Wall clock time and date at job start Mon Mar 30 2020 04:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46848 * 111.00082 * 2 1 4 4 C 1.53032 * 109.52375 * 185.83494 * 3 2 1 5 5 C 1.53118 * 109.28153 * 300.82092 * 4 3 2 6 6 H 1.08997 * 109.57474 * 177.59045 * 5 4 3 7 7 C 1.53000 * 109.52294 * 297.74820 * 5 4 3 8 8 C 1.50696 * 109.47091 * 294.07599 * 7 5 4 9 9 H 1.07992 * 120.00446 * 0.02562 * 8 7 5 10 10 C 1.37881 * 119.99699 * 179.72647 * 8 7 5 11 11 N 1.31515 * 120.00134 * 0.26936 * 10 8 7 12 12 Si 1.86804 * 119.99951 * 180.27483 * 10 8 7 13 13 H 1.48498 * 109.46866 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47061 * 119.99812 * 12 10 8 15 15 H 1.48498 * 109.47053 * 239.99590 * 12 10 8 16 16 C 1.53119 * 109.15880 * 57.65505 * 5 4 3 17 17 H 1.08997 * 109.50473 * 62.28546 * 16 5 4 18 18 N 1.46899 * 109.50366 * 182.40505 * 16 5 4 19 19 C 1.48535 * 111.00079 * 178.61476 * 18 16 5 20 20 C 1.54941 * 103.22310 * 159.72029 * 19 18 16 21 21 C 1.54585 * 102.92308 * 322.58610 * 20 19 18 22 22 C 1.47897 * 111.00077 * 296.01437 * 18 16 5 23 23 C 1.46844 * 110.99825 * 124.20704 * 2 1 3 24 24 H 1.08994 * 109.47197 * 295.79081 * 1 2 3 25 25 H 1.09000 * 109.46836 * 55.78798 * 1 2 3 26 26 H 1.08994 * 109.46874 * 175.79085 * 1 2 3 27 27 H 1.09003 * 109.46359 * 305.85603 * 3 2 1 28 28 H 1.09004 * 109.46401 * 65.83423 * 3 2 1 29 29 H 1.09001 * 109.50356 * 180.87831 * 4 3 2 30 30 H 1.09000 * 109.50498 * 60.76855 * 4 3 2 31 31 H 1.08998 * 109.47238 * 174.07228 * 7 5 4 32 32 H 1.09002 * 109.46813 * 54.07363 * 7 5 4 33 33 H 0.96998 * 120.00252 * 180.02562 * 11 10 8 34 34 H 1.08996 * 110.67015 * 278.15427 * 19 18 16 35 35 H 1.08999 * 110.66377 * 41.29091 * 19 18 16 36 36 H 1.09005 * 110.71992 * 204.22892 * 20 19 18 37 37 H 1.09002 * 110.72009 * 80.94827 * 20 19 18 38 38 H 1.09001 * 110.31355 * 263.04217 * 21 20 19 39 39 H 1.09004 * 110.31025 * 140.87286 * 21 20 19 40 40 H 1.09002 * 109.91590 * 333.50922 * 22 18 16 41 41 H 1.08999 * 109.92177 * 94.79766 * 22 18 16 42 42 H 1.08998 * 109.46229 * 54.14473 * 23 2 1 43 43 H 1.08997 * 109.46507 * 294.17803 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1466 5 6 4.1188 0.5370 1.0145 6 1 5.1998 0.4714 0.8918 7 6 3.7958 1.2367 2.3362 8 6 4.5014 2.5673 2.3857 9 1 5.1182 2.8827 1.5572 10 6 4.3546 3.3850 3.4862 11 7 3.6030 3.0013 4.4949 12 14 5.2231 5.0378 3.5443 13 1 6.0017 5.2320 2.2948 14 1 4.2164 6.1217 3.6743 15 1 6.1421 5.0733 4.7103 16 6 3.5181 -0.8714 1.0209 17 1 3.7814 -1.3836 0.0955 18 7 4.0460 -1.6246 2.1664 19 6 3.4585 -2.9876 2.2237 20 6 4.4674 -3.7718 3.0999 21 6 5.8315 -3.1950 2.6569 22 6 5.5070 -1.8199 2.0444 23 6 1.9952 -0.7707 1.1338 24 1 -0.3633 0.4471 0.9252 25 1 -0.3633 0.5778 -0.8499 26 1 -0.3633 -1.0248 -0.0754 27 1 1.5634 1.9258 -0.8330 28 1 1.7327 1.8608 0.9377 29 1 3.9099 2.3512 -0.1309 30 1 3.7814 0.8568 -1.0905 31 1 4.1313 0.6163 3.1673 32 1 2.7196 1.3931 2.4110 33 1 3.4994 3.5766 5.2690 34 1 2.4764 -2.9637 2.6957 35 1 3.3966 -3.4220 1.2259 36 1 4.4132 -4.8398 2.8884 37 1 4.2917 -3.5776 4.1580 38 1 6.2917 -3.8425 1.9105 39 1 6.4910 -3.0798 3.5171 40 1 5.7973 -1.8035 0.9938 41 1 6.0333 -1.0368 2.5900 42 1 1.5634 -1.7714 1.1243 43 1 1.7324 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259760104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:05 Heat of formation + Delta-G solvation = 0.982351 kcal Electronic energy + Delta-G solvation = -20225.996115 eV Core-core repulsion = 17498.424409 eV Total energy + Delta-G solvation = -2727.571706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59058 -37.46260 -34.14751 -32.41228 -31.40402 -28.73318 -28.24939 -27.55581 -25.49601 -23.05088 -22.51363 -21.73678 -20.42977 -20.17943 -17.62674 -16.24030 -15.90998 -15.67326 -14.79190 -14.45307 -14.40390 -13.98837 -13.66903 -13.48075 -13.15942 -12.51357 -12.39701 -12.05641 -11.99556 -11.75420 -11.42228 -11.23851 -11.04188 -10.98550 -10.89748 -10.70977 -10.61415 -10.47353 -10.26851 -10.20989 -9.76172 -9.43295 -9.04407 -8.78950 -8.26094 -7.82259 -7.74398 -5.88848 -3.89162 3.34874 3.42868 3.46204 4.15252 4.53398 4.65633 4.93740 4.95732 5.20330 5.37992 5.46337 5.50146 5.53943 5.61698 5.73220 5.76563 5.83796 5.94396 5.95960 5.99041 6.01976 6.03582 6.07672 6.16835 6.23440 6.33483 6.38807 6.48264 6.50462 6.57927 6.66662 6.90095 6.94083 7.25182 7.36291 7.49143 7.54131 7.74134 7.87199 8.07081 8.22692 8.57566 9.19317 9.72948 11.21950 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.008294 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.675415 B = 3374.946017 C = 4487.976293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.100 4.100 5 C -0.077 4.077 6 H 0.055 0.945 7 C 0.036 3.964 8 C -0.512 4.512 9 H 0.052 0.948 10 C 0.057 3.943 11 N -0.893 5.893 12 Si 0.883 3.117 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.090 3.910 17 H 0.033 0.967 18 N -0.499 5.499 19 C 0.033 3.967 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.042 3.958 23 C 0.065 3.935 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.014 0.986 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -11.017 -6.648 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.138 4.138 5 C -0.096 4.096 6 H 0.073 0.927 7 C -0.001 4.001 8 C -0.551 4.551 9 H 0.070 0.930 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.711 3.289 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.019 4.019 17 H 0.051 0.949 18 N -0.223 5.223 19 C -0.095 4.095 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.086 4.086 23 C -0.063 4.063 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.669 -10.870 -6.452 12.750 hybrid contribution 0.339 0.960 0.102 1.023 sum -1.330 -9.910 -6.350 11.845 Atomic orbital electron populations 1.22283 0.88192 1.01294 1.00304 1.61951 1.06789 1.14914 1.43385 1.22134 0.96262 0.88063 1.00828 1.21478 0.93873 1.01216 0.97211 1.21293 0.98089 0.91601 0.98608 0.92658 1.19110 0.96384 0.93963 0.90665 1.21357 1.28651 1.02806 1.02285 0.93008 1.24978 0.95572 0.97886 0.95919 1.69987 1.39312 1.36982 1.07054 0.86686 0.79572 0.84763 0.77858 1.19887 1.21259 1.21214 1.21818 0.94043 0.96032 0.89992 0.94893 1.64734 1.03690 1.12806 1.41068 1.23223 0.98730 0.89562 0.98016 1.22455 0.94630 0.98380 1.00559 1.22402 0.97605 0.96329 1.00522 1.22794 0.89714 0.97016 0.99123 1.22027 0.94498 0.97096 0.92698 0.95708 0.91843 0.92111 0.92123 0.92936 0.90505 0.93658 0.94846 0.96830 0.93370 0.90475 0.94441 0.91752 0.90785 0.92157 0.91223 0.94342 0.89725 0.92271 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 60.07 0.58 0.97 16 2 N -0.55 -9.29 4.91 -242.97 -1.19 -10.48 16 3 C 0.05 1.01 5.22 -3.84 -0.02 0.99 16 4 C -0.10 -1.92 5.45 -26.65 -0.15 -2.07 16 5 C -0.08 -1.60 1.95 -90.50 -0.18 -1.78 16 6 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 7 C 0.04 0.91 3.74 -27.88 -0.10 0.80 16 8 C -0.51 -14.28 8.39 -34.44 -0.29 -14.57 16 9 H 0.05 1.42 7.13 -52.49 -0.37 1.04 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 12 Si 0.88 21.82 29.54 -169.99 -5.02 16.80 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 C 0.09 1.64 1.49 -67.63 -0.10 1.54 16 17 H 0.03 0.60 7.98 -51.93 -0.41 0.19 16 18 N -0.50 -8.78 4.15 -222.41 -0.92 -9.70 16 19 C 0.03 0.47 5.37 -1.89 -0.01 0.46 16 20 C -0.12 -1.53 7.06 -24.87 -0.18 -1.71 16 21 C -0.13 -1.69 6.93 -25.38 -0.18 -1.86 16 22 C 0.04 0.67 5.55 -2.76 -0.02 0.65 16 23 C 0.06 1.15 4.30 -3.83 -0.02 1.14 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 28 H 0.05 1.13 6.39 -51.93 -0.33 0.80 16 29 H 0.08 1.57 6.96 -51.93 -0.36 1.21 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.94 7.37 -51.93 -0.38 0.55 16 32 H 0.01 0.37 4.95 -51.93 -0.26 0.12 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 35 H 0.04 0.51 8.01 -51.93 -0.42 0.10 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 41 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.06 0.94 6.94 -51.93 -0.36 0.58 16 43 H 0.05 1.10 6.64 -51.93 -0.35 0.76 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -29.83 318.42 -10.13 -39.96 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.78 Total: -1.22 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.75 Total: -13.89 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.38 Total: -46.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.83 -10.13 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.944 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds