Wall clock time and date at job start Mon Mar 30 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46930 * 110.98559 * 2 1 4 4 C 1.53043 * 109.47508 * 174.17927 * 3 2 1 5 5 C 1.53117 * 109.31184 * 59.15903 * 4 3 2 6 6 H 1.08998 * 109.52334 * 62.23096 * 5 4 3 7 7 C 1.53003 * 109.51789 * 182.42000 * 5 4 3 8 8 C 1.50697 * 109.47053 * 294.32739 * 7 5 4 9 9 H 1.07999 * 120.00351 * 0.02562 * 8 7 5 10 10 C 1.37879 * 119.99988 * 180.02562 * 8 7 5 11 11 N 1.31506 * 120.00306 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99882 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47104 * 90.00284 * 12 10 8 14 14 H 1.48500 * 109.46896 * 210.00042 * 12 10 8 15 15 H 1.48501 * 109.47020 * 330.00025 * 12 10 8 16 16 C 1.53118 * 109.15782 * 302.32164 * 5 4 3 17 17 H 1.08996 * 109.50432 * 297.67286 * 16 5 4 18 18 N 1.46902 * 109.50122 * 177.59828 * 16 5 4 19 19 C 1.48537 * 111.00113 * 184.11165 * 18 16 5 20 20 C 1.54934 * 103.22564 * 159.71982 * 19 18 16 21 21 C 1.54589 * 102.92537 * 322.58456 * 20 19 18 22 22 C 1.47903 * 111.00047 * 301.50971 * 18 16 5 23 23 C 1.46846 * 111.00368 * 235.76652 * 2 1 3 24 24 H 1.08997 * 109.47131 * 184.23344 * 1 2 3 25 25 H 1.09001 * 109.47094 * 304.23345 * 1 2 3 26 26 H 1.08997 * 109.46983 * 64.23444 * 1 2 3 27 27 H 1.08996 * 109.51940 * 54.15742 * 3 2 1 28 28 H 1.08995 * 109.44917 * 294.15512 * 3 2 1 29 29 H 1.09000 * 109.50422 * 299.19310 * 4 3 2 30 30 H 1.09002 * 109.49796 * 179.11733 * 4 3 2 31 31 H 1.08998 * 109.47656 * 54.33232 * 7 5 4 32 32 H 1.09005 * 109.46514 * 174.32832 * 7 5 4 33 33 H 0.97003 * 120.00708 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.66371 * 278.15890 * 19 18 16 35 35 H 1.08999 * 110.66831 * 41.28098 * 19 18 16 36 36 H 1.09005 * 110.72326 * 204.22387 * 20 19 18 37 37 H 1.09005 * 110.87668 * 81.02070 * 20 19 18 38 38 H 1.08998 * 110.31024 * 263.04153 * 21 20 19 39 39 H 1.09003 * 110.39316 * 140.91551 * 21 20 19 40 40 H 1.08998 * 109.91214 * 333.50635 * 22 18 16 41 41 H 1.08989 * 109.91795 * 94.60310 * 22 18 16 42 42 H 1.08997 * 109.46133 * 65.82043 * 23 2 1 43 43 H 1.09001 * 109.45034 * 305.85695 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3718 0.0000 4 6 3.5182 1.3342 0.1463 5 6 4.1188 0.5366 -1.0145 6 1 3.8888 1.0347 -1.9563 7 6 5.6361 0.4446 -0.8405 8 6 6.2404 1.8194 -0.9661 9 1 5.6057 2.6734 -1.1511 10 6 7.6036 1.9870 -0.8449 11 7 8.1309 3.1867 -0.9540 12 14 8.7015 0.5097 -0.5255 13 1 9.1385 -0.0713 -1.8203 14 1 9.8922 0.9369 0.2523 15 1 7.9466 -0.5106 0.2454 16 6 3.5181 -0.8719 -1.0204 17 1 3.7820 -1.3839 -0.0950 18 7 4.0462 -1.6254 -2.1655 19 6 3.4104 -2.9645 -2.2604 20 6 3.6607 -3.3721 -3.7341 21 6 3.4975 -2.0363 -4.4948 22 6 3.7359 -0.9406 -3.4392 23 6 1.9953 -0.7712 -1.1334 24 1 -0.3633 -1.0248 0.0759 25 1 -0.3633 0.5781 0.8496 26 1 -0.3633 0.4467 -0.9255 27 1 1.5640 1.9273 0.8328 28 1 1.7325 1.8613 -0.9378 29 1 3.7814 0.8571 1.0904 30 1 3.9104 2.3510 0.1306 31 1 5.8649 0.0357 0.1437 32 1 6.0512 -0.2065 -1.6099 33 1 9.0899 3.3048 -0.8684 34 1 3.8908 -3.6675 -1.5798 35 1 2.3418 -2.8984 -2.0556 36 1 2.9176 -4.0977 -4.0651 37 1 4.6681 -3.7683 -3.8618 38 1 2.4907 -1.9545 -4.9043 39 1 4.2369 -1.9605 -5.2922 40 1 2.8379 -0.3334 -3.3250 41 1 4.5745 -0.3109 -3.7361 42 1 1.7325 -0.2717 -2.0658 43 1 1.5634 -1.7719 -1.1233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259760097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:02 Heat of formation + Delta-G solvation = 6.476593 kcal Electronic energy + Delta-G solvation = -20165.146157 eV Core-core repulsion = 17437.812699 eV Total energy + Delta-G solvation = -2727.333458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96857 -37.39602 -34.53051 -32.41644 -31.56184 -29.04010 -28.66527 -27.93671 -25.60101 -23.29700 -22.68751 -20.93552 -20.84215 -20.11548 -18.43425 -16.69675 -16.18480 -15.77238 -15.02092 -14.71164 -14.38658 -14.18536 -13.67004 -13.42285 -13.09449 -12.75264 -12.59657 -12.44702 -12.12344 -11.80514 -11.76665 -11.55759 -11.32609 -11.22297 -10.95341 -10.83578 -10.69779 -10.58177 -10.32871 -10.04141 -9.68714 -9.54853 -9.29532 -8.88835 -8.40917 -8.26124 -7.85617 -5.93201 -3.88928 3.41860 3.48252 3.56028 4.00196 4.38649 4.57700 4.82071 4.84904 5.06154 5.07813 5.21518 5.25809 5.40624 5.45564 5.47694 5.55878 5.58229 5.63411 5.70485 5.82023 5.88108 5.89261 5.90091 5.93861 6.01940 6.13973 6.24842 6.28134 6.35500 6.37888 6.46851 6.85486 6.97883 7.07466 7.13455 7.22744 7.30239 7.49909 7.55562 7.69463 7.94870 8.66058 9.12144 9.71340 11.20299 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.008330 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.385415 B = 3360.590033 C = 4501.401352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.053 3.947 4 C -0.103 4.103 5 C -0.063 4.063 6 H 0.058 0.942 7 C -0.001 4.001 8 C -0.512 4.512 9 H 0.069 0.931 10 C 0.065 3.935 11 N -0.909 5.909 12 Si 0.879 3.121 13 H -0.279 1.279 14 H -0.292 1.292 15 H -0.264 1.264 16 C 0.082 3.918 17 H 0.087 0.913 18 N -0.498 5.498 19 C 0.026 3.974 20 C -0.122 4.122 21 C -0.131 4.131 22 C 0.030 3.970 23 C 0.025 3.975 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.012 0.988 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.033 0.967 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 -10.665 -2.646 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.141 4.141 5 C -0.081 4.081 6 H 0.076 0.924 7 C -0.038 4.038 8 C -0.550 4.550 9 H 0.087 0.913 10 C -0.135 4.135 11 N -0.549 5.549 12 Si 0.706 3.294 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.188 1.188 16 C -0.027 4.027 17 H 0.105 0.895 18 N -0.220 5.220 19 C -0.102 4.102 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.098 4.098 23 C -0.105 4.105 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.051 0.949 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.230 -10.834 -2.127 17.232 hybrid contribution -0.555 -0.141 -0.711 0.913 sum -13.784 -10.975 -2.838 17.847 Atomic orbital electron populations 1.22335 0.88182 1.01603 1.00106 1.61929 1.06703 1.14641 1.43018 1.22266 0.97534 0.87903 0.99709 1.21587 0.91254 1.02077 0.99209 1.21100 0.98200 0.91172 0.97675 0.92372 1.19516 0.90269 0.97378 0.96668 1.21201 0.92469 0.93042 1.48282 0.91278 1.24996 0.98176 0.95436 0.94903 1.69920 1.11814 1.21626 1.51540 0.86789 0.80065 0.83814 0.78689 1.20470 1.21850 1.18848 1.22010 0.89806 0.96693 0.94212 0.89478 1.65056 1.53184 1.01779 1.02020 1.23326 0.97508 0.92406 0.96958 1.22451 1.01958 0.96835 0.94767 1.22402 1.01184 0.94954 0.98355 1.22935 1.00852 0.96534 0.89457 1.22845 0.98289 0.97600 0.91744 0.91908 0.91514 0.96216 0.91257 0.95428 0.91710 0.89959 0.97000 0.95478 0.93004 0.90325 0.93635 0.91697 0.90844 0.92181 0.91181 0.93665 0.89626 0.94897 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.59 60.06 0.58 0.88 16 2 N -0.54 -7.86 4.91 -242.90 -1.19 -9.06 16 3 C 0.05 0.83 5.47 -3.79 -0.02 0.81 16 4 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 5 C -0.06 -1.24 1.48 -90.50 -0.13 -1.38 16 6 H 0.06 1.21 6.90 -51.93 -0.36 0.85 16 7 C 0.00 -0.02 3.45 -27.88 -0.10 -0.12 16 8 C -0.51 -14.51 9.00 -34.44 -0.31 -14.82 16 9 H 0.07 2.09 7.35 -52.49 -0.39 1.71 16 10 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 11 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 12 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 16 C 0.08 1.39 1.95 -67.64 -0.13 1.26 16 17 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 18 N -0.50 -8.11 4.60 -222.41 -1.02 -9.13 16 19 C 0.03 0.34 6.37 -1.90 -0.01 0.32 16 20 C -0.12 -1.40 7.06 -24.88 -0.18 -1.58 16 21 C -0.13 -1.59 6.93 -25.37 -0.18 -1.76 16 22 C 0.03 0.46 5.11 -2.75 -0.01 0.44 16 23 C 0.02 0.36 4.07 -3.84 -0.02 0.34 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.68 7.08 -51.93 -0.37 1.32 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 32 H 0.03 0.67 6.96 -51.93 -0.36 0.31 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.56 5.54 -51.93 -0.29 0.27 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.68 5.30 -51.93 -0.28 0.41 16 41 H 0.09 1.49 8.13 -51.94 -0.42 1.07 16 42 H 0.03 0.50 6.02 -51.93 -0.31 0.18 16 43 H 0.07 0.93 6.02 -51.93 -0.31 0.62 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -30.49 315.21 -9.80 -40.29 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.69 Total: -1.25 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.74 Total: -15.84 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.44 Total: -45.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.49 -9.80 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.764 kcal (2) G-P(sol) polarization free energy of solvation -30.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds