Wall clock time and date at job start Mon Mar 30 2020 03:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46846 * 110.99656 * 2 1 4 4 C 1.53030 * 109.52152 * 185.83424 * 3 2 1 5 5 C 1.53116 * 109.28481 * 300.82308 * 4 3 2 6 6 C 1.52997 * 109.52700 * 177.55751 * 5 4 3 7 7 H 1.09002 * 109.46350 * 300.12597 * 6 5 4 8 8 C 1.53036 * 109.46363 * 180.14666 * 6 5 4 9 9 C 1.53119 * 109.27980 * 180.81612 * 8 6 5 10 10 H 1.08998 * 109.52169 * 297.74966 * 9 8 6 11 11 C 1.50697 * 109.52171 * 177.62594 * 9 8 6 12 12 H 1.07997 * 120.00136 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99768 * 180.02562 * 11 9 8 14 14 N 1.31521 * 119.99908 * 180.02562 * 13 11 9 15 15 Si 1.86794 * 120.00263 * 359.97438 * 13 11 9 16 16 H 1.48496 * 109.47132 * 90.00096 * 15 13 11 17 17 H 1.48504 * 109.47445 * 210.00545 * 15 13 11 18 18 H 1.48506 * 109.47130 * 330.00486 * 15 13 11 19 19 C 1.53111 * 109.15908 * 57.65410 * 9 8 6 20 20 C 1.53033 * 109.28170 * 302.34373 * 19 9 8 21 21 N 1.46848 * 109.45343 * 60.09859 * 6 5 4 22 22 C 1.53119 * 109.20976 * 57.61786 * 5 4 3 23 23 C 1.46841 * 110.99713 * 124.20791 * 2 1 3 24 24 H 1.09001 * 109.46964 * 60.00196 * 1 2 3 25 25 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47625 * 300.00150 * 1 2 3 27 27 H 1.09007 * 109.46090 * 65.81894 * 3 2 1 28 28 H 1.09004 * 109.46375 * 305.85594 * 3 2 1 29 29 H 1.09002 * 109.50230 * 180.87886 * 4 3 2 30 30 H 1.09007 * 109.53603 * 60.78696 * 4 3 2 31 31 H 1.09003 * 109.51780 * 297.68601 * 5 4 3 32 32 H 1.08997 * 109.50573 * 300.76155 * 8 6 5 33 33 H 1.08997 * 109.50131 * 60.83298 * 8 6 5 34 34 H 0.96996 * 120.00047 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.50613 * 62.29176 * 19 9 8 36 36 H 1.09004 * 109.50472 * 182.40707 * 19 9 8 37 37 H 1.09004 * 109.46335 * 179.19340 * 20 19 9 38 38 H 1.08992 * 109.46726 * 299.17966 * 20 19 9 39 39 H 1.00902 * 110.99851 * 305.85225 * 21 6 5 40 40 H 1.09001 * 109.50207 * 62.32789 * 22 5 4 41 41 H 1.09000 * 109.50501 * 182.43901 * 22 5 4 42 42 H 1.09007 * 109.46713 * 294.18128 * 23 2 1 43 43 H 1.09000 * 109.46839 * 54.15733 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3342 -0.1466 5 6 4.1188 0.5371 1.0145 6 6 5.6361 0.4451 0.8407 7 1 5.8641 -0.0541 -0.1011 8 6 6.2345 -0.3550 1.9999 9 6 7.7549 -0.4271 1.8326 10 1 7.9951 -0.9527 0.9085 11 6 8.3557 -1.1639 3.0019 12 1 7.7180 -1.5429 3.7867 13 6 9.7197 -1.3531 3.0701 14 7 10.2441 -1.9966 4.0903 15 14 10.8228 -0.6969 1.7131 16 1 11.2482 0.6862 2.0464 17 1 12.0203 -1.5658 1.5848 18 1 10.0769 -0.6894 0.4290 19 6 8.3220 0.9939 1.7753 20 6 7.6632 1.7549 0.6227 21 7 6.2099 1.7968 0.8294 22 6 3.5183 -0.8714 1.0225 23 6 1.9952 -0.7707 1.1337 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7323 1.8609 0.9376 28 1 1.5633 1.9258 -0.8330 29 1 3.9098 2.3513 -0.1309 30 1 3.7820 0.8572 -1.0906 31 1 3.8895 1.0362 1.9560 32 1 5.9950 0.1362 2.9430 33 1 5.8195 -1.3628 1.9989 34 1 11.2037 -2.1294 4.1386 35 1 8.1155 1.5064 2.7149 36 1 9.3991 0.9497 1.6135 37 1 8.0544 2.7717 0.5881 38 1 7.8815 1.2496 -0.3180 39 1 5.7620 2.3740 0.1335 40 1 3.7816 -1.3846 0.0976 41 1 3.9101 -1.4293 1.8730 42 1 1.7323 -0.2708 2.0661 43 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259751483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:22 Heat of formation + Delta-G solvation = -31.136120 kcal Electronic energy + Delta-G solvation = -19711.428392 eV Core-core repulsion = 16982.463925 eV Total energy + Delta-G solvation = -2728.964468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71541 -38.98804 -35.70358 -34.51946 -32.99797 -31.70506 -31.05733 -27.61311 -27.16833 -24.47641 -24.16368 -22.96325 -22.08266 -20.65979 -20.37633 -18.74225 -17.74006 -16.63377 -16.35391 -15.99818 -15.75351 -15.50712 -15.13877 -14.94018 -14.59791 -14.44517 -14.20241 -13.79583 -13.50533 -13.49488 -13.18115 -13.02639 -12.81731 -12.52446 -12.17837 -12.09423 -12.08821 -11.92534 -11.52409 -11.46274 -11.31741 -11.21361 -10.92588 -10.60631 -10.57283 -9.29638 -9.25034 -8.30237 -6.33241 1.28397 1.33521 1.44382 2.31785 3.04074 3.05109 3.25114 3.78293 3.85067 3.98356 4.21608 4.24205 4.28860 4.31764 4.38534 4.43593 4.54288 4.60777 4.63260 4.65969 4.73524 4.79369 4.85694 4.91737 4.92302 4.95258 5.01276 5.04018 5.10418 5.18190 5.20211 5.28988 5.36953 5.49025 5.57118 5.68210 5.78770 6.14939 6.15716 6.20964 6.32462 6.67050 6.74429 7.31941 8.87041 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038704 B = 0.005210 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.263152 B = 5372.551598 C = 5877.914220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.059 3.941 4 C -0.107 4.107 5 C -0.072 4.072 6 C 0.103 3.897 7 H 0.030 0.970 8 C -0.084 4.084 9 C 0.011 3.989 10 H 0.014 0.986 11 C -0.516 4.516 12 H 0.030 0.970 13 C 0.009 3.991 14 N -0.952 5.952 15 Si 0.953 3.047 16 H -0.265 1.265 17 H -0.299 1.299 18 H -0.250 1.250 19 C -0.116 4.116 20 C 0.064 3.936 21 N -0.683 5.683 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.265 0.735 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.350 0.650 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 8.638 -11.949 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.091 4.091 6 C -0.007 4.007 7 H 0.048 0.952 8 C -0.122 4.122 9 C -0.008 4.008 10 H 0.032 0.968 11 C -0.555 4.555 12 H 0.048 0.952 13 C -0.187 4.187 14 N -0.593 5.593 15 Si 0.780 3.220 16 H -0.191 1.191 17 H -0.226 1.226 18 H -0.174 1.174 19 C -0.154 4.154 20 C -0.065 4.065 21 N -0.317 5.317 22 C -0.151 4.151 23 C -0.067 4.067 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.171 0.829 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.838 8.396 -11.628 22.119 hybrid contribution 0.836 -0.124 0.064 0.848 sum -16.002 8.272 -11.564 21.406 Atomic orbital electron populations 1.22395 0.86268 1.02574 1.01069 1.61958 1.08559 1.14221 1.43400 1.22087 0.95174 0.88836 1.00780 1.21614 0.94552 1.00472 0.97843 1.21118 0.92274 0.96338 0.99344 1.21442 0.93940 0.88929 0.96375 0.95212 1.21432 0.94794 0.98370 0.97570 1.19156 0.94332 0.92491 0.94834 0.96759 1.21401 0.92424 1.34781 1.06845 0.95210 1.25914 0.99813 0.95092 0.97919 1.70062 1.12517 1.44115 1.32629 0.85779 0.77601 0.77858 0.80790 1.19058 1.22650 1.17378 1.21878 0.97482 0.97428 0.98624 1.21891 0.88502 1.00311 0.95829 1.60242 1.03475 1.12637 1.55298 1.21641 0.94655 0.96645 1.02130 1.22036 0.94843 0.98486 0.91301 0.90381 0.90936 0.95624 0.95112 0.89430 0.90013 0.91668 0.91734 0.93752 0.92809 0.92629 0.92922 0.94531 0.89310 0.95537 0.82920 0.91717 0.91950 0.95203 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.59 127.69 1.22 1.60 16 2 N -0.56 -11.03 4.91 -922.56 -4.53 -15.56 16 3 C 0.06 1.08 5.46 86.32 0.47 1.55 16 4 C -0.11 -2.15 4.98 30.64 0.15 -2.00 16 5 C -0.07 -1.84 2.02 -10.72 -0.02 -1.86 16 6 C 0.10 3.22 2.09 44.94 0.09 3.32 16 7 H 0.03 0.96 8.14 -2.39 -0.02 0.95 16 8 C -0.08 -3.40 4.22 30.65 0.13 -3.27 16 9 C 0.01 0.51 1.75 -11.46 -0.02 0.49 16 10 H 0.01 0.70 7.19 -2.39 -0.02 0.68 16 11 C -0.52 -30.47 9.15 25.60 0.23 -30.23 16 12 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 13 C 0.01 0.54 5.45 84.65 0.46 1.00 16 14 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 15 Si 0.95 46.21 24.36 68.60 1.67 47.88 16 16 H -0.26 -12.15 6.89 99.48 0.69 -11.46 16 17 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 18 H -0.25 -11.28 6.53 99.48 0.65 -10.63 16 19 C -0.12 -4.98 4.84 30.64 0.15 -4.83 16 20 C 0.06 2.09 6.55 86.32 0.57 2.65 16 21 N -0.68 -20.12 6.49 -491.69 -3.19 -23.32 16 22 C -0.11 -2.85 4.96 30.65 0.15 -2.69 16 23 C 0.06 1.32 5.46 86.33 0.47 1.79 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 26 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.09 1.33 8.12 -2.38 -0.02 1.31 16 29 H 0.08 1.43 6.66 -2.39 -0.02 1.42 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 2.18 6.54 -2.39 -0.02 2.17 16 34 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.04 1.62 3.38 -2.39 -0.01 1.61 16 37 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.35 8.04 6.84 -89.69 -0.61 7.42 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 1.74 6.60 -2.39 -0.02 1.72 16 42 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 Total: -1.00 -66.95 312.30 -1.42 -68.37 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.27 Total: 15.95 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 4.06 Total: -32.48 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -7.42 Total: -99.71 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -66.95 -1.42 -68.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.229 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds