Wall clock time and date at job start Mon Mar 30 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46850 * 110.99953 * 2 1 4 4 C 1.53039 * 109.52453 * 185.83755 * 3 2 1 5 5 C 1.53116 * 109.27832 * 300.82079 * 4 3 2 6 6 H 1.09005 * 109.52612 * 297.68442 * 5 4 3 7 7 C 1.53000 * 109.52443 * 177.55510 * 5 4 3 8 8 C 1.50707 * 109.46747 * 65.12936 * 7 5 4 9 9 H 1.07996 * 119.99910 * 0.02562 * 8 7 5 10 10 C 1.37874 * 119.99782 * 179.97438 * 8 7 5 11 11 N 1.31514 * 120.00128 * 359.72724 * 10 8 7 12 12 Si 1.86806 * 119.99920 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46747 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47301 * 120.00290 * 12 10 8 15 15 H 1.48499 * 109.46881 * 240.00228 * 12 10 8 16 16 C 1.53122 * 109.21416 * 57.62048 * 5 4 3 17 17 H 1.09008 * 109.50182 * 62.31932 * 16 5 4 18 18 N 1.46900 * 109.50495 * 182.43625 * 16 5 4 19 19 C 1.48529 * 110.99892 * 65.77736 * 18 16 5 20 20 C 1.54942 * 103.22830 * 159.72069 * 19 18 16 21 21 C 1.54593 * 102.92012 * 322.58709 * 20 19 18 22 22 C 1.47904 * 110.99729 * 183.17187 * 18 16 5 23 23 C 1.46848 * 110.99826 * 124.20484 * 2 1 3 24 24 H 1.09004 * 109.46892 * 63.95566 * 1 2 3 25 25 H 1.08993 * 109.47225 * 183.95087 * 1 2 3 26 26 H 1.08997 * 109.47574 * 303.95576 * 1 2 3 27 27 H 1.09003 * 109.46044 * 65.82318 * 3 2 1 28 28 H 1.08993 * 109.45699 * 305.84792 * 3 2 1 29 29 H 1.08995 * 109.50405 * 180.88329 * 4 3 2 30 30 H 1.08997 * 109.53255 * 60.78133 * 4 3 2 31 31 H 1.08992 * 109.47362 * 305.12738 * 7 5 4 32 32 H 1.09001 * 109.47379 * 185.12610 * 7 5 4 33 33 H 0.97003 * 120.00270 * 180.02562 * 11 10 8 34 34 H 1.09001 * 110.66576 * 278.15230 * 19 18 16 35 35 H 1.08995 * 110.67270 * 41.28549 * 19 18 16 36 36 H 1.08989 * 110.72703 * 204.22444 * 20 19 18 37 37 H 1.09004 * 110.87127 * 81.00957 * 20 19 18 38 38 H 1.09009 * 110.30539 * 263.04245 * 21 20 19 39 39 H 1.08996 * 110.39563 * 140.91521 * 21 20 19 40 40 H 1.08996 * 109.91806 * 333.50779 * 22 18 16 41 41 H 1.09000 * 109.91598 * 94.60686 * 22 18 16 42 42 H 1.08998 * 109.46751 * 294.17928 * 23 2 1 43 43 H 1.09000 * 109.46219 * 54.16321 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1467 5 6 4.1187 0.5371 1.0144 6 1 3.8896 1.0362 1.9560 7 6 5.6360 0.4450 0.8406 8 6 6.2389 1.8217 0.9525 9 1 5.6034 2.6766 1.1303 10 6 7.6018 1.9895 0.8290 11 7 8.3763 0.9476 0.6189 12 14 8.3490 3.6960 0.9670 13 1 7.2721 4.6899 1.2075 14 1 9.3116 3.7250 2.0974 15 1 9.0572 4.0298 -0.2948 16 6 3.5182 -0.8715 1.0225 17 1 3.7815 -1.3846 0.0975 18 7 4.0464 -1.6232 2.1688 19 6 3.5876 -1.0304 3.4511 20 6 3.7689 -2.1900 4.4627 21 6 3.3694 -3.4345 3.6371 22 6 3.5457 -3.0149 2.1659 23 6 1.9952 -0.7707 1.1338 24 1 -0.3633 0.4512 -0.9234 25 1 -0.3633 -1.0251 0.0708 26 1 -0.3634 0.5740 0.8524 27 1 1.7324 1.8608 0.9376 28 1 1.5634 1.9256 -0.8330 29 1 3.9098 2.3513 -0.1309 30 1 3.7819 0.8572 -1.0906 31 1 5.8647 0.0268 -0.1396 32 1 6.0523 -0.1980 1.6161 33 1 9.3352 1.0656 0.5323 34 1 4.2104 -0.1792 3.7260 35 1 2.5399 -0.7369 3.3862 36 1 3.1039 -2.0640 5.3170 37 1 4.8061 -2.2610 4.7901 38 1 2.3306 -3.7006 3.8327 39 1 4.0249 -4.2729 3.8726 40 1 2.5877 -3.0638 1.6485 41 1 4.2669 -3.6679 1.6744 42 1 1.7324 -0.2708 2.0661 43 1 1.5635 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259760118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:10 Heat of formation + Delta-G solvation = -16.268764 kcal Electronic energy + Delta-G solvation = -20078.283489 eV Core-core repulsion = 17349.963718 eV Total energy + Delta-G solvation = -2728.319771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16673 -38.55127 -36.09979 -34.27655 -32.90938 -30.29074 -29.76599 -29.06308 -27.04472 -24.80186 -24.19962 -22.28762 -22.26411 -21.39675 -19.88572 -18.39272 -17.34915 -16.83933 -16.53219 -16.08451 -15.92481 -15.48587 -14.95661 -14.73129 -14.62781 -14.05831 -13.95339 -13.60533 -13.47349 -13.09091 -12.98064 -12.87673 -12.69990 -12.48861 -12.36548 -12.20551 -12.14170 -12.00222 -11.92965 -11.60612 -11.31170 -11.27854 -10.92105 -10.71945 -10.46513 -9.36610 -8.98542 -8.11180 -6.20391 1.39821 1.39921 1.52631 2.44295 2.88145 3.21157 3.26916 3.75000 3.79483 3.94292 4.00062 4.07532 4.15608 4.21817 4.32831 4.43022 4.52759 4.58047 4.61337 4.64545 4.76129 4.80230 4.82014 4.94759 4.98675 4.99861 5.00381 5.02973 5.11155 5.21771 5.34097 5.36394 5.42233 5.47848 5.66328 5.91309 5.99596 6.01924 6.12683 6.17729 6.34704 6.37189 6.98041 7.46925 9.00697 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.007433 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.008837 B = 3766.066800 C = 4896.687407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.065 3.935 4 C -0.099 4.099 5 C -0.059 4.059 6 H 0.044 0.956 7 C 0.051 3.949 8 C -0.527 4.527 9 H 0.057 0.943 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.957 3.043 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.093 3.907 17 H 0.061 0.939 18 N -0.526 5.526 19 C 0.029 3.971 20 C -0.119 4.119 21 C -0.120 4.120 22 C 0.027 3.973 23 C 0.037 3.963 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.049 0.951 31 H -0.025 1.025 32 H 0.000 1.000 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.841 -5.203 4.143 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.278 5.278 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.078 4.078 6 H 0.063 0.937 7 C 0.013 3.987 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.782 3.218 13 H -0.186 1.186 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.016 4.016 17 H 0.080 0.920 18 N -0.249 5.249 19 C -0.098 4.098 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.101 4.101 23 C -0.092 4.092 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.068 0.932 31 H -0.007 1.007 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.947 -5.470 3.641 17.248 hybrid contribution 0.056 1.165 0.560 1.294 sum -15.891 -4.305 4.200 16.991 Atomic orbital electron populations 1.22408 0.85681 1.02503 1.01453 1.61861 1.08900 1.13942 1.43076 1.22091 0.94733 0.88919 1.00569 1.21474 0.94074 1.00167 0.98038 1.21029 0.96203 0.93436 0.97133 0.93734 1.18784 0.90944 0.94845 0.94085 1.21717 0.92399 0.94686 1.47677 0.92508 1.25916 0.98092 1.00515 0.95339 1.70141 1.04606 1.31510 1.51273 0.85521 0.78496 0.80137 0.77625 1.18565 1.20690 1.20587 1.21701 0.91581 0.94734 0.93588 0.92038 1.64913 1.55737 1.02385 1.01911 1.23286 0.98626 0.98109 0.89826 1.22456 1.01924 0.93769 0.97533 1.22352 1.02541 0.98016 0.92846 1.22975 0.98956 0.89844 0.98278 1.22687 0.95998 0.98531 0.91974 0.90284 0.90563 0.95406 0.95133 0.89396 0.92009 0.93200 1.00690 0.98116 0.93168 0.92649 0.92447 0.89045 0.92141 0.89573 0.90457 0.92613 0.91644 0.94470 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.62 127.69 1.23 1.78 16 2 N -0.55 -15.47 4.91 -922.59 -4.53 -20.00 16 3 C 0.06 1.93 5.46 86.33 0.47 2.40 16 4 C -0.10 -3.84 5.15 30.65 0.16 -3.68 16 5 C -0.06 -2.53 1.60 -10.71 -0.02 -2.55 16 6 H 0.04 1.95 7.00 -2.38 -0.02 1.94 16 7 C 0.05 2.79 4.38 29.85 0.13 2.92 16 8 C -0.53 -30.69 8.44 25.60 0.22 -30.47 16 9 H 0.06 3.18 7.07 -2.91 -0.02 3.16 16 10 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 11 N -0.93 -59.17 13.29 21.45 0.28 -58.88 16 12 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 13 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 C 0.09 3.41 1.81 44.97 0.08 3.49 16 17 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 18 N -0.53 -18.60 4.55 -857.51 -3.90 -22.50 16 19 C 0.03 0.90 5.44 86.65 0.47 1.37 16 20 C -0.12 -2.91 7.06 31.80 0.22 -2.69 16 21 C -0.12 -2.59 6.93 31.47 0.22 -2.37 16 22 C 0.03 0.74 6.47 86.45 0.56 1.30 16 23 C 0.04 1.08 4.07 86.33 0.35 1.43 16 24 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.08 1.35 8.02 -2.39 -0.02 1.33 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 2.28 8.12 -2.39 -0.02 2.26 16 29 H 0.06 2.53 7.04 -2.39 -0.02 2.52 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 32 H 0.00 0.03 7.55 -2.39 -0.02 0.01 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.05 2.03 7.65 -2.39 -0.02 2.01 16 35 H 0.06 1.60 5.43 -2.39 -0.01 1.58 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.38 5.73 -2.39 -0.01 1.36 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.06 5.91 -2.39 -0.01 1.05 16 43 H 0.08 2.14 6.08 -2.39 -0.01 2.12 16 Total: -1.00 -67.73 318.96 -0.61 -68.34 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.95 Total: 12.04 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.56 Total: -26.70 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -8.15 Total: -101.39 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -67.73 -0.61 -68.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.073 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds