Wall clock time and date at job start Mon Mar 30 2020 03:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46846 * 110.99656 * 2 1 4 4 C 1.53030 * 109.52152 * 185.83424 * 3 2 1 5 5 C 1.53116 * 109.28481 * 300.82308 * 4 3 2 6 6 C 1.52997 * 109.52700 * 177.55751 * 5 4 3 7 7 H 1.09002 * 109.46350 * 300.12597 * 6 5 4 8 8 C 1.53036 * 109.46363 * 180.14666 * 6 5 4 9 9 C 1.53119 * 109.27980 * 180.81612 * 8 6 5 10 10 H 1.08998 * 109.52169 * 297.74966 * 9 8 6 11 11 C 1.50697 * 109.52171 * 177.62594 * 9 8 6 12 12 H 1.07997 * 120.00136 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99768 * 180.02562 * 11 9 8 14 14 N 1.31521 * 119.99908 * 180.02562 * 13 11 9 15 15 Si 1.86794 * 120.00263 * 359.97438 * 13 11 9 16 16 H 1.48496 * 109.47132 * 90.00096 * 15 13 11 17 17 H 1.48504 * 109.47445 * 210.00545 * 15 13 11 18 18 H 1.48506 * 109.47130 * 330.00486 * 15 13 11 19 19 C 1.53111 * 109.15908 * 57.65410 * 9 8 6 20 20 C 1.53033 * 109.28170 * 302.34373 * 19 9 8 21 21 N 1.46848 * 109.45343 * 60.09859 * 6 5 4 22 22 C 1.53119 * 109.20976 * 57.61786 * 5 4 3 23 23 C 1.46841 * 110.99713 * 124.20791 * 2 1 3 24 24 H 1.09001 * 109.46964 * 60.00196 * 1 2 3 25 25 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47625 * 300.00150 * 1 2 3 27 27 H 1.09007 * 109.46090 * 65.81894 * 3 2 1 28 28 H 1.09004 * 109.46375 * 305.85594 * 3 2 1 29 29 H 1.09002 * 109.50230 * 180.87886 * 4 3 2 30 30 H 1.09007 * 109.53603 * 60.78696 * 4 3 2 31 31 H 1.09003 * 109.51780 * 297.68601 * 5 4 3 32 32 H 1.08997 * 109.50573 * 300.76155 * 8 6 5 33 33 H 1.08997 * 109.50131 * 60.83298 * 8 6 5 34 34 H 0.96996 * 120.00047 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.50613 * 62.29176 * 19 9 8 36 36 H 1.09004 * 109.50472 * 182.40707 * 19 9 8 37 37 H 1.09004 * 109.46335 * 179.19340 * 20 19 9 38 38 H 1.08992 * 109.46726 * 299.17966 * 20 19 9 39 39 H 1.00902 * 110.99851 * 305.85225 * 21 6 5 40 40 H 1.09001 * 109.50207 * 62.32789 * 22 5 4 41 41 H 1.09000 * 109.50501 * 182.43901 * 22 5 4 42 42 H 1.09007 * 109.46713 * 294.18128 * 23 2 1 43 43 H 1.09000 * 109.46839 * 54.15733 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 -0.1466 5 6 4.1188 0.5371 1.0145 6 6 5.6361 0.4451 0.8407 7 1 5.8641 -0.0541 -0.1011 8 6 6.2345 -0.3550 1.9999 9 6 7.7549 -0.4271 1.8326 10 1 7.9951 -0.9527 0.9085 11 6 8.3557 -1.1639 3.0019 12 1 7.7180 -1.5429 3.7867 13 6 9.7197 -1.3531 3.0701 14 7 10.2441 -1.9966 4.0903 15 14 10.8228 -0.6969 1.7131 16 1 11.2482 0.6862 2.0464 17 1 12.0203 -1.5658 1.5848 18 1 10.0769 -0.6894 0.4290 19 6 8.3220 0.9939 1.7753 20 6 7.6632 1.7549 0.6227 21 7 6.2099 1.7968 0.8294 22 6 3.5183 -0.8714 1.0225 23 6 1.9952 -0.7707 1.1337 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7323 1.8609 0.9376 28 1 1.5633 1.9258 -0.8330 29 1 3.9098 2.3513 -0.1309 30 1 3.7820 0.8572 -1.0906 31 1 3.8895 1.0362 1.9560 32 1 5.9950 0.1362 2.9430 33 1 5.8195 -1.3628 1.9989 34 1 11.2037 -2.1294 4.1386 35 1 8.1155 1.5064 2.7149 36 1 9.3991 0.9497 1.6135 37 1 8.0544 2.7717 0.5881 38 1 7.8815 1.2496 -0.3180 39 1 5.7620 2.3740 0.1335 40 1 3.7816 -1.3846 0.0976 41 1 3.9101 -1.4293 1.8730 42 1 1.7323 -0.2708 2.0661 43 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259751483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:22 Heat of formation + Delta-G solvation = -9.316328 kcal Electronic energy + Delta-G solvation = -19710.482215 eV Core-core repulsion = 16982.463925 eV Total energy + Delta-G solvation = -2728.018290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.55735 -37.71480 -34.24569 -32.87083 -31.28839 -30.57011 -29.75673 -26.37818 -25.47107 -23.35583 -23.00912 -21.50664 -20.71567 -19.53658 -18.77587 -16.61121 -16.35338 -15.59626 -15.14781 -14.75154 -14.45011 -14.24654 -13.76936 -13.49266 -13.24502 -12.89266 -12.69943 -12.50548 -12.41125 -12.13336 -11.96657 -11.63703 -11.60984 -11.16544 -10.95946 -10.69617 -10.47689 -10.33388 -10.25079 -9.92366 -9.79433 -9.55098 -8.98723 -8.87224 -8.47725 -8.42901 -7.95199 -6.02653 -4.00589 3.29660 3.39693 3.42110 3.84621 4.44955 4.52934 4.81877 4.82952 4.96647 5.14641 5.27084 5.29302 5.29976 5.41854 5.46877 5.59144 5.67044 5.69144 5.75117 5.80851 5.84160 5.89272 5.94282 6.00138 6.13059 6.20813 6.23174 6.35663 6.41966 6.48556 6.62158 6.81872 6.89258 6.97480 7.00102 7.02460 7.27903 7.57851 7.62850 7.80243 7.90317 8.58601 9.02027 9.60734 11.10949 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038704 B = 0.005210 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.263152 B = 5372.551598 C = 5877.914220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.058 3.942 4 C -0.114 4.114 5 C -0.080 4.080 6 C 0.093 3.907 7 H 0.031 0.969 8 C -0.089 4.089 9 C 0.013 3.987 10 H 0.020 0.980 11 C -0.508 4.508 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.299 1.299 18 H -0.268 1.268 19 C -0.117 4.117 20 C 0.058 3.942 21 N -0.682 5.682 22 C -0.113 4.113 23 C 0.057 3.943 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.328 0.672 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.058 6.671 -9.329 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.099 4.099 6 C -0.017 4.017 7 H 0.049 0.951 8 C -0.127 4.127 9 C -0.006 4.006 10 H 0.038 0.962 11 C -0.546 4.546 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.226 1.226 18 H -0.193 1.193 19 C -0.155 4.155 20 C -0.071 4.071 21 N -0.314 5.314 22 C -0.152 4.152 23 C -0.071 4.071 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.675 6.407 -8.990 19.173 hybrid contribution 0.550 0.562 -0.858 1.164 sum -15.126 6.969 -9.849 19.348 Atomic orbital electron populations 1.22340 0.87729 1.01892 1.00354 1.61942 1.07151 1.13985 1.43875 1.22068 0.95926 0.88870 1.00103 1.21668 0.93831 1.00374 0.99319 1.21222 0.94316 0.95701 0.98635 1.21605 0.92300 0.89200 0.98546 0.95133 1.21551 0.96905 0.97776 0.96494 1.19178 0.92094 0.91810 0.97516 0.96205 1.21063 0.92490 1.34702 1.06359 0.90926 1.25024 0.98136 0.94786 0.95365 1.69906 1.11993 1.42175 1.30188 0.86839 0.79844 0.78045 0.83423 1.20623 1.22643 1.19293 1.22004 0.97706 0.98513 0.97233 1.21994 0.87860 0.99418 0.97856 1.60344 1.04130 1.12752 1.54173 1.21688 0.93251 0.97132 1.03081 1.22118 0.96171 0.97785 0.91023 0.91615 0.91496 0.95890 0.94963 0.91196 0.91317 0.91528 0.90795 0.92053 0.92348 0.92788 0.91417 0.93643 0.92105 0.96202 0.85429 0.91251 0.90416 0.94963 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.59 60.07 0.58 0.80 16 2 N -0.54 -6.07 4.91 -242.95 -1.19 -7.26 16 3 C 0.06 0.62 5.46 -3.84 -0.02 0.60 16 4 C -0.11 -1.32 4.98 -26.66 -0.13 -1.45 16 5 C -0.08 -1.08 2.02 -90.50 -0.18 -1.27 16 6 C 0.09 1.53 2.09 -67.72 -0.14 1.39 16 7 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 8 C -0.09 -1.79 4.22 -26.65 -0.11 -1.91 16 9 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 10 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 11 C -0.51 -14.42 9.15 -34.44 -0.32 -14.74 16 12 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 13 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 14 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 15 Si 0.89 22.37 24.36 -169.99 -4.14 18.23 16 16 H -0.28 -6.84 6.89 56.52 0.39 -6.45 16 17 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 19 C -0.12 -2.58 4.84 -26.66 -0.13 -2.71 16 20 C 0.06 1.04 6.55 -3.83 -0.03 1.01 16 21 N -0.68 -11.04 6.49 -106.76 -0.69 -11.73 16 22 C -0.11 -1.47 4.96 -26.65 -0.13 -1.61 16 23 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.55 8.09 -51.93 -0.42 0.12 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.07 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.14 6.54 -51.93 -0.34 0.80 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.05 1.06 3.38 -51.93 -0.18 0.88 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.33 4.44 6.84 -39.29 -0.27 4.17 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.06 6.60 -51.93 -0.34 0.72 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -30.25 312.30 -9.22 -39.47 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.78 Total: 1.06 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.89 Total: -17.21 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -1.11 Total: -46.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.25 -9.22 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.154 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds