Wall clock time and date at job start Mon Mar 30 2020 03:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46852 * 110.99645 * 2 1 4 4 C 1.53033 * 109.51973 * 174.16029 * 3 2 1 5 5 C 1.53118 * 109.27820 * 59.18509 * 4 3 2 6 6 C 1.52998 * 109.52294 * 182.44163 * 5 4 3 7 7 H 1.09007 * 109.46378 * 179.70385 * 6 5 4 8 8 C 1.53037 * 109.46160 * 299.67575 * 6 5 4 9 9 C 1.53115 * 109.28341 * 179.19516 * 8 6 5 10 10 H 1.09005 * 109.52175 * 62.31383 * 9 8 6 11 11 C 1.50699 * 109.52930 * 182.44179 * 9 8 6 12 12 H 1.08005 * 119.99590 * 5.43521 * 11 9 8 13 13 C 1.37870 * 120.00608 * 185.43304 * 11 9 8 14 14 N 1.31518 * 119.99845 * 9.55059 * 13 11 9 15 15 Si 1.86798 * 120.00275 * 189.55249 * 13 11 9 16 16 H 1.48502 * 109.46959 * 94.99072 * 15 13 11 17 17 H 1.48501 * 109.47104 * 214.98798 * 15 13 11 18 18 H 1.48496 * 109.46993 * 334.98872 * 15 13 11 19 19 C 1.53121 * 109.15994 * 302.35245 * 9 8 6 20 20 C 1.53032 * 109.28043 * 57.65202 * 19 9 8 21 21 N 1.46841 * 109.46788 * 59.73388 * 6 5 4 22 22 C 1.53123 * 109.15698 * 302.34052 * 5 4 3 23 23 C 1.46844 * 110.99794 * 235.79312 * 2 1 3 24 24 H 1.09004 * 109.46769 * 184.21177 * 1 2 3 25 25 H 1.09000 * 109.47444 * 64.20721 * 1 2 3 26 26 H 1.09000 * 109.47292 * 304.20193 * 1 2 3 27 27 H 1.08992 * 109.46555 * 294.18213 * 3 2 1 28 28 H 1.08997 * 109.45776 * 54.14846 * 3 2 1 29 29 H 1.08997 * 109.50715 * 299.23957 * 4 3 2 30 30 H 1.09000 * 109.50185 * 179.11792 * 4 3 2 31 31 H 1.08999 * 109.57762 * 62.27631 * 5 4 3 32 32 H 1.08998 * 109.50738 * 299.14397 * 8 6 5 33 33 H 1.09010 * 109.50012 * 59.25761 * 8 6 5 34 34 H 0.96999 * 120.00430 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.50205 * 177.59096 * 19 9 8 36 36 H 1.08997 * 109.49955 * 297.70742 * 19 9 8 37 37 H 1.08997 * 109.46667 * 60.83581 * 20 19 9 38 38 H 1.09004 * 109.45964 * 180.81810 * 20 19 9 39 39 H 1.00905 * 110.99778 * 302.33501 * 21 6 5 40 40 H 1.09000 * 109.50420 * 297.70938 * 22 5 4 41 41 H 1.09002 * 109.50327 * 177.59669 * 22 5 4 42 42 H 1.08997 * 109.46546 * 305.85009 * 23 2 1 43 43 H 1.08997 * 109.46356 * 65.82069 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 0.1468 5 6 4.1187 0.5372 -1.0144 6 6 5.6360 0.4451 -0.8406 7 1 6.0620 -0.1270 -1.6649 8 6 6.2349 1.8534 -0.8343 9 6 7.7506 1.7575 -0.6400 10 1 8.1914 1.2148 -1.4763 11 6 8.3386 3.1434 -0.5730 12 1 7.6889 4.0061 -0.5717 13 6 9.7059 3.3101 -0.5131 14 7 10.5027 2.2811 -0.7029 15 14 10.4267 4.9973 -0.1625 16 1 10.7035 5.1250 1.2909 17 1 11.6910 5.1634 -0.9236 18 1 9.4588 6.0448 -0.5761 19 6 8.0438 1.0135 0.6658 20 6 7.3926 -0.3705 0.6160 21 7 5.9433 -0.2245 0.4296 22 6 3.5181 -0.8713 -1.0209 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3633 -1.0249 0.0755 25 1 -0.3634 0.4471 -0.9253 26 1 -0.3634 0.5777 0.8499 27 1 1.7323 1.8609 -0.9374 28 1 1.5633 1.9257 0.8330 29 1 3.7813 0.8568 1.0906 30 1 3.9098 2.3513 0.1310 31 1 3.8895 1.0352 -1.9565 32 1 6.0200 2.3445 -1.7834 33 1 5.7992 2.4305 -0.0185 34 1 11.4647 2.3983 -0.6612 35 1 9.1213 0.9044 0.7884 36 1 7.6366 1.5773 1.5051 37 1 7.8101 -0.9387 -0.2152 38 1 7.5872 -0.8973 1.5502 39 1 5.5264 0.2657 1.2069 40 1 3.7814 -1.3835 -0.0955 41 1 3.9098 -1.4301 -1.8709 42 1 1.5635 -1.7715 -1.1243 43 1 1.7324 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259751476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:19 Heat of formation + Delta-G solvation = -19.292616 kcal Electronic energy + Delta-G solvation = -19741.303576 eV Core-core repulsion = 17012.852681 eV Total energy + Delta-G solvation = -2728.450895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50831 -37.56799 -34.05797 -32.68419 -30.79674 -30.28038 -29.45435 -26.18360 -25.16677 -23.38967 -22.80689 -21.78021 -20.68186 -19.28576 -18.79493 -16.35787 -15.70481 -15.10678 -14.89893 -14.67506 -14.45465 -14.19713 -13.56394 -13.25341 -13.12106 -12.79530 -12.60213 -12.32161 -12.09612 -11.96240 -11.64293 -11.47976 -11.21558 -10.89784 -10.87746 -10.70543 -10.56431 -10.31824 -10.13687 -10.02773 -9.76037 -9.40565 -9.20365 -8.86525 -8.32872 -8.31398 -7.47598 -6.00551 -4.02781 3.29482 3.37058 3.39806 3.95186 4.44032 4.91523 4.92375 5.01260 5.11017 5.18588 5.30505 5.35307 5.41819 5.53416 5.58565 5.72206 5.75808 5.82433 5.90979 5.93600 6.08993 6.12127 6.22598 6.31433 6.36404 6.43212 6.49210 6.51913 6.67532 6.74804 6.80156 7.03708 7.09897 7.11611 7.15000 7.33717 7.60570 7.81741 7.98602 8.04507 8.08927 8.46223 9.01322 9.60666 11.07567 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038140 B = 0.004942 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.963326 B = 5664.168190 C = 6062.661132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.058 3.942 4 C -0.114 4.114 5 C -0.078 4.078 6 C 0.092 3.908 7 H 0.071 0.929 8 C -0.138 4.138 9 C 0.049 3.951 10 H 0.030 0.970 11 C -0.515 4.515 12 H 0.052 0.948 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.138 4.138 20 C 0.055 3.945 21 N -0.680 5.680 22 C -0.104 4.104 23 C 0.055 3.945 24 H 0.065 0.935 25 H 0.020 0.980 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.331 0.669 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -5.185 0.853 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.097 4.097 6 C -0.018 4.018 7 H 0.089 0.911 8 C -0.177 4.177 9 C 0.030 3.970 10 H 0.048 0.952 11 C -0.553 4.553 12 H 0.070 0.930 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.713 3.287 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.177 4.177 20 C -0.074 4.074 21 N -0.309 5.309 22 C -0.141 4.141 23 C -0.073 4.073 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.478 -6.111 1.007 16.671 hybrid contribution 0.535 2.374 -0.369 2.461 sum -14.942 -3.737 0.639 15.416 Atomic orbital electron populations 1.22340 0.87990 1.01888 1.00101 1.61930 1.06869 1.14085 1.43722 1.22104 0.96391 0.88646 0.99883 1.21702 0.93117 1.00641 0.99748 1.21220 0.95002 0.95659 0.97850 1.21554 0.92921 0.94514 0.92783 0.91089 1.22360 0.99555 0.95313 1.00429 1.18659 0.88976 0.95737 0.93608 0.95164 1.21184 0.91394 0.92229 1.50518 0.92954 1.24954 0.97278 0.96393 0.95125 1.69968 1.03440 1.30081 1.49138 0.86699 0.78664 0.85018 0.78346 1.20764 1.21323 1.19972 1.22197 1.01851 0.94013 0.99673 1.22060 0.87172 0.97988 1.00219 1.60887 1.11821 1.54122 1.04118 1.21547 0.92181 0.97185 1.03232 1.22153 0.96856 0.97472 0.90777 0.91610 0.96103 0.91630 0.95334 0.91201 0.90717 0.91162 0.91986 0.93409 0.93213 0.93110 0.90885 0.94658 0.91995 0.92727 0.85139 0.89617 0.92129 0.91299 0.95559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.59 60.07 0.58 0.82 16 2 N -0.54 -6.44 4.91 -242.97 -1.19 -7.63 16 3 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 4 C -0.11 -1.54 4.68 -26.65 -0.12 -1.67 16 5 C -0.08 -1.12 2.14 -90.50 -0.19 -1.31 16 6 C 0.09 1.58 2.24 -67.73 -0.15 1.43 16 7 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 8 C -0.14 -2.78 4.26 -26.65 -0.11 -2.89 16 9 C 0.05 1.20 2.03 -91.65 -0.19 1.01 16 10 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 11 C -0.52 -14.17 8.48 -34.44 -0.29 -14.46 16 12 H 0.05 1.44 7.77 -52.48 -0.41 1.03 16 13 C 0.06 1.78 5.23 -17.82 -0.09 1.69 16 14 N -0.89 -25.63 12.20 55.43 0.68 -24.95 16 15 Si 0.88 21.41 29.55 -169.99 -5.02 16.38 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.14 -3.14 5.17 -26.65 -0.14 -3.28 16 20 C 0.05 1.04 6.55 -3.84 -0.03 1.01 16 21 N -0.68 -11.48 5.66 -106.76 -0.60 -12.09 16 22 C -0.10 -1.35 5.25 -26.65 -0.14 -1.49 16 23 C 0.06 0.64 5.46 -3.84 -0.02 0.62 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.07 1.05 6.49 -51.93 -0.34 0.71 16 30 H 0.07 1.00 6.56 -51.93 -0.34 0.66 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.00 6.46 -51.92 -0.34 0.66 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.07 1.88 7.00 -51.93 -0.36 1.51 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.33 5.43 6.83 -39.29 -0.27 5.17 16 40 H 0.09 1.23 7.54 -51.93 -0.39 0.84 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -27.91 319.10 -10.17 -38.08 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.91 Total: 3.24 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.92 Total: -17.84 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -1.12 Total: -44.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.91 -10.17 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.785 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds