Wall clock time and date at job start Mon Mar 30 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46850 * 110.99953 * 2 1 4 4 C 1.53039 * 109.52453 * 185.83755 * 3 2 1 5 5 C 1.53116 * 109.27832 * 300.82079 * 4 3 2 6 6 H 1.09005 * 109.52612 * 297.68442 * 5 4 3 7 7 C 1.53000 * 109.52443 * 177.55510 * 5 4 3 8 8 C 1.50707 * 109.46747 * 65.12936 * 7 5 4 9 9 H 1.07996 * 119.99910 * 0.02562 * 8 7 5 10 10 C 1.37874 * 119.99782 * 179.97438 * 8 7 5 11 11 N 1.31514 * 120.00128 * 359.72724 * 10 8 7 12 12 Si 1.86806 * 119.99920 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46747 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47301 * 120.00290 * 12 10 8 15 15 H 1.48499 * 109.46881 * 240.00228 * 12 10 8 16 16 C 1.53122 * 109.21416 * 57.62048 * 5 4 3 17 17 H 1.09008 * 109.50182 * 62.31932 * 16 5 4 18 18 N 1.46900 * 109.50495 * 182.43625 * 16 5 4 19 19 C 1.48529 * 110.99892 * 65.77736 * 18 16 5 20 20 C 1.54942 * 103.22830 * 159.72069 * 19 18 16 21 21 C 1.54593 * 102.92012 * 322.58709 * 20 19 18 22 22 C 1.47904 * 110.99729 * 183.17187 * 18 16 5 23 23 C 1.46848 * 110.99826 * 124.20484 * 2 1 3 24 24 H 1.09004 * 109.46892 * 63.95566 * 1 2 3 25 25 H 1.08993 * 109.47225 * 183.95087 * 1 2 3 26 26 H 1.08997 * 109.47574 * 303.95576 * 1 2 3 27 27 H 1.09003 * 109.46044 * 65.82318 * 3 2 1 28 28 H 1.08993 * 109.45699 * 305.84792 * 3 2 1 29 29 H 1.08995 * 109.50405 * 180.88329 * 4 3 2 30 30 H 1.08997 * 109.53255 * 60.78133 * 4 3 2 31 31 H 1.08992 * 109.47362 * 305.12738 * 7 5 4 32 32 H 1.09001 * 109.47379 * 185.12610 * 7 5 4 33 33 H 0.97003 * 120.00270 * 180.02562 * 11 10 8 34 34 H 1.09001 * 110.66576 * 278.15230 * 19 18 16 35 35 H 1.08995 * 110.67270 * 41.28549 * 19 18 16 36 36 H 1.08989 * 110.72703 * 204.22444 * 20 19 18 37 37 H 1.09004 * 110.87127 * 81.00957 * 20 19 18 38 38 H 1.09009 * 110.30539 * 263.04245 * 21 20 19 39 39 H 1.08996 * 110.39563 * 140.91521 * 21 20 19 40 40 H 1.08996 * 109.91806 * 333.50779 * 22 18 16 41 41 H 1.09000 * 109.91598 * 94.60686 * 22 18 16 42 42 H 1.08998 * 109.46751 * 294.17928 * 23 2 1 43 43 H 1.09000 * 109.46219 * 54.16321 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1187 0.5371 1.0144 6 1 3.8896 1.0362 1.9560 7 6 5.6360 0.4450 0.8406 8 6 6.2389 1.8217 0.9525 9 1 5.6034 2.6766 1.1303 10 6 7.6018 1.9895 0.8290 11 7 8.3763 0.9476 0.6189 12 14 8.3490 3.6960 0.9670 13 1 7.2721 4.6899 1.2075 14 1 9.3116 3.7250 2.0974 15 1 9.0572 4.0298 -0.2948 16 6 3.5182 -0.8715 1.0225 17 1 3.7815 -1.3846 0.0975 18 7 4.0464 -1.6232 2.1688 19 6 3.5876 -1.0304 3.4511 20 6 3.7689 -2.1900 4.4627 21 6 3.3694 -3.4345 3.6371 22 6 3.5457 -3.0149 2.1659 23 6 1.9952 -0.7707 1.1338 24 1 -0.3633 0.4512 -0.9234 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3634 0.5740 0.8524 27 1 1.7324 1.8608 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9098 2.3513 -0.1309 30 1 3.7819 0.8572 -1.0906 31 1 5.8647 0.0268 -0.1396 32 1 6.0523 -0.1980 1.6161 33 1 9.3352 1.0656 0.5323 34 1 4.2104 -0.1792 3.7260 35 1 2.5399 -0.7369 3.3862 36 1 3.1039 -2.0640 5.3170 37 1 4.8061 -2.2610 4.7901 38 1 2.3306 -3.7006 3.8327 39 1 4.0249 -4.2729 3.8726 40 1 2.5877 -3.0638 1.6485 41 1 4.2669 -3.6679 1.6744 42 1 1.7324 -0.2708 2.0661 43 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259760118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:10 Heat of formation + Delta-G solvation = 3.853689 kcal Electronic energy + Delta-G solvation = -20077.410914 eV Core-core repulsion = 17349.963718 eV Total energy + Delta-G solvation = -2727.447196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83298 -37.34064 -34.41596 -32.40754 -31.47842 -28.74293 -28.44353 -27.83198 -25.37981 -23.29980 -22.72321 -21.06171 -20.72260 -20.10970 -18.39978 -16.34855 -15.92971 -15.63581 -14.94619 -14.76691 -14.44244 -14.17234 -13.64089 -13.34824 -13.20878 -12.55138 -12.43421 -12.09331 -12.04872 -11.77593 -11.69606 -11.42615 -11.11598 -11.06854 -10.84261 -10.75118 -10.65785 -10.60981 -10.27213 -10.20109 -9.85234 -9.52242 -9.02929 -8.76162 -8.21849 -8.18654 -7.71187 -5.85981 -3.86705 3.37106 3.44773 3.47830 4.06359 4.48180 4.55488 4.91056 4.94485 5.11830 5.14374 5.27973 5.31583 5.47207 5.50413 5.56047 5.62870 5.64641 5.70946 5.76017 5.84890 5.94161 5.95615 6.00733 6.03576 6.11214 6.23977 6.30346 6.38341 6.43107 6.49759 6.54274 6.94572 7.08469 7.19269 7.27830 7.34078 7.41501 7.64038 7.88909 8.10738 8.24255 8.59152 9.21628 9.75459 11.25048 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.007433 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.008837 B = 3766.066800 C = 4896.687407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.538 5.538 3 C 0.054 3.946 4 C -0.102 4.102 5 C -0.069 4.069 6 H 0.051 0.949 7 C 0.036 3.964 8 C -0.513 4.513 9 H 0.051 0.949 10 C 0.057 3.943 11 N -0.893 5.893 12 Si 0.883 3.117 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.085 3.915 17 H 0.085 0.915 18 N -0.492 5.492 19 C 0.028 3.972 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.029 3.971 23 C 0.024 3.976 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.019 0.981 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.011 0.989 32 H 0.034 0.966 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 -5.531 3.426 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.141 4.141 5 C -0.088 4.088 6 H 0.069 0.931 7 C -0.001 4.001 8 C -0.551 4.551 9 H 0.070 0.930 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.712 3.288 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.024 4.024 17 H 0.103 0.897 18 N -0.214 5.214 19 C -0.099 4.099 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.099 4.099 23 C -0.106 4.106 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.482 -5.797 2.921 14.963 hybrid contribution -0.747 1.306 0.810 1.709 sum -14.229 -4.490 3.730 15.380 Atomic orbital electron populations 1.22335 0.88280 1.01188 1.00412 1.61890 1.06597 1.14650 1.43135 1.22253 0.97720 0.87911 0.99484 1.21587 0.91038 1.01766 0.99680 1.21241 0.99782 0.90891 0.96838 0.93061 1.19031 0.86997 0.96530 0.97527 1.21335 0.91866 0.93767 1.48160 0.93028 1.24981 0.97471 0.96120 0.95792 1.69990 1.04231 1.28900 1.50180 0.86677 0.79281 0.85342 0.77507 1.19945 1.21220 1.21206 1.21976 0.89371 0.96985 0.94037 0.89677 1.65035 1.54178 1.00684 1.01512 1.23328 0.98696 0.98087 0.89829 1.22469 1.01998 0.94438 0.97235 1.22367 1.00695 0.98481 0.95137 1.22924 0.98815 0.91932 0.96275 1.22879 0.98594 0.97399 0.91693 0.91558 0.92005 0.96214 0.95560 0.91469 0.90462 0.91683 0.97070 0.94784 0.93326 0.89500 0.93892 0.91791 0.90665 0.92240 0.91339 0.93944 0.90569 0.94772 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.62 60.06 0.58 0.90 16 2 N -0.54 -8.14 4.91 -242.96 -1.19 -9.33 16 3 C 0.05 0.85 5.46 -3.83 -0.02 0.83 16 4 C -0.10 -1.95 5.15 -26.65 -0.14 -2.08 16 5 C -0.07 -1.41 1.60 -90.50 -0.14 -1.56 16 6 H 0.05 1.09 7.00 -51.93 -0.36 0.73 16 7 C 0.04 0.94 4.38 -27.88 -0.12 0.82 16 8 C -0.51 -14.42 8.44 -34.44 -0.29 -14.71 16 9 H 0.05 1.41 7.07 -52.49 -0.37 1.04 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 12 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 C 0.09 1.53 1.81 -67.63 -0.12 1.41 16 17 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 18 N -0.49 -8.52 4.55 -222.39 -1.01 -9.53 16 19 C 0.03 0.44 5.44 -1.90 -0.01 0.43 16 20 C -0.12 -1.60 7.06 -24.87 -0.18 -1.78 16 21 C -0.13 -1.55 6.93 -25.37 -0.18 -1.72 16 22 C 0.03 0.41 6.47 -2.75 -0.02 0.39 16 23 C 0.02 0.36 4.07 -3.83 -0.02 0.35 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.67 8.02 -51.93 -0.42 0.25 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 29 H 0.08 1.55 7.04 -51.93 -0.37 1.18 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.03 0.96 7.55 -51.93 -0.39 0.57 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.09 1.52 7.65 -51.93 -0.40 1.13 16 35 H 0.04 0.63 5.43 -51.93 -0.28 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.57 5.73 -51.93 -0.30 0.27 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.03 0.53 5.91 -51.93 -0.31 0.23 16 43 H 0.07 0.94 6.08 -51.93 -0.32 0.62 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -30.09 318.96 -10.15 -40.24 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.71 Total: -1.34 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -0.75 Total: -15.19 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -1.47 Total: -45.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.09 -10.15 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.094 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds