Wall clock time and date at job start Mon Mar 30 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46930 * 110.98559 * 2 1 4 4 C 1.53043 * 109.47508 * 174.17927 * 3 2 1 5 5 C 1.53117 * 109.31184 * 59.15903 * 4 3 2 6 6 H 1.08998 * 109.52334 * 62.23096 * 5 4 3 7 7 C 1.53003 * 109.51789 * 182.42000 * 5 4 3 8 8 C 1.50697 * 109.47053 * 294.32739 * 7 5 4 9 9 H 1.07999 * 120.00351 * 0.02562 * 8 7 5 10 10 C 1.37879 * 119.99988 * 180.02562 * 8 7 5 11 11 N 1.31506 * 120.00306 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99882 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47104 * 90.00284 * 12 10 8 14 14 H 1.48500 * 109.46896 * 210.00042 * 12 10 8 15 15 H 1.48501 * 109.47020 * 330.00025 * 12 10 8 16 16 C 1.53118 * 109.15782 * 302.32164 * 5 4 3 17 17 H 1.08996 * 109.50432 * 297.67286 * 16 5 4 18 18 N 1.46902 * 109.50122 * 177.59828 * 16 5 4 19 19 C 1.48537 * 111.00113 * 184.11165 * 18 16 5 20 20 C 1.54934 * 103.22564 * 159.71982 * 19 18 16 21 21 C 1.54589 * 102.92537 * 322.58456 * 20 19 18 22 22 C 1.47903 * 111.00047 * 301.50971 * 18 16 5 23 23 C 1.46846 * 111.00368 * 235.76652 * 2 1 3 24 24 H 1.08997 * 109.47131 * 184.23344 * 1 2 3 25 25 H 1.09001 * 109.47094 * 304.23345 * 1 2 3 26 26 H 1.08997 * 109.46983 * 64.23444 * 1 2 3 27 27 H 1.08996 * 109.51940 * 54.15742 * 3 2 1 28 28 H 1.08995 * 109.44917 * 294.15512 * 3 2 1 29 29 H 1.09000 * 109.50422 * 299.19310 * 4 3 2 30 30 H 1.09002 * 109.49796 * 179.11733 * 4 3 2 31 31 H 1.08998 * 109.47656 * 54.33232 * 7 5 4 32 32 H 1.09005 * 109.46514 * 174.32832 * 7 5 4 33 33 H 0.97003 * 120.00708 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.66371 * 278.15890 * 19 18 16 35 35 H 1.08999 * 110.66831 * 41.28098 * 19 18 16 36 36 H 1.09005 * 110.72326 * 204.22387 * 20 19 18 37 37 H 1.09005 * 110.87668 * 81.02070 * 20 19 18 38 38 H 1.08998 * 110.31024 * 263.04153 * 21 20 19 39 39 H 1.09003 * 110.39316 * 140.91551 * 21 20 19 40 40 H 1.08998 * 109.91214 * 333.50635 * 22 18 16 41 41 H 1.08989 * 109.91795 * 94.60310 * 22 18 16 42 42 H 1.08997 * 109.46133 * 65.82043 * 23 2 1 43 43 H 1.09001 * 109.45034 * 305.85695 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3718 0.0000 4 6 3.5182 1.3342 0.1463 5 6 4.1188 0.5366 -1.0145 6 1 3.8888 1.0347 -1.9563 7 6 5.6361 0.4446 -0.8405 8 6 6.2404 1.8194 -0.9661 9 1 5.6057 2.6734 -1.1511 10 6 7.6036 1.9870 -0.8449 11 7 8.1309 3.1867 -0.9540 12 14 8.7015 0.5097 -0.5255 13 1 9.1385 -0.0713 -1.8203 14 1 9.8922 0.9369 0.2523 15 1 7.9466 -0.5106 0.2454 16 6 3.5181 -0.8719 -1.0204 17 1 3.7820 -1.3839 -0.0950 18 7 4.0462 -1.6254 -2.1655 19 6 3.4104 -2.9645 -2.2604 20 6 3.6607 -3.3721 -3.7341 21 6 3.4975 -2.0363 -4.4948 22 6 3.7359 -0.9406 -3.4392 23 6 1.9953 -0.7712 -1.1334 24 1 -0.3633 -1.0248 0.0759 25 1 -0.3633 0.5781 0.8496 26 1 -0.3633 0.4467 -0.9255 27 1 1.5640 1.9273 0.8328 28 1 1.7325 1.8613 -0.9378 29 1 3.7814 0.8571 1.0904 30 1 3.9104 2.3510 0.1306 31 1 5.8649 0.0357 0.1437 32 1 6.0512 -0.2065 -1.6099 33 1 9.0899 3.3048 -0.8684 34 1 3.8908 -3.6675 -1.5798 35 1 2.3418 -2.8984 -2.0556 36 1 2.9176 -4.0977 -4.0651 37 1 4.6681 -3.7683 -3.8618 38 1 2.4907 -1.9545 -4.9043 39 1 4.2369 -1.9605 -5.2922 40 1 2.8379 -0.3334 -3.3250 41 1 4.5745 -0.3109 -3.7361 42 1 1.7325 -0.2717 -2.0658 43 1 1.5634 -1.7719 -1.1233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259760097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:02 Heat of formation + Delta-G solvation = -14.508845 kcal Electronic energy + Delta-G solvation = -20166.056154 eV Core-core repulsion = 17437.812699 eV Total energy + Delta-G solvation = -2728.243455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23665 -38.54774 -36.14145 -34.32920 -32.96137 -30.71567 -29.78849 -29.09746 -27.13290 -24.67011 -24.13314 -22.27687 -22.09362 -21.47980 -19.89209 -18.79894 -17.42637 -16.93134 -16.39903 -16.09521 -15.81168 -15.58582 -14.95828 -14.83908 -14.60163 -14.37438 -14.10574 -13.67871 -13.53958 -13.16203 -13.04365 -12.85847 -12.73713 -12.50873 -12.25921 -12.23062 -12.07218 -11.94329 -11.85599 -11.63771 -11.31847 -11.29029 -11.07683 -10.80014 -10.67945 -9.40551 -9.05660 -8.24588 -6.24887 1.36428 1.36867 1.50901 2.39489 2.86036 3.11686 3.24034 3.71353 3.77940 3.92869 3.99293 4.04921 4.11715 4.19545 4.33577 4.40586 4.49812 4.54991 4.59736 4.62699 4.74079 4.77208 4.79579 4.91813 4.93184 4.99358 5.02215 5.03643 5.12378 5.16426 5.24663 5.32917 5.37256 5.40751 5.57666 5.70711 5.76092 5.97435 6.07903 6.14338 6.30036 6.36466 6.81845 7.38646 8.92098 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.008330 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.385415 B = 3360.590033 C = 4501.401352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.064 3.936 4 C -0.100 4.100 5 C -0.057 4.057 6 H 0.042 0.958 7 C 0.010 3.990 8 C -0.514 4.514 9 H 0.034 0.966 10 C 0.006 3.994 11 N -0.954 5.954 12 Si 0.944 3.056 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.252 1.252 16 C 0.091 3.909 17 H 0.077 0.923 18 N -0.524 5.524 19 C 0.026 3.974 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.030 3.970 23 C 0.035 3.965 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.087 0.913 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.005 0.995 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 -13.426 -2.694 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.064 4.064 4 C -0.139 4.139 5 C -0.076 4.076 6 H 0.060 0.940 7 C -0.027 4.027 8 C -0.552 4.552 9 H 0.052 0.948 10 C -0.190 4.190 11 N -0.595 5.595 12 Si 0.769 3.231 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.176 1.176 16 C -0.018 4.018 17 H 0.095 0.905 18 N -0.247 5.247 19 C -0.101 4.101 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.098 4.098 23 C -0.094 4.094 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.042 0.958 27 H 0.105 0.895 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.074 -13.609 -2.176 20.425 hybrid contribution -0.009 0.801 -0.706 1.068 sum -15.083 -12.807 -2.882 19.996 Atomic orbital electron populations 1.22417 0.85764 1.03064 1.00882 1.61916 1.08838 1.13543 1.42992 1.22091 0.94848 0.89153 1.00317 1.21468 0.94050 0.99942 0.98393 1.20954 0.95571 0.93820 0.97299 0.93971 1.19359 0.93249 0.94370 0.95751 1.21494 0.92369 0.94076 1.47253 0.94810 1.25885 0.99875 0.98361 0.94918 1.70061 1.12349 1.23948 1.53174 0.85737 0.78131 0.80253 0.78969 1.19667 1.21129 1.17618 1.21749 0.91526 0.94204 0.94333 0.90502 1.64958 1.54546 1.03294 1.01928 1.23414 0.98095 0.90385 0.98225 1.22453 1.02651 0.96825 0.93407 1.22384 1.02435 0.94117 0.97391 1.22864 0.99316 0.97334 0.90267 1.22716 0.96253 0.98749 0.91696 0.90190 0.90358 0.95751 0.89480 0.95735 0.92225 0.92979 0.97618 0.96114 0.92791 0.90072 0.92160 0.88791 0.91389 0.90127 0.91074 0.93722 0.93081 0.95146 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.59 127.69 1.22 1.75 16 2 N -0.55 -14.70 4.91 -922.39 -4.53 -19.23 16 3 C 0.06 1.91 5.47 86.31 0.47 2.39 16 4 C -0.10 -3.83 5.15 30.65 0.16 -3.68 16 5 C -0.06 -2.34 1.48 -10.71 -0.02 -2.36 16 6 H 0.04 1.83 6.90 -2.39 -0.02 1.82 16 7 C 0.01 0.50 3.45 29.85 0.10 0.60 16 8 C -0.51 -30.42 9.00 25.60 0.23 -30.19 16 9 H 0.03 2.18 7.35 -2.91 -0.02 2.16 16 10 C 0.01 0.34 5.47 84.66 0.46 0.80 16 11 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 12 Si 0.94 47.08 27.47 68.60 1.88 48.96 16 13 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 15 H -0.25 -12.00 6.54 99.48 0.65 -11.35 16 16 C 0.09 3.02 1.95 44.96 0.09 3.10 16 17 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 18 N -0.52 -16.50 4.60 -857.57 -3.94 -20.45 16 19 C 0.03 0.60 6.37 86.65 0.55 1.15 16 20 C -0.12 -2.28 7.06 31.80 0.22 -2.05 16 21 C -0.13 -2.75 6.93 31.47 0.22 -2.54 16 22 C 0.03 0.90 5.11 86.45 0.44 1.34 16 23 C 0.04 0.95 4.07 86.32 0.35 1.30 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 26 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 2.26 7.08 -2.39 -0.02 2.25 16 31 H 0.01 0.28 7.20 -2.39 -0.02 0.26 16 32 H 0.02 1.05 6.96 -2.38 -0.02 1.03 16 33 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.23 5.54 -2.39 -0.01 1.22 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.32 5.30 -2.39 -0.01 1.31 16 41 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 42 H 0.03 0.85 6.02 -2.39 -0.01 0.84 16 43 H 0.09 2.10 6.02 -2.39 -0.01 2.08 16 Total: -1.00 -67.74 315.21 -0.88 -68.62 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.90 Total: 11.64 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.51 Total: -28.37 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -8.18 Total: -100.85 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.88 Total: 48.96 kcal Total: -67.74 -0.88 -68.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.108 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds