6.0514 1.4497 -0.7449 8 6 6.2485 -0.2438 -2.0623 9 6 7.7645 -0.3500 -1.8758 10 1 8.2005 -0.8788 -2.7233 11 6 8.3589 1.0318 -1.7845 12 1 7.8071 1.8264 -1.3045 13 6 9.6074 1.2815 -2.3137 14 7 10.1864 2.4451 -2.1121 15 14 10.4765 -0.0329 -3.3169 16 1 10.0183 0.0374 -4.7277 17 1 11.9435 0.1912 -3.2613 18 1 10.1589 -1.3720 -2.7593 19 6 8.0592 -1.1201 -0.5856 20 6 7.3944 -0.4048 0.5929 21 7 5.9455 -0.3291 0.3668 22 6 3.5181 -0.8714 -1.0207 23 6 1.9953 -0.7708 -1.1337 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.5633 1.9257 0.8330 28 1 1.7324 1.8608 -0.9376 29 1 3.7813 0.8568 1.0907 30 1 3.9103 2.3511 0.1315 31 1 3.8887 1.0355 -1.9559 32 1 5.8236 -1.2421 -2.1671 33 1 6.0321 0.3402 -2.9569 34 1 11.0647 2.6206 -2.4841 35 1 9.1364 -1.1623 -0.4249 36 1 7.6635 -2.1325 -0.6669 37 1 7.8012 0.6025 0.6825 38 1 7.5903 -0.9584 1.5111 39 1 5.4733 0.0531 1.1726 40 1 3.9099 -1.4302 -1.8706 41 1 3.7814 -1.3835 -0.0952 42 1 1.5634 -1.7716 -1.1242 43 1 1.7325 -0.2708 -2.0659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:13 Heat of formation + Delta-G solvation = -32.157669 kcal Electronic energy + Delta-G solvation = -19940.550312 eV Core-core repulsion = 17211.541547 eV Total energy + Delta-G solvation = -2729.008765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72903 -38.90962 -35.49406 -34.27978 -32.74155 -31.72376 -30.89572 -27.48916 -27.04933 -24.42630 -24.08993 -23.55915 -22.02073 -20.55864 -20.12941 -18.17535 -17.40914 -16.50180 -16.21768 -15.98355 -15.79243 -15.46846 -15.10961 -14.85773 -14.48504 -14.39815 -13.94326 -13.69499 -13.61748 -13.27395 -13.22678 -12.90511 -12.81859 -12.48278 -12.28009 -12.01785 -11.95629 -11.88339 -11.61338 -11.41760 -11.16103 -11.03065 -10.82823 -10.59402 -10.51319 -9.21358 -9.11525 -8.24041 -6.24622 1.34777 1.36331 1.46937 2.37667 3.07715 3.11803 3.44179 3.85617 3.88328 4.02866 4.24647 4.33125 4.39008 4.41682 4.50708 4.59095 4.62841 4.68574 4.69603 4.75009 4.83236 4.89000 4.90631 4.96658 5.05632 5.07066 5.10909 5.15499 5.26211 5.28569 5.29448 5.39197 5.41821 5.52055 5.66422 5.70223 5.84485 6.19397 6.23380 6.30749 6.38526 6.72748 6.81714 7.40041 8.92347 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038989 B = 0.005306 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.975870 B = 5275.968733 C = 5328.264847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.063 3.937 4 C -0.111 4.111 5 C -0.076 4.076 6 C 0.109 3.891 7 H 0.008 0.992 8 C -0.089 4.089 9 C 0.000 4.000 10 H 0.026 0.974 11 C -0.494 4.494 12 H 0.033 0.967 13 C 0.007 3.993 14 N -0.955 5.955 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.247 1.247 19 C -0.102 4.102 20 C 0.074 3.926 21 N -0.666 5.666 22 C -0.094 4.094 23 C 0.058 3.942 24 H 0.023 0.977 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.006 0.994 38 H 0.078 0.922 39 H 0.339 0.661 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 -7.306 3.878 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.065 4.065 4 C -0.149 4.149 5 C -0.095 4.095 6 C -0.001 4.001 7 H 0.026 0.974 8 C -0.127 4.127 9 C -0.019 4.019 10 H 0.044 0.956 11 C -0.532 4.532 12 H 0.052 0.948 13 C -0.188 4.188 14 N -0.596 5.596 15 Si 0.764 3.236 16 H -0.196 1.196 17 H -0.219 1.219 18 H -0.171 1.171 19 C -0.140 4.140 20 C -0.055 4.055 21 N -0.299 5.299 22 C -0.132 4.132 23 C -0.070 4.070 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -17.141 -8.037 3.949 19.339 hybrid contribution 1.022 1.570 -1.053 2.149 sum -16.118 -6.467 2.897 17.607 Atomic orbital electron populations 1.22398 0.86343 1.02662 1.00878 1.61939 1.08415 1.13645 1.43723 1.22022 0.94785 0.89275 1.00439 1.21621 0.94861 0.99431 0.98954 1.21197 0.92853 0.97324 0.98124 1.21224 0.94178 0.93630 0.91051 0.97428 1.21496 0.95491 0.99524 0.96224 1.19294 0.94227 0.94071 0.94330 0.95582 1.21239 1.01177 0.95324 1.35457 0.94830 1.25903 0.98091 0.97299 0.97537 1.70072 1.16427 1.25549 1.47530 0.85861 0.76973 0.81058 0.79744 1.19607 1.21949 1.17065 1.21621 0.98035 0.98042 0.96338 1.21655 0.87998 0.97972 0.97868 1.60442 1.08258 1.55670 1.05505 1.21452 0.93110 0.95627 1.02974 1.22139 0.95697 0.98312 0.90866 0.95799 0.90582 0.90664 0.89799 0.95450 0.90886 0.92499 0.92490 0.91481 0.93910 0.92950 0.94481 0.92184 0.97614 0.90403 0.84174 0.91860 0.90416 0.89853 0.95598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.63 16 2 N -0.55 -11.69 4.91 -922.57 -4.53 -16.22 16 3 C 0.06 1.36 5.46 86.33 0.47 1.83 16 4 C -0.11 -2.81 5.20 30.65 0.16 -2.65 16 5 C -0.08 -2.19 2.08 -10.71 -0.02 -2.21 16 6 C 0.11 3.94 1.99 44.94 0.09 4.03 16 7 H 0.01 0.35 6.43 -2.38 -0.02 0.33 16 8 C -0.09 -3.53 4.64 30.65 0.14 -3.38 16 9 C 0.00 -0.01 2.31 -11.46 -0.03 -0.04 16 10 H 0.03 1.21 5.20 -2.39 -0.01 1.20 16 11 C -0.49 -27.63 7.43 25.60 0.19 -27.44 16 12 H 0.03 2.10 6.40 -2.91 -0.02 2.08 16 13 C 0.01 0.44 5.47 84.65 0.46 0.90 16 14 N -0.95 -60.07 13.96 21.45 0.30 -59.78 16 15 Si 0.94 44.85 27.06 68.60 1.86 46.70 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 18 H -0.25 -10.97 6.73 99.48 0.67 -10.30 16 19 C -0.10 -4.21 5.59 30.65 0.17 -4.04 16 20 C 0.07 2.83 6.34 86.33 0.55 3.38 16 21 N -0.67 -22.21 5.48 -491.67 -2.70 -24.91 16 22 C -0.09 -2.39 4.90 30.65 0.15 -2.24 16 23 C 0.06 1.24 5.46 86.33 0.47 1.72 16 24 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16 25 H 0.08 1.07 8.09 -2.38 -0.02 1.06 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 1.84 6.54 -2.38 -0.02 1.83 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.07 2.36 6.60 -2.38 -0.02 2.34 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.26 15.55 8.31 -92.72 -0.77 14.78 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.01 0.25 7.27 -2.39 -0.02 0.23 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.34 10.09 6.96 -89.69 -0.62 9.46 16 40 H 0.06 1.64 6.69 -2.39 -0.02 1.62 16 41 H 0.08 2.11 7.40 -2.39 -0.02 2.10 16 42 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 43 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -63.46 312.34 -0.73 -64.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.31 Total: 18.53 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.03 Total: -28.52 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -6.93 Total: -100.91 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.86 Total: 46.70 kcal Total: -63.46 -0.73 -64.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.031 kcal (2) G-P(sol) polarization free energy of solvation -63.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds