Wall clock time and date at job start Mon Mar 30 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00344 * 2 1 4 4 C 1.46902 * 111.00042 * 123.95198 * 2 1 3 5 5 H 1.08997 * 109.38278 * 54.86830 * 4 2 1 6 6 C 1.53136 * 109.42732 * 295.00163 * 4 2 1 7 7 C 1.53708 * 108.98224 * 185.96520 * 6 4 2 8 8 H 1.09003 * 112.12362 * 188.30496 * 7 6 4 9 9 C 1.54609 * 107.81293 * 312.31398 * 7 6 4 10 10 C 1.54289 * 104.83777 * 88.56521 * 9 7 6 11 11 C 1.54600 * 104.84394 * 359.97438 * 10 9 7 12 12 H 1.08995 * 112.22185 * 146.86571 * 11 10 9 13 13 C 1.53164 * 109.53484 * 174.69015 * 4 2 1 14 14 H 1.08998 * 109.46774 * 54.15130 * 13 4 2 15 15 C 1.53003 * 109.57567 * 293.84964 * 13 4 2 16 16 C 1.50704 * 109.46932 * 65.47960 * 15 13 4 17 17 H 1.07995 * 120.00038 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99697 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47490 * 89.99761 * 20 18 16 22 22 H 1.48497 * 109.47055 * 209.99908 * 20 18 16 23 23 H 1.48502 * 109.47132 * 329.99577 * 20 18 16 24 24 N 1.48717 * 104.22707 * 25.18042 * 11 10 9 25 25 C 1.46896 * 110.99732 * 77.50744 * 24 11 10 26 26 H 1.08995 * 109.47014 * 296.05118 * 1 2 3 27 27 H 1.09001 * 109.46847 * 56.04780 * 1 2 3 28 28 H 1.08996 * 109.47479 * 176.04276 * 1 2 3 29 29 H 1.08999 * 109.47381 * 183.95403 * 3 2 1 30 30 H 1.09004 * 109.46779 * 303.95270 * 3 2 1 31 31 H 1.08994 * 109.46957 * 63.95063 * 3 2 1 32 32 H 1.09002 * 109.57072 * 66.08175 * 6 4 2 33 33 H 1.09004 * 109.56725 * 305.84551 * 6 4 2 34 34 H 1.08992 * 110.36910 * 207.40375 * 9 7 6 35 35 H 1.08999 * 110.36579 * 329.73019 * 9 7 6 36 36 H 1.08997 * 110.36617 * 118.84745 * 10 9 7 37 37 H 1.09007 * 110.36451 * 241.15824 * 10 9 7 38 38 H 1.09001 * 109.46916 * 185.47194 * 15 13 4 39 39 H 1.08994 * 109.47456 * 305.47725 * 15 13 4 40 40 H 0.96994 * 120.00453 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.47585 * 305.41126 * 25 24 11 42 42 H 1.08995 * 109.47071 * 65.41503 * 25 24 11 43 43 H 1.09004 * 109.47410 * 185.41229 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5727 -1.7705 1.1240 6 6 1.6081 -0.0680 2.4445 7 6 2.2878 -0.7914 3.6181 8 1 1.9345 -0.4292 4.5836 9 6 2.0498 -2.3087 3.4402 10 6 3.2280 -2.7941 2.5703 11 6 4.0705 -1.5260 2.3012 12 1 5.1357 -1.7460 2.2309 13 6 3.5208 -0.8561 1.0324 14 1 3.9383 0.1463 0.9385 15 6 3.9017 -1.6894 -0.1930 16 6 3.4690 -0.9695 -1.4443 17 1 2.9717 -0.0136 -1.3727 18 6 3.7081 -1.5314 -2.6804 19 7 4.3142 -2.6953 -2.7677 20 14 3.1712 -0.6394 -4.2314 21 1 4.2680 0.2464 -4.6979 22 1 2.8533 -1.6326 -5.2886 23 1 1.9653 0.1770 -3.9406 24 7 3.7555 -0.6286 3.4445 25 6 4.4775 -1.0443 4.6544 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 0.5261 -0.1039 2.5708 33 1 1.9380 0.9705 2.4154 34 1 2.0607 -2.8104 4.4077 35 1 1.1032 -2.4869 2.9301 36 1 3.8182 -3.5346 3.1102 37 1 2.8607 -3.2111 1.6326 38 1 4.9819 -1.8343 -0.2123 39 1 3.4060 -2.6587 -0.1416 40 1 4.4827 -3.0904 -3.6373 41 1 4.2624 -2.0921 4.8639 42 1 5.5489 -0.9172 4.4999 43 1 4.1568 -0.4321 5.4973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:48 Heat of formation + Delta-G solvation = 30.117675 kcal Electronic energy + Delta-G solvation = -20907.219030 eV Core-core repulsion = 18180.910726 eV Total energy + Delta-G solvation = -2726.308304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77428 -36.86839 -33.42421 -31.83105 -31.23168 -29.92621 -27.30014 -26.85983 -25.83080 -23.78059 -23.48516 -21.25925 -20.39439 -19.65668 -17.72985 -16.35776 -16.09633 -15.59920 -14.32596 -14.10835 -14.07838 -13.80781 -13.58988 -13.32447 -13.04790 -12.66936 -12.42557 -12.08260 -11.86561 -11.53660 -11.49334 -11.16244 -11.09766 -10.94440 -10.92396 -10.76388 -10.61467 -10.31966 -10.24613 -10.04939 -9.83845 -9.28247 -8.95447 -8.61968 -8.19983 -8.07028 -7.18320 -5.69768 -3.61959 3.48354 3.54804 3.59953 4.24114 4.66350 4.72718 4.98470 5.08352 5.15656 5.43371 5.53419 5.59390 5.61132 5.65031 5.69479 5.72576 5.76624 5.82789 5.93676 5.96352 6.00039 6.08832 6.11483 6.15893 6.24957 6.29972 6.38157 6.42852 6.48421 6.60907 6.66740 6.76461 6.97972 7.12296 7.32298 7.42179 7.83962 7.89603 7.94497 8.01400 8.36230 8.79692 9.47398 9.97389 11.43707 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.008273 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.929278 B = 3383.530780 C = 3951.964229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.499 5.499 3 C 0.023 3.977 4 C 0.106 3.894 5 H 0.076 0.924 6 C -0.147 4.147 7 C 0.068 3.932 8 H 0.081 0.919 9 C -0.148 4.148 10 C -0.151 4.151 11 C 0.069 3.931 12 H 0.089 0.911 13 C -0.063 4.063 14 H 0.068 0.932 15 C 0.034 3.966 16 C -0.478 4.478 17 H 0.090 0.910 18 C 0.044 3.956 19 N -0.913 5.913 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.274 1.274 24 N -0.509 5.509 25 C 0.014 3.986 26 H 0.013 0.987 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.009 0.991 39 H 0.013 0.987 40 H 0.252 0.748 41 H 0.026 0.974 42 H 0.064 0.936 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 3.661 13.081 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.220 5.220 3 C -0.125 4.125 4 C -0.003 4.003 5 H 0.094 0.906 6 C -0.186 4.186 7 C -0.041 4.041 8 H 0.099 0.901 9 C -0.187 4.187 10 C -0.190 4.190 11 C -0.040 4.040 12 H 0.107 0.893 13 C -0.082 4.082 14 H 0.087 0.913 15 C -0.004 4.004 16 C -0.517 4.517 17 H 0.107 0.893 18 C -0.153 4.153 19 N -0.556 5.556 20 Si 0.713 3.287 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.199 1.199 24 N -0.231 5.231 25 C -0.135 4.135 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.028 0.972 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.613 3.903 12.405 13.799 hybrid contribution -0.823 -0.227 0.023 0.854 sum -5.436 3.676 12.428 14.055 Atomic orbital electron populations 1.22379 0.89685 1.01449 0.99006 1.62480 1.05156 1.12726 1.41598 1.22454 1.02379 0.89220 0.98462 1.21748 0.96439 0.96615 0.85459 0.90612 1.22497 0.98579 1.01105 0.96418 1.22914 0.89213 0.93974 0.98014 0.90057 1.22924 0.99610 0.96853 0.99327 1.22976 0.96565 0.98782 1.00693 1.23201 0.98996 0.90006 0.91747 0.89315 1.21435 0.92504 1.00473 0.93750 0.91328 1.19104 0.95878 0.94544 0.90849 1.21795 1.33888 1.06441 0.89547 0.89267 1.24992 0.96382 0.95110 0.98825 1.69986 1.44627 1.17495 1.23471 0.86725 0.78788 0.79349 0.83835 1.21509 1.22081 1.19945 1.65502 1.03963 1.49248 1.04376 1.22426 0.99300 0.98460 0.93315 0.96894 0.92302 0.92054 0.89977 0.92668 0.96777 0.92615 0.91024 0.92664 0.91183 0.92728 0.89534 0.97239 0.96878 0.93856 0.95564 0.91673 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.31 60.06 0.56 0.94 16 2 N -0.50 -9.49 2.73 -242.99 -0.66 -10.15 16 3 C 0.02 0.40 7.50 60.07 0.45 0.85 16 4 C 0.11 1.91 1.23 -67.56 -0.08 1.83 16 5 H 0.08 1.46 5.52 -51.93 -0.29 1.17 16 6 C -0.15 -2.22 4.20 -26.29 -0.11 -2.33 16 7 C 0.07 0.96 3.67 -65.51 -0.24 0.72 16 8 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 9 C -0.15 -2.05 5.33 -25.21 -0.13 -2.19 16 10 C -0.15 -2.41 5.19 -25.22 -0.13 -2.55 16 11 C 0.07 1.19 3.09 -65.53 -0.20 0.99 16 12 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 13 C -0.06 -1.24 1.58 -90.19 -0.14 -1.38 16 14 H 0.07 1.45 6.15 -51.93 -0.32 1.13 16 15 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 16 C -0.48 -12.96 7.94 -34.44 -0.27 -13.24 16 17 H 0.09 2.31 3.60 -52.49 -0.19 2.12 16 18 C 0.04 1.28 5.46 -17.82 -0.10 1.18 16 19 N -0.91 -27.88 13.29 55.43 0.74 -27.14 16 20 Si 0.88 22.36 29.54 -169.99 -5.02 17.34 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 N -0.51 -7.76 5.29 -221.17 -1.17 -8.92 16 25 C 0.01 0.18 9.45 60.06 0.57 0.74 16 26 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 27 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.58 5.42 -51.93 -0.28 1.30 16 30 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 31 H 0.01 0.22 6.15 -51.93 -0.32 -0.10 16 32 H 0.06 0.78 6.83 -51.93 -0.35 0.43 16 33 H 0.07 1.14 6.09 -51.93 -0.32 0.82 16 34 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.97 7.04 -51.93 -0.37 0.61 16 36 H 0.05 0.81 8.01 -51.93 -0.42 0.39 16 37 H 0.09 1.58 5.55 -51.92 -0.29 1.29 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.01 0.35 6.72 -51.93 -0.35 0.00 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.03 0.32 6.88 -51.93 -0.36 -0.04 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -29.71 302.32 -8.63 -38.34 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.12 Total: -0.30 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 0.04 Total: -13.72 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.10 Total: -46.22 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.71 -8.63 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.460 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds