Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46846 * 110.99717 * 2 1 4 4 C 1.53036 * 109.52384 * 174.15896 * 3 2 1 5 5 C 1.53123 * 109.27788 * 59.18000 * 4 3 2 6 6 C 1.52995 * 109.52352 * 182.44354 * 5 4 3 7 7 H 1.08996 * 109.46995 * 60.01841 * 6 5 4 8 8 C 1.53042 * 109.46266 * 180.02562 * 6 5 4 9 9 C 1.53122 * 109.27755 * 179.19151 * 8 6 5 10 10 H 1.09001 * 109.51988 * 182.43696 * 9 8 6 11 11 C 1.50699 * 109.52110 * 62.31634 * 9 8 6 12 12 H 1.07994 * 120.00017 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99778 * 179.97438 * 11 9 8 14 14 N 1.31514 * 119.99547 * 179.97438 * 13 11 9 15 15 Si 1.86792 * 120.00009 * 359.97438 * 13 11 9 16 16 H 1.48507 * 109.47238 * 90.00233 * 15 13 11 17 17 H 1.48499 * 109.47062 * 209.99761 * 15 13 11 18 18 H 1.48497 * 109.47566 * 330.00505 * 15 13 11 19 19 C 1.53117 * 109.16190 * 302.34702 * 9 8 6 20 20 C 1.53033 * 109.28209 * 57.65414 * 19 9 8 21 21 N 1.46848 * 109.46126 * 300.05147 * 6 5 4 22 22 C 1.53124 * 109.15980 * 302.34618 * 5 4 3 23 23 C 1.46842 * 111.00077 * 235.79299 * 2 1 3 24 24 H 1.08992 * 109.47191 * 60.00131 * 1 2 3 25 25 H 1.09005 * 109.46582 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47288 * 299.99458 * 1 2 3 27 27 H 1.08999 * 109.46089 * 54.14588 * 3 2 1 28 28 H 1.08998 * 109.46294 * 294.17617 * 3 2 1 29 29 H 1.09000 * 109.50632 * 179.12292 * 4 3 2 30 30 H 1.09006 * 109.50216 * 299.24086 * 4 3 2 31 31 H 1.09000 * 109.52181 * 62.25097 * 5 4 3 32 32 H 1.09000 * 109.50208 * 299.13319 * 8 6 5 33 33 H 1.08997 * 109.49954 * 59.21363 * 8 6 5 34 34 H 0.97001 * 119.99676 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.50460 * 177.59868 * 19 9 8 36 36 H 1.09007 * 109.49982 * 297.71269 * 19 9 8 37 37 H 1.09004 * 109.46007 * 60.83625 * 20 19 9 38 38 H 1.08999 * 109.46627 * 180.80414 * 20 19 9 39 39 H 1.00901 * 111.00455 * 302.33883 * 21 6 5 40 40 H 1.08997 * 109.50272 * 297.71554 * 22 5 4 41 41 H 1.08999 * 109.50255 * 177.59425 * 22 5 4 42 42 H 1.09006 * 109.46447 * 305.84971 * 23 2 1 43 43 H 1.08994 * 109.46873 * 65.82005 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 5.6361 0.4451 -0.8404 7 1 5.8642 -0.0564 0.1000 8 6 6.2351 -0.3514 -2.0019 9 6 7.7554 -0.4236 -1.8344 10 1 8.1905 -0.9529 -2.6822 11 6 8.0873 -1.1556 -0.5596 12 1 7.2941 -1.5317 0.0693 13 6 9.4039 -1.3450 -0.1963 14 7 9.6935 -1.9834 0.9165 15 14 10.7759 -0.6950 -1.2845 16 1 11.1207 0.6895 -0.8725 17 1 11.9715 -1.5648 -1.1462 18 1 10.3264 -0.6927 -2.6998 19 6 8.3223 0.9974 -1.7726 20 6 7.6629 1.7547 -0.6178 21 7 6.2097 1.7968 -0.8255 22 6 3.5182 -0.8714 -1.0208 23 6 1.9953 -0.7707 -1.1337 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.5633 1.9257 0.8330 28 1 1.7324 1.8608 -0.9376 29 1 3.9098 2.3513 0.1311 30 1 3.7813 0.8568 1.0907 31 1 3.8887 1.0356 -1.9560 32 1 5.8208 -1.3596 -2.0037 33 1 5.9952 0.1424 -2.9436 34 1 10.6197 -2.1170 1.1719 35 1 9.3993 0.9528 -1.6106 36 1 8.1159 1.5127 -2.7107 37 1 7.8813 1.2466 0.3215 38 1 8.0539 2.7715 -0.5799 39 1 5.9794 2.2968 -1.6712 40 1 3.7814 -1.3835 -0.0953 41 1 3.9100 -1.4302 -1.8707 42 1 1.5635 -1.7715 -1.1242 43 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = -29.974184 kcal Electronic energy + Delta-G solvation = -19997.511203 eV Core-core repulsion = 17268.597121 eV Total energy + Delta-G solvation = -2728.914082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74845 -39.12374 -35.51143 -34.36067 -32.70001 -31.65181 -31.03496 -27.36252 -27.00773 -24.40054 -24.28319 -23.28683 -22.00118 -21.01048 -20.38770 -18.37123 -17.19450 -16.58641 -16.22749 -15.94525 -15.66644 -15.47693 -15.20969 -14.90536 -14.60429 -14.37109 -14.24239 -13.69647 -13.54112 -13.23120 -13.13595 -13.02696 -12.64346 -12.43535 -12.26767 -12.06004 -11.91966 -11.85874 -11.74643 -11.39312 -11.32484 -11.06499 -10.84473 -10.81751 -10.59331 -9.19213 -9.04758 -8.25857 -6.26674 1.28040 1.33550 1.43269 2.33031 3.09076 3.10039 3.41906 3.81772 3.97718 4.08653 4.20844 4.26861 4.32669 4.43180 4.46069 4.52286 4.58173 4.64250 4.67605 4.68873 4.78147 4.84170 4.87643 4.95298 5.00236 5.04625 5.05327 5.14383 5.17449 5.20225 5.34738 5.41485 5.43312 5.49452 5.59256 5.65300 5.78515 6.21800 6.23367 6.27676 6.36492 6.77959 6.80254 7.37121 8.90963 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.005607 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.334442 B = 4992.890417 C = 5232.732931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.565 5.565 3 C 0.061 3.939 4 C -0.096 4.096 5 C -0.068 4.068 6 C 0.111 3.889 7 H 0.045 0.955 8 C -0.122 4.122 9 C 0.002 3.998 10 H 0.015 0.985 11 C -0.493 4.493 12 H 0.033 0.967 13 C 0.011 3.989 14 N -0.952 5.952 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.304 1.304 18 H -0.253 1.253 19 C -0.153 4.153 20 C 0.076 3.924 21 N -0.668 5.668 22 C -0.111 4.111 23 C 0.065 3.935 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.341 0.659 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 8.629 -6.992 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.290 5.290 3 C -0.067 4.067 4 C -0.134 4.134 5 C -0.087 4.087 6 C 0.000 4.000 7 H 0.063 0.937 8 C -0.161 4.161 9 C -0.017 4.017 10 H 0.033 0.967 11 C -0.532 4.532 12 H 0.051 0.949 13 C -0.185 4.185 14 N -0.593 5.593 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.233 1.233 18 H -0.177 1.177 19 C -0.192 4.192 20 C -0.054 4.054 21 N -0.296 5.296 22 C -0.150 4.150 23 C -0.063 4.063 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.159 0.841 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.374 8.466 -5.776 18.477 hybrid contribution 1.351 -0.382 -1.425 2.001 sum -14.022 8.084 -7.202 17.716 Atomic orbital electron populations 1.22374 0.86178 1.02488 1.01076 1.61902 1.08649 1.14475 1.43999 1.22102 0.95199 0.88654 1.00711 1.21439 0.93768 1.00750 0.97440 1.21112 0.92538 0.95915 0.99098 1.21326 0.93124 0.88402 0.97106 0.93669 1.22054 0.95438 1.00327 0.98328 1.19236 0.94593 0.92711 0.95122 0.96724 1.21192 0.91896 1.34050 1.06017 0.94911 1.25808 1.01336 0.95368 0.96004 1.70061 1.19296 1.44571 1.25392 0.85874 0.78235 0.77697 0.80710 1.19298 1.23253 1.17715 1.22489 0.98996 0.98416 0.99313 1.21700 0.87597 0.98670 0.97418 1.60685 1.10412 1.16074 1.42447 1.21627 0.94906 0.96851 1.01597 1.22024 0.94512 0.98367 0.91420 0.95136 0.91009 0.90832 0.90265 0.94283 0.90160 0.93991 0.90627 0.92986 0.91829 0.92910 0.94790 0.91544 0.93643 0.90303 0.84115 0.93599 0.91205 0.90374 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.59 127.69 1.22 1.69 16 2 N -0.56 -13.16 4.91 -922.60 -4.53 -17.69 16 3 C 0.06 1.35 5.46 86.33 0.47 1.82 16 4 C -0.10 -2.58 5.18 30.65 0.16 -2.42 16 5 C -0.07 -1.90 1.97 -10.71 -0.02 -1.92 16 6 C 0.11 3.93 1.79 44.94 0.08 4.01 16 7 H 0.04 2.06 6.78 -2.39 -0.02 2.05 16 8 C -0.12 -4.58 4.45 30.65 0.14 -4.44 16 9 C 0.00 0.10 2.19 -11.46 -0.03 0.08 16 10 H 0.01 0.69 7.19 -2.39 -0.02 0.67 16 11 C -0.49 -27.68 7.33 25.60 0.19 -27.50 16 12 H 0.03 2.07 7.11 -2.91 -0.02 2.04 16 13 C 0.01 0.64 5.45 84.66 0.46 1.10 16 14 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 15 Si 0.95 45.67 24.41 68.60 1.67 47.34 16 16 H -0.27 -12.23 6.85 99.48 0.68 -11.55 16 17 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 18 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 19 C -0.15 -6.14 5.09 30.64 0.16 -5.98 16 20 C 0.08 2.89 6.35 86.32 0.55 3.44 16 21 N -0.67 -21.88 5.79 -491.67 -2.85 -24.72 16 22 C -0.11 -3.14 4.96 30.65 0.15 -2.99 16 23 C 0.06 1.48 5.46 86.33 0.47 1.95 16 24 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 2.09 7.69 -2.39 -0.02 2.07 16 30 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 2.01 6.55 -2.39 -0.02 2.00 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.03 1.47 3.29 -2.39 -0.01 1.46 16 36 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.04 2.13 7.31 -2.38 -0.02 2.11 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.34 9.29 8.79 -89.69 -0.79 8.50 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.94 6.60 -2.39 -0.02 1.92 16 42 H 0.08 1.66 8.09 -2.38 -0.02 1.65 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -64.57 310.18 -1.30 -65.87 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.10 Total: 20.28 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 4.00 Total: -31.15 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -7.08 Total: -102.35 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -64.57 -1.30 -65.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.898 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds