Wall clock time and date at job start Mon Mar 30 2020 03:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46852 * 110.99645 * 2 1 4 4 C 1.53033 * 109.51973 * 174.16029 * 3 2 1 5 5 C 1.53118 * 109.27820 * 59.18509 * 4 3 2 6 6 C 1.52998 * 109.52294 * 182.44163 * 5 4 3 7 7 H 1.09007 * 109.46378 * 179.70385 * 6 5 4 8 8 C 1.53037 * 109.46160 * 299.67575 * 6 5 4 9 9 C 1.53115 * 109.28341 * 179.19516 * 8 6 5 10 10 H 1.09005 * 109.52175 * 62.31383 * 9 8 6 11 11 C 1.50699 * 109.52930 * 182.44179 * 9 8 6 12 12 H 1.08005 * 119.99590 * 5.43521 * 11 9 8 13 13 C 1.37870 * 120.00608 * 185.43304 * 11 9 8 14 14 N 1.31518 * 119.99845 * 9.55059 * 13 11 9 15 15 Si 1.86798 * 120.00275 * 189.55249 * 13 11 9 16 16 H 1.48502 * 109.46959 * 94.99072 * 15 13 11 17 17 H 1.48501 * 109.47104 * 214.98798 * 15 13 11 18 18 H 1.48496 * 109.46993 * 334.98872 * 15 13 11 19 19 C 1.53121 * 109.15994 * 302.35245 * 9 8 6 20 20 C 1.53032 * 109.28043 * 57.65202 * 19 9 8 21 21 N 1.46841 * 109.46788 * 59.73388 * 6 5 4 22 22 C 1.53123 * 109.15698 * 302.34052 * 5 4 3 23 23 C 1.46844 * 110.99794 * 235.79312 * 2 1 3 24 24 H 1.09004 * 109.46769 * 184.21177 * 1 2 3 25 25 H 1.09000 * 109.47444 * 64.20721 * 1 2 3 26 26 H 1.09000 * 109.47292 * 304.20193 * 1 2 3 27 27 H 1.08992 * 109.46555 * 294.18213 * 3 2 1 28 28 H 1.08997 * 109.45776 * 54.14846 * 3 2 1 29 29 H 1.08997 * 109.50715 * 299.23957 * 4 3 2 30 30 H 1.09000 * 109.50185 * 179.11792 * 4 3 2 31 31 H 1.08999 * 109.57762 * 62.27631 * 5 4 3 32 32 H 1.08998 * 109.50738 * 299.14397 * 8 6 5 33 33 H 1.09010 * 109.50012 * 59.25761 * 8 6 5 34 34 H 0.96999 * 120.00430 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.50205 * 177.59096 * 19 9 8 36 36 H 1.08997 * 109.49955 * 297.70742 * 19 9 8 37 37 H 1.08997 * 109.46667 * 60.83581 * 20 19 9 38 38 H 1.09004 * 109.45964 * 180.81810 * 20 19 9 39 39 H 1.00905 * 110.99778 * 302.33501 * 21 6 5 40 40 H 1.09000 * 109.50420 * 297.70938 * 22 5 4 41 41 H 1.09002 * 109.50327 * 177.59669 * 22 5 4 42 42 H 1.08997 * 109.46546 * 305.85009 * 23 2 1 43 43 H 1.08997 * 109.46356 * 65.82069 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 0.1468 5 6 4.1187 0.5372 -1.0144 6 6 5.6360 0.4451 -0.8406 7 1 6.0620 -0.1270 -1.6649 8 6 6.2349 1.8534 -0.8343 9 6 7.7506 1.7575 -0.6400 10 1 8.1914 1.2148 -1.4763 11 6 8.3386 3.1434 -0.5730 12 1 7.6889 4.0061 -0.5717 13 6 9.7059 3.3101 -0.5131 14 7 10.5027 2.2811 -0.7029 15 14 10.4267 4.9973 -0.1625 16 1 10.7035 5.1250 1.2909 17 1 11.6910 5.1634 -0.9236 18 1 9.4588 6.0448 -0.5761 19 6 8.0438 1.0135 0.6658 20 6 7.3926 -0.3705 0.6160 21 7 5.9433 -0.2245 0.4296 22 6 3.5181 -0.8713 -1.0209 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3633 -1.0249 0.0755 25 1 -0.3634 0.4471 -0.9253 26 1 -0.3634 0.5777 0.8499 27 1 1.7323 1.8609 -0.9374 28 1 1.5633 1.9257 0.8330 29 1 3.7813 0.8568 1.0906 30 1 3.9098 2.3513 0.1310 31 1 3.8895 1.0352 -1.9565 32 1 6.0200 2.3445 -1.7834 33 1 5.7992 2.4305 -0.0185 34 1 11.4647 2.3983 -0.6612 35 1 9.1213 0.9044 0.7884 36 1 7.6366 1.5773 1.5051 37 1 7.8101 -0.9387 -0.2152 38 1 7.5872 -0.8973 1.5502 39 1 5.5264 0.2657 1.2069 40 1 3.7814 -1.3835 -0.0955 41 1 3.9098 -1.4301 -1.8709 42 1 1.5635 -1.7715 -1.1243 43 1 1.7324 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:19 Heat of formation + Delta-G solvation = -36.857475 kcal Electronic energy + Delta-G solvation = -19742.065246 eV Core-core repulsion = 17012.852681 eV Total energy + Delta-G solvation = -2729.212564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76250 -38.88876 -35.60810 -34.33917 -32.22833 -31.69391 -30.84948 -27.42351 -26.97663 -24.51640 -23.96073 -23.44126 -21.97624 -20.90706 -20.08385 -18.37513 -16.98255 -16.49019 -16.20346 -15.91014 -15.83155 -15.32993 -15.09243 -14.88763 -14.58669 -14.08356 -13.93741 -13.72940 -13.38821 -13.22626 -12.97377 -12.87296 -12.74125 -12.60524 -12.36210 -12.09899 -11.98380 -11.94028 -11.67979 -11.31915 -11.30905 -11.01942 -10.96513 -10.63264 -10.45141 -9.19659 -9.06846 -8.13370 -6.24143 1.36571 1.38148 1.47942 2.40242 3.09318 3.14234 3.50184 3.81105 3.93227 4.04369 4.24938 4.30994 4.42908 4.44619 4.57655 4.62474 4.63618 4.70190 4.71599 4.73997 4.78847 4.86577 4.90446 4.98889 5.05435 5.06236 5.14816 5.16354 5.24948 5.33302 5.34603 5.38504 5.50237 5.60958 5.69441 5.94654 5.96197 6.21225 6.24833 6.30374 6.35281 6.65194 6.88931 7.42868 8.92806 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038140 B = 0.004942 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.963326 B = 5664.168190 C = 6062.661132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.061 3.939 4 C -0.111 4.111 5 C -0.071 4.071 6 C 0.101 3.899 7 H 0.058 0.942 8 C -0.126 4.126 9 C 0.044 3.956 10 H -0.009 1.009 11 C -0.536 4.536 12 H 0.048 0.952 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.948 3.052 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.128 4.128 20 C 0.066 3.934 21 N -0.663 5.663 22 C -0.097 4.097 23 C 0.059 3.941 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.260 0.740 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.339 0.661 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.646 -5.172 1.505 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.066 4.066 4 C -0.148 4.148 5 C -0.090 4.090 6 C -0.010 4.010 7 H 0.076 0.924 8 C -0.165 4.165 9 C 0.026 3.974 10 H 0.009 0.991 11 C -0.574 4.574 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.557 5.557 15 Si 0.774 3.226 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.193 1.193 19 C -0.167 4.167 20 C -0.063 4.063 21 N -0.293 5.293 22 C -0.135 4.135 23 C -0.069 4.069 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.157 0.843 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -17.401 -6.097 1.664 18.513 hybrid contribution 1.134 2.371 -0.597 2.695 sum -16.266 -3.726 1.067 16.722 Atomic orbital electron populations 1.22392 0.86404 1.02809 1.00672 1.61934 1.08377 1.13765 1.43800 1.22044 0.95050 0.89158 1.00391 1.21638 0.94492 0.99759 0.98958 1.21134 0.92538 0.96992 0.98325 1.21466 0.94958 0.92075 0.92464 0.92394 1.22218 0.96650 0.97526 1.00114 1.18638 0.91562 0.94203 0.93036 0.99079 1.21568 0.91886 0.93430 1.50506 0.93394 1.25717 0.97732 1.00000 0.94923 1.70092 1.03605 1.32067 1.49902 0.85698 0.77879 0.80736 0.78304 1.20112 1.20974 1.19312 1.22031 0.99990 0.96257 0.98461 1.21914 0.87920 0.95495 1.01009 1.60887 1.10219 1.53888 1.04320 1.21464 0.93446 0.95838 1.02785 1.22113 0.95572 0.98328 0.90903 0.90610 0.95705 0.90823 0.95308 0.90095 0.91118 0.92071 0.91954 0.94143 0.92789 0.93094 0.94298 0.94775 0.92976 0.90448 0.84253 0.90646 0.91903 0.89930 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.63 16 2 N -0.55 -11.65 4.91 -922.61 -4.53 -16.18 16 3 C 0.06 1.33 5.46 86.32 0.47 1.80 16 4 C -0.11 -2.79 4.68 30.64 0.14 -2.65 16 5 C -0.07 -1.92 2.14 -10.71 -0.02 -1.95 16 6 C 0.10 3.40 2.24 44.94 0.10 3.50 16 7 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 8 C -0.13 -5.14 4.26 30.65 0.13 -5.00 16 9 C 0.04 2.23 2.03 -11.46 -0.02 2.21 16 10 H -0.01 -0.52 8.09 -2.38 -0.02 -0.54 16 11 C -0.54 -30.10 8.48 25.60 0.22 -29.89 16 12 H 0.05 2.67 7.77 -2.91 -0.02 2.64 16 13 C 0.02 0.86 5.23 84.65 0.44 1.30 16 14 N -0.92 -54.35 12.20 21.44 0.26 -54.08 16 15 Si 0.95 44.30 29.55 68.60 2.03 46.33 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 C -0.13 -5.93 5.17 30.65 0.16 -5.77 16 20 C 0.07 2.49 6.55 86.32 0.57 3.05 16 21 N -0.66 -21.66 5.66 -491.69 -2.78 -24.44 16 22 C -0.10 -2.35 5.25 30.65 0.16 -2.19 16 23 C 0.06 1.21 5.46 86.33 0.47 1.69 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 27 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 29 H 0.07 1.85 6.49 -2.39 -0.02 1.83 16 30 H 0.06 1.65 6.56 -2.39 -0.02 1.63 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 2.15 6.46 -2.38 -0.02 2.13 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.04 2.05 7.00 -2.39 -0.02 2.04 16 36 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.34 10.53 6.83 -89.69 -0.61 9.91 16 40 H 0.07 2.00 7.54 -2.39 -0.02 1.99 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 43 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -60.40 319.10 -0.64 -61.04 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.34 Total: 19.60 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.04 Total: -32.27 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -7.05 Total: -94.71 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -60.40 -0.64 -61.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.185 kcal (2) G-P(sol) polarization free energy of solvation -60.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds