Wall clock time and date at job start Mon Mar 30 2020 04:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46843 * 111.00307 * 2 1 4 4 C 1.53034 * 109.52576 * 174.16340 * 3 2 1 5 5 C 1.53122 * 109.27891 * 59.17826 * 4 3 2 6 6 H 1.09001 * 109.51990 * 182.37927 * 5 4 3 7 7 C 1.53004 * 109.51923 * 62.25173 * 5 4 3 8 8 C 1.50701 * 109.47211 * 65.00424 * 7 5 4 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 7 5 10 10 C 1.37871 * 119.99694 * 180.27574 * 8 7 5 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 7 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 7 13 13 H 1.48494 * 109.47230 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47301 * 119.99669 * 12 10 8 15 15 H 1.48498 * 109.47430 * 239.99516 * 12 10 8 16 16 C 1.53113 * 109.15873 * 302.34722 * 5 4 3 17 17 H 1.08997 * 109.50771 * 297.71367 * 16 5 4 18 18 N 1.46902 * 109.50112 * 177.59263 * 16 5 4 19 19 C 1.48539 * 110.99946 * 57.60605 * 18 16 5 20 20 C 1.54931 * 103.22744 * 159.71873 * 19 18 16 21 21 C 1.54599 * 102.92290 * 322.58447 * 20 19 18 22 22 C 1.47905 * 111.00033 * 174.99522 * 18 16 5 23 23 C 1.46848 * 110.99853 * 235.79117 * 2 1 3 24 24 H 1.09002 * 109.47071 * 63.95416 * 1 2 3 25 25 H 1.08998 * 109.47358 * 183.95672 * 1 2 3 26 26 H 1.08998 * 109.46789 * 303.95655 * 1 2 3 27 27 H 1.09001 * 109.45902 * 54.13968 * 3 2 1 28 28 H 1.09003 * 109.45370 * 294.17379 * 3 2 1 29 29 H 1.08993 * 109.50042 * 299.23589 * 4 3 2 30 30 H 1.09000 * 109.50536 * 179.12053 * 4 3 2 31 31 H 1.09000 * 109.47211 * 304.99451 * 7 5 4 32 32 H 1.09007 * 109.46376 * 184.99993 * 7 5 4 33 33 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.66474 * 278.15602 * 19 18 16 35 35 H 1.09003 * 110.66679 * 41.28326 * 19 18 16 36 36 H 1.09005 * 110.72048 * 204.22661 * 20 19 18 37 37 H 1.09002 * 110.72429 * 80.94645 * 20 19 18 38 38 H 1.08996 * 110.30691 * 263.04288 * 21 20 19 39 39 H 1.09002 * 110.30694 * 140.87696 * 21 20 19 40 40 H 1.08995 * 109.91673 * 333.51532 * 22 18 16 41 41 H 1.09007 * 109.90957 * 94.80499 * 22 18 16 42 42 H 1.09005 * 109.46348 * 305.85754 * 23 2 1 43 43 H 1.09006 * 109.46384 * 65.83014 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0145 6 1 5.1999 0.4722 -0.8912 7 6 3.7958 1.2366 -2.3362 8 6 4.4832 2.5771 -2.3761 9 1 5.0896 2.8980 -1.5419 10 6 4.3331 3.3964 -3.4748 11 7 3.5945 3.0057 -4.4904 12 14 5.1789 5.0613 -3.5209 13 1 5.9446 5.2625 -2.2645 14 1 6.1060 5.1137 -4.6798 15 1 4.1583 6.1316 -3.6547 16 6 3.5181 -0.8715 -1.0209 17 1 3.7813 -1.3837 -0.0955 18 7 4.0460 -1.6246 -2.1664 19 6 5.5293 -1.6893 -2.1229 20 6 5.8582 -2.8999 -3.0322 21 6 4.7180 -3.8933 -2.7110 22 6 3.5803 -3.0281 -2.1381 23 6 1.9953 -0.7708 -1.1338 24 1 -0.3633 0.4512 -0.9233 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 1.5634 1.9256 0.8329 28 1 1.7325 1.8606 -0.9377 29 1 3.7814 0.8567 1.0905 30 1 3.9100 2.3511 0.1309 31 1 2.7181 1.3783 -2.4184 32 1 4.1461 0.6238 -3.1668 33 1 3.4885 3.5823 -5.2631 34 1 5.9662 -0.7756 -2.5259 35 1 5.8770 -1.8669 -1.1052 36 1 6.8266 -3.3267 -2.7709 37 1 5.8336 -2.6110 -4.0829 38 1 5.0485 -4.6221 -1.9710 39 1 4.3889 -4.3980 -3.6194 40 1 3.3665 -3.3277 -1.1121 41 1 2.6866 -3.1352 -2.7529 42 1 1.5634 -1.7716 -1.1243 43 1 1.7326 -0.2707 -2.0661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259760111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:07 Heat of formation + Delta-G solvation = -18.532417 kcal Electronic energy + Delta-G solvation = -20242.799036 eV Core-core repulsion = 17514.381106 eV Total energy + Delta-G solvation = -2728.417930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03452 -38.75539 -35.84688 -34.28225 -32.90054 -30.06143 -29.80905 -29.03991 -27.09344 -24.90687 -23.89847 -23.30740 -21.77240 -21.27131 -19.36276 -18.31322 -17.33542 -16.85114 -16.47818 -16.17809 -15.93852 -15.23923 -15.18205 -14.97250 -14.44239 -14.07247 -13.99440 -13.75702 -13.19558 -13.15788 -13.01179 -12.78372 -12.74204 -12.41003 -12.36031 -12.16692 -12.08996 -12.03350 -11.90274 -11.50974 -11.38779 -11.11872 -10.91240 -10.69987 -10.46695 -9.25265 -9.14621 -8.11574 -6.19648 1.37934 1.38850 1.50950 2.43367 2.82595 3.21375 3.36252 3.74426 3.81575 4.03676 4.05778 4.13413 4.23550 4.34230 4.40238 4.47110 4.57764 4.62705 4.66690 4.68460 4.77653 4.82560 4.94294 4.95760 4.97803 4.99620 5.02192 5.06889 5.11661 5.17957 5.26058 5.32497 5.39075 5.51664 5.67006 5.93524 6.01389 6.03487 6.11805 6.19301 6.37072 6.38783 6.99399 7.47247 8.99744 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.008395 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.914654 B = 3334.415081 C = 4490.902550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.060 3.940 4 C -0.096 4.096 5 C -0.074 4.074 6 H 0.049 0.951 7 C 0.056 3.944 8 C -0.525 4.525 9 H 0.055 0.945 10 C 0.000 4.000 11 N -0.933 5.933 12 Si 0.952 3.048 13 H -0.262 1.262 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.099 3.901 17 H 0.046 0.954 18 N -0.530 5.530 19 C 0.039 3.961 20 C -0.119 4.119 21 C -0.121 4.121 22 C 0.033 3.967 23 C 0.074 3.926 24 H 0.011 0.989 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.012 0.988 29 H 0.070 0.930 30 H 0.060 0.940 31 H -0.014 1.014 32 H -0.003 1.003 33 H 0.258 0.742 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -11.894 8.446 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.067 4.067 4 C -0.135 4.135 5 C -0.093 4.093 6 H 0.067 0.933 7 C 0.019 3.981 8 C -0.563 4.563 9 H 0.073 0.927 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.778 3.222 13 H -0.186 1.186 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.010 4.010 17 H 0.064 0.936 18 N -0.255 5.255 19 C -0.088 4.088 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.095 4.095 23 C -0.054 4.054 24 H 0.029 0.971 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.004 0.996 32 H 0.016 0.984 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -1.041 -11.798 8.260 14.440 hybrid contribution 0.219 1.308 -0.675 1.488 sum -0.823 -10.490 7.585 12.971 Atomic orbital electron populations 1.22414 0.86256 1.03042 1.00491 1.62030 1.08547 1.13577 1.42373 1.22031 0.95979 0.89040 0.99688 1.21431 0.94346 1.00219 0.97464 1.21180 0.98017 0.93368 0.96690 0.93273 1.18800 0.94139 0.93070 0.92095 1.21745 1.29266 1.03214 1.02100 0.92658 1.25852 0.96289 1.01975 0.95540 1.70134 1.41251 1.38434 1.07551 0.85586 0.78411 0.79925 0.78265 1.18602 1.20802 1.20773 1.21657 0.94111 0.94377 0.90877 0.93641 1.64638 1.07249 1.12179 1.41420 1.23120 0.88025 0.98986 0.98691 1.22460 0.99307 0.94560 0.99362 1.22368 0.94359 0.97362 1.01765 1.22924 0.99048 0.87476 1.00038 1.21910 0.94547 0.97761 0.91186 0.97067 0.89866 0.89833 0.89645 0.97012 0.91128 0.92092 0.99588 0.98438 0.93321 0.92596 0.93413 0.89121 0.92137 0.89721 0.90307 0.93204 0.91181 0.90121 0.96874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.59 127.69 1.22 1.92 16 2 N -0.54 -17.82 4.91 -922.58 -4.53 -22.35 16 3 C 0.06 2.22 5.22 86.33 0.45 2.67 16 4 C -0.10 -3.68 5.44 30.65 0.17 -3.52 16 5 C -0.07 -3.12 1.77 -10.71 -0.02 -3.13 16 6 H 0.05 2.12 7.03 -2.39 -0.02 2.10 16 7 C 0.06 2.99 3.75 29.85 0.11 3.10 16 8 C -0.52 -30.05 8.38 25.60 0.21 -29.84 16 9 H 0.06 3.06 7.07 -2.91 -0.02 3.04 16 10 C 0.00 0.02 5.46 84.65 0.46 0.49 16 11 N -0.93 -58.28 13.29 21.45 0.28 -57.99 16 12 Si 0.95 45.38 29.54 68.60 2.03 47.40 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 C 0.10 3.58 1.51 44.96 0.07 3.65 16 17 H 0.05 1.56 7.96 -2.39 -0.02 1.54 16 18 N -0.53 -18.76 4.17 -857.56 -3.58 -22.34 16 19 C 0.04 1.29 5.30 86.65 0.46 1.75 16 20 C -0.12 -3.05 7.06 31.80 0.22 -2.82 16 21 C -0.12 -2.66 6.93 31.47 0.22 -2.44 16 22 C 0.03 0.89 5.57 86.44 0.48 1.37 16 23 C 0.07 2.65 4.47 86.32 0.39 3.04 16 24 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 27 H 0.09 2.69 8.09 -2.39 -0.02 2.67 16 28 H 0.01 0.52 6.41 -2.39 -0.02 0.51 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 2.50 6.90 -2.39 -0.02 2.48 16 31 H -0.01 -0.83 4.94 -2.39 -0.01 -0.84 16 32 H 0.00 -0.17 7.31 -2.38 -0.02 -0.18 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.06 2.18 7.65 -2.39 -0.02 2.17 16 35 H 0.05 1.43 8.02 -2.39 -0.02 1.41 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.25 7.65 -2.39 -0.02 1.23 16 41 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.08 2.50 7.37 -2.38 -0.02 2.48 16 43 H 0.01 0.57 6.62 -2.38 -0.02 0.55 16 Total: -1.00 -66.28 318.21 -0.40 -66.68 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.95 Total: 12.37 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.45 Total: -23.77 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -7.82 Total: -102.69 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -66.28 -0.40 -66.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.148 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds