Wall clock time and date at job start Mon Mar 30 2020 03:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46846 * 110.99717 * 2 1 4 4 C 1.53036 * 109.52384 * 174.15896 * 3 2 1 5 5 C 1.53123 * 109.27788 * 59.18000 * 4 3 2 6 6 C 1.52995 * 109.52352 * 182.44354 * 5 4 3 7 7 H 1.08996 * 109.46995 * 60.01841 * 6 5 4 8 8 C 1.53042 * 109.46266 * 180.02562 * 6 5 4 9 9 C 1.53122 * 109.27755 * 179.19151 * 8 6 5 10 10 H 1.09001 * 109.51988 * 182.43696 * 9 8 6 11 11 C 1.50699 * 109.52110 * 62.31634 * 9 8 6 12 12 H 1.07994 * 120.00017 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99778 * 179.97438 * 11 9 8 14 14 N 1.31514 * 119.99547 * 179.97438 * 13 11 9 15 15 Si 1.86792 * 120.00009 * 359.97438 * 13 11 9 16 16 H 1.48507 * 109.47238 * 90.00233 * 15 13 11 17 17 H 1.48499 * 109.47062 * 209.99761 * 15 13 11 18 18 H 1.48497 * 109.47566 * 330.00505 * 15 13 11 19 19 C 1.53117 * 109.16190 * 302.34702 * 9 8 6 20 20 C 1.53033 * 109.28209 * 57.65414 * 19 9 8 21 21 N 1.46848 * 109.46126 * 300.05147 * 6 5 4 22 22 C 1.53124 * 109.15980 * 302.34618 * 5 4 3 23 23 C 1.46842 * 111.00077 * 235.79299 * 2 1 3 24 24 H 1.08992 * 109.47191 * 60.00131 * 1 2 3 25 25 H 1.09005 * 109.46582 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47288 * 299.99458 * 1 2 3 27 27 H 1.08999 * 109.46089 * 54.14588 * 3 2 1 28 28 H 1.08998 * 109.46294 * 294.17617 * 3 2 1 29 29 H 1.09000 * 109.50632 * 179.12292 * 4 3 2 30 30 H 1.09006 * 109.50216 * 299.24086 * 4 3 2 31 31 H 1.09000 * 109.52181 * 62.25097 * 5 4 3 32 32 H 1.09000 * 109.50208 * 299.13319 * 8 6 5 33 33 H 1.08997 * 109.49954 * 59.21363 * 8 6 5 34 34 H 0.97001 * 119.99676 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.50460 * 177.59868 * 19 9 8 36 36 H 1.09007 * 109.49982 * 297.71269 * 19 9 8 37 37 H 1.09004 * 109.46007 * 60.83625 * 20 19 9 38 38 H 1.08999 * 109.46627 * 180.80414 * 20 19 9 39 39 H 1.00901 * 111.00455 * 302.33883 * 21 6 5 40 40 H 1.08997 * 109.50272 * 297.71554 * 22 5 4 41 41 H 1.08999 * 109.50255 * 177.59425 * 22 5 4 42 42 H 1.09006 * 109.46447 * 305.84971 * 23 2 1 43 43 H 1.08994 * 109.46873 * 65.82005 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 5.6361 0.4451 -0.8404 7 1 5.8642 -0.0564 0.1000 8 6 6.2351 -0.3514 -2.0019 9 6 7.7554 -0.4236 -1.8344 10 1 8.1905 -0.9529 -2.6822 11 6 8.0873 -1.1556 -0.5596 12 1 7.2941 -1.5317 0.0693 13 6 9.4039 -1.3450 -0.1963 14 7 9.6935 -1.9834 0.9165 15 14 10.7759 -0.6950 -1.2845 16 1 11.1207 0.6895 -0.8725 17 1 11.9715 -1.5648 -1.1462 18 1 10.3264 -0.6927 -2.6998 19 6 8.3223 0.9974 -1.7726 20 6 7.6629 1.7547 -0.6178 21 7 6.2097 1.7968 -0.8255 22 6 3.5182 -0.8714 -1.0208 23 6 1.9953 -0.7707 -1.1337 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.5633 1.9257 0.8330 28 1 1.7324 1.8608 -0.9376 29 1 3.9098 2.3513 0.1311 30 1 3.7813 0.8568 1.0907 31 1 3.8887 1.0356 -1.9560 32 1 5.8208 -1.3596 -2.0037 33 1 5.9952 0.1424 -2.9436 34 1 10.6197 -2.1170 1.1719 35 1 9.3993 0.9528 -1.6106 36 1 8.1159 1.5127 -2.7107 37 1 7.8813 1.2466 0.3215 38 1 8.0539 2.7715 -0.5799 39 1 5.9794 2.2968 -1.6712 40 1 3.7814 -1.3835 -0.0953 41 1 3.9100 -1.4302 -1.8707 42 1 1.5635 -1.7715 -1.1242 43 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259751468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:17 Heat of formation + Delta-G solvation = -9.641059 kcal Electronic energy + Delta-G solvation = -19996.629492 eV Core-core repulsion = 17268.597121 eV Total energy + Delta-G solvation = -2728.032372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42844 -37.80070 -34.08487 -32.55765 -31.02503 -30.41200 -29.65811 -26.25843 -25.04785 -23.19036 -22.98064 -21.81824 -20.68437 -19.50952 -18.90235 -16.33128 -15.86196 -15.09302 -14.96198 -14.66220 -14.55669 -13.97549 -13.72520 -13.38348 -13.08286 -12.78482 -12.62914 -12.41042 -12.31171 -12.04845 -11.90156 -11.51985 -11.19114 -11.00533 -10.93029 -10.64878 -10.28261 -10.14244 -10.13505 -10.05321 -9.76659 -9.62640 -9.15463 -8.89128 -8.52094 -8.28159 -7.52878 -6.05119 -4.02800 3.26360 3.37808 3.39515 4.00065 4.42128 4.80229 4.99844 5.06821 5.14008 5.26971 5.31356 5.38964 5.51935 5.59134 5.66341 5.72908 5.77551 5.83746 5.92705 5.96362 6.01362 6.08967 6.16768 6.24905 6.27161 6.34077 6.41866 6.55097 6.61005 6.69718 6.72553 6.80720 7.04087 7.07380 7.14750 7.14911 7.17582 7.40054 7.80691 7.82296 8.13435 8.54706 8.99073 9.58096 11.07842 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.005607 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.334442 B = 4992.890417 C = 5232.732931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.055 3.945 4 C -0.101 4.101 5 C -0.078 4.078 6 C 0.101 3.899 7 H 0.094 0.906 8 C -0.128 4.128 9 C 0.009 3.991 10 H 0.022 0.978 11 C -0.503 4.503 12 H 0.075 0.925 13 C 0.070 3.930 14 N -0.901 5.901 15 Si 0.885 3.115 16 H -0.279 1.279 17 H -0.299 1.299 18 H -0.270 1.270 19 C -0.155 4.155 20 C 0.070 3.930 21 N -0.678 5.678 22 C -0.113 4.113 23 C 0.059 3.941 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.321 0.679 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 6.439 -4.531 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.009 4.009 7 H 0.112 0.888 8 C -0.167 4.167 9 C -0.010 4.010 10 H 0.040 0.960 11 C -0.541 4.541 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.227 1.227 18 H -0.195 1.195 19 C -0.194 4.194 20 C -0.059 4.059 21 N -0.305 5.305 22 C -0.151 4.151 23 C -0.069 4.069 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.943 6.257 -3.293 15.634 hybrid contribution 0.992 0.355 -2.256 2.489 sum -12.952 6.611 -5.548 15.564 Atomic orbital electron populations 1.22337 0.87996 1.01725 1.00219 1.61930 1.06893 1.14282 1.43697 1.22169 0.96956 0.88456 0.99644 1.21518 0.91978 1.01226 0.99173 1.21208 0.95267 0.95336 0.97904 1.21535 0.90723 0.88645 0.99950 0.88808 1.22109 0.98076 0.99987 0.96496 1.19205 0.91765 0.91913 0.98106 0.95957 1.20977 0.93082 1.34892 1.05152 0.90670 1.25000 0.98612 0.94813 0.94714 1.69901 1.18857 1.42103 1.23038 0.86882 0.81687 0.77998 0.81831 1.20660 1.22684 1.19484 1.22535 1.00038 0.99597 0.97199 1.21841 0.86204 0.97902 0.99942 1.60785 1.11959 1.16496 1.41255 1.21671 0.92945 0.97367 1.03103 1.22102 0.96397 0.97591 0.90829 0.96161 0.91633 0.91598 0.91291 0.95543 0.90500 0.91226 0.92673 0.92148 0.94909 0.92785 0.93350 0.94978 0.89290 0.93109 0.86321 0.90689 0.91196 0.91155 0.95464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.59 60.07 0.58 0.83 16 2 N -0.54 -6.85 4.91 -242.96 -1.19 -8.04 16 3 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 4 C -0.10 -1.41 5.18 -26.65 -0.14 -1.55 16 5 C -0.08 -1.15 1.97 -90.49 -0.18 -1.33 16 6 C 0.10 1.81 1.79 -67.72 -0.12 1.68 16 7 H 0.09 2.01 6.78 -51.93 -0.35 1.66 16 8 C -0.13 -2.46 4.45 -26.65 -0.12 -2.57 16 9 C 0.01 0.21 2.19 -91.65 -0.20 0.01 16 10 H 0.02 0.54 7.19 -51.93 -0.37 0.17 16 11 C -0.50 -13.58 7.33 -34.44 -0.25 -13.83 16 12 H 0.08 2.21 7.11 -52.49 -0.37 1.83 16 13 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 14 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 15 Si 0.89 21.99 24.41 -169.99 -4.15 17.84 16 16 H -0.28 -6.77 6.85 56.52 0.39 -6.38 16 17 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 18 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 19 C -0.15 -3.28 5.09 -26.65 -0.14 -3.42 16 20 C 0.07 1.39 6.35 -3.83 -0.02 1.36 16 21 N -0.68 -11.73 5.79 -106.76 -0.62 -12.34 16 22 C -0.11 -1.61 4.96 -26.65 -0.13 -1.74 16 23 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.17 6.55 -51.93 -0.34 0.83 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 1.10 3.29 -51.93 -0.17 0.93 16 36 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.09 2.04 7.31 -51.93 -0.38 1.66 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.32 5.02 8.79 -39.29 -0.35 4.68 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.99 6.60 -51.93 -0.34 0.65 16 42 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -28.58 310.18 -9.13 -37.70 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.75 Total: 3.92 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.86 Total: -17.30 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -1.04 Total: -46.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.58 -9.13 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.063 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds