Wall clock time and date at job start Mon Mar 30 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00344 * 2 1 4 4 C 1.46902 * 111.00042 * 123.95198 * 2 1 3 5 5 H 1.08997 * 109.38278 * 54.86830 * 4 2 1 6 6 C 1.53136 * 109.42732 * 295.00163 * 4 2 1 7 7 C 1.53708 * 108.98224 * 185.96520 * 6 4 2 8 8 H 1.09003 * 112.12362 * 188.30496 * 7 6 4 9 9 C 1.54609 * 107.81293 * 312.31398 * 7 6 4 10 10 C 1.54289 * 104.83777 * 88.56521 * 9 7 6 11 11 C 1.54600 * 104.84394 * 359.97438 * 10 9 7 12 12 H 1.08995 * 112.22185 * 146.86571 * 11 10 9 13 13 C 1.53164 * 109.53484 * 174.69015 * 4 2 1 14 14 H 1.08998 * 109.46774 * 54.15130 * 13 4 2 15 15 C 1.53003 * 109.57567 * 293.84964 * 13 4 2 16 16 C 1.50704 * 109.46932 * 65.47960 * 15 13 4 17 17 H 1.07995 * 120.00038 * 359.97438 * 16 15 13 18 18 C 1.37876 * 119.99697 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47490 * 89.99761 * 20 18 16 22 22 H 1.48497 * 109.47055 * 209.99908 * 20 18 16 23 23 H 1.48502 * 109.47132 * 329.99577 * 20 18 16 24 24 N 1.48717 * 104.22707 * 25.18042 * 11 10 9 25 25 C 1.46896 * 110.99732 * 77.50744 * 24 11 10 26 26 H 1.08995 * 109.47014 * 296.05118 * 1 2 3 27 27 H 1.09001 * 109.46847 * 56.04780 * 1 2 3 28 28 H 1.08996 * 109.47479 * 176.04276 * 1 2 3 29 29 H 1.08999 * 109.47381 * 183.95403 * 3 2 1 30 30 H 1.09004 * 109.46779 * 303.95270 * 3 2 1 31 31 H 1.08994 * 109.46957 * 63.95063 * 3 2 1 32 32 H 1.09002 * 109.57072 * 66.08175 * 6 4 2 33 33 H 1.09004 * 109.56725 * 305.84551 * 6 4 2 34 34 H 1.08992 * 110.36910 * 207.40375 * 9 7 6 35 35 H 1.08999 * 110.36579 * 329.73019 * 9 7 6 36 36 H 1.08997 * 110.36617 * 118.84745 * 10 9 7 37 37 H 1.09007 * 110.36451 * 241.15824 * 10 9 7 38 38 H 1.09001 * 109.46916 * 185.47194 * 15 13 4 39 39 H 1.08994 * 109.47456 * 305.47725 * 15 13 4 40 40 H 0.96994 * 120.00453 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.47585 * 305.41126 * 25 24 11 42 42 H 1.08995 * 109.47071 * 65.41503 * 25 24 11 43 43 H 1.09004 * 109.47410 * 185.41229 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5727 -1.7705 1.1240 6 6 1.6081 -0.0680 2.4445 7 6 2.2878 -0.7914 3.6181 8 1 1.9345 -0.4292 4.5836 9 6 2.0498 -2.3087 3.4402 10 6 3.2280 -2.7941 2.5703 11 6 4.0705 -1.5260 2.3012 12 1 5.1357 -1.7460 2.2309 13 6 3.5208 -0.8561 1.0324 14 1 3.9383 0.1463 0.9385 15 6 3.9017 -1.6894 -0.1930 16 6 3.4690 -0.9695 -1.4443 17 1 2.9717 -0.0136 -1.3727 18 6 3.7081 -1.5314 -2.6804 19 7 4.3142 -2.6953 -2.7677 20 14 3.1712 -0.6394 -4.2314 21 1 4.2680 0.2464 -4.6979 22 1 2.8533 -1.6326 -5.2886 23 1 1.9653 0.1770 -3.9406 24 7 3.7555 -0.6286 3.4445 25 6 4.4775 -1.0443 4.6544 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 0.5261 -0.1039 2.5708 33 1 1.9380 0.9705 2.4154 34 1 2.0607 -2.8104 4.4077 35 1 1.1032 -2.4869 2.9301 36 1 3.8182 -3.5346 3.1102 37 1 2.8607 -3.2111 1.6326 38 1 4.9819 -1.8343 -0.2123 39 1 3.4060 -2.6587 -0.1416 40 1 4.4827 -3.0904 -3.6373 41 1 4.2624 -2.0921 4.8639 42 1 5.5489 -0.9172 4.4999 43 1 4.1568 -0.4321 5.4973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:48 Heat of formation + Delta-G solvation = 10.878899 kcal Electronic energy + Delta-G solvation = -20908.053286 eV Core-core repulsion = 18180.910726 eV Total energy + Delta-G solvation = -2727.142560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09247 -38.22883 -35.31791 -33.44481 -32.66873 -31.20518 -28.99562 -28.32323 -27.03649 -25.33073 -25.00724 -22.89628 -21.74789 -20.95724 -19.16409 -18.32102 -17.44806 -16.95235 -16.27451 -15.57651 -15.42104 -15.14133 -14.86380 -14.76676 -14.44551 -14.09374 -13.84177 -13.51935 -13.39449 -13.02969 -12.78272 -12.67334 -12.60023 -12.48641 -12.46610 -12.29661 -12.20823 -12.02710 -11.66821 -11.49938 -11.27157 -10.85785 -10.77099 -10.60411 -10.29581 -9.38092 -8.60536 -7.92730 -5.89645 1.45587 1.46601 1.58026 2.59105 3.05481 3.29321 3.45970 3.78587 3.86510 3.96603 4.24791 4.24923 4.30026 4.41999 4.46209 4.50212 4.55052 4.60198 4.64786 4.72827 4.80116 4.86191 4.89128 4.93124 5.03343 5.05324 5.11820 5.13080 5.18745 5.23051 5.26101 5.37389 5.41898 5.52781 5.77386 5.90594 6.04145 6.11276 6.25413 6.49959 6.53678 6.68045 7.29350 7.73230 9.21425 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.008273 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.929278 B = 3383.530780 C = 3951.964229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.537 5.537 3 C 0.028 3.972 4 C 0.114 3.886 5 H 0.060 0.940 6 C -0.136 4.136 7 C 0.071 3.929 8 H 0.112 0.888 9 C -0.140 4.140 10 C -0.149 4.149 11 C 0.070 3.930 12 H 0.074 0.926 13 C -0.052 4.052 14 H 0.055 0.945 15 C 0.043 3.957 16 C -0.475 4.475 17 H 0.105 0.895 18 C -0.018 4.018 19 N -0.955 5.955 20 Si 0.946 3.054 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.261 1.261 24 N -0.517 5.517 25 C 0.014 3.986 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.054 0.946 38 H -0.026 1.026 39 H -0.014 1.014 40 H 0.249 0.751 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 5.225 15.081 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.259 5.259 3 C -0.119 4.119 4 C 0.005 3.995 5 H 0.078 0.922 6 C -0.176 4.176 7 C -0.038 4.038 8 H 0.130 0.870 9 C -0.179 4.179 10 C -0.188 4.188 11 C -0.040 4.040 12 H 0.093 0.907 13 C -0.071 4.071 14 H 0.073 0.927 15 C 0.005 3.995 16 C -0.513 4.513 17 H 0.122 0.878 18 C -0.211 4.211 19 N -0.600 5.600 20 Si 0.774 3.226 21 H -0.210 1.210 22 H -0.225 1.225 23 H -0.185 1.185 24 N -0.239 5.239 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.073 0.927 38 H -0.008 1.008 39 H 0.004 0.996 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.344 5.491 14.423 16.686 hybrid contribution -0.250 -0.728 -0.574 0.960 sum -6.593 4.763 13.850 16.061 Atomic orbital electron populations 1.22357 0.87794 1.01526 1.00454 1.62312 1.07172 1.13596 1.42826 1.22353 1.00780 0.88916 0.99878 1.21543 0.94356 0.96306 0.87263 0.92191 1.22375 0.99852 1.00452 0.94887 1.23026 0.88213 0.93781 0.98812 0.87040 1.22874 0.98234 0.96955 0.99806 1.22894 0.97601 0.98372 0.99926 1.22982 0.98276 0.90918 0.91788 0.90731 1.21180 0.94545 0.98583 0.92829 0.92674 1.18939 0.93136 0.94134 0.93252 1.22313 1.32248 1.06661 0.90097 0.87780 1.25835 0.97046 0.95957 1.02293 1.70148 1.46675 1.19366 1.23841 0.85711 0.78801 0.78146 0.79925 1.21016 1.22514 1.18537 1.65422 1.05145 1.48694 1.04653 1.22490 0.99076 0.99268 0.92607 0.94423 0.91868 0.92568 0.92379 0.92151 0.94497 0.90661 0.91278 0.90299 0.91181 0.91673 0.92716 1.00816 0.99564 0.94262 0.94978 0.91793 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.31 127.69 1.19 1.99 16 2 N -0.54 -19.86 2.73 -922.70 -2.52 -22.38 16 3 C 0.03 0.96 7.50 127.69 0.96 1.92 16 4 C 0.11 4.02 1.23 45.02 0.06 4.08 16 5 H 0.06 2.31 5.52 -2.39 -0.01 2.30 16 6 C -0.14 -3.72 4.20 30.88 0.13 -3.59 16 7 C 0.07 1.74 3.67 45.35 0.17 1.91 16 8 H 0.11 2.19 8.11 -2.39 -0.02 2.17 16 9 C -0.14 -3.49 5.33 31.58 0.17 -3.32 16 10 C -0.15 -4.71 5.19 31.58 0.16 -4.55 16 11 C 0.07 2.40 3.09 45.33 0.14 2.54 16 12 H 0.07 2.73 8.10 -2.39 -0.02 2.72 16 13 C -0.05 -2.12 1.58 -10.52 -0.02 -2.14 16 14 H 0.05 2.38 6.15 -2.39 -0.01 2.36 16 15 C 0.04 2.25 4.26 29.85 0.13 2.37 16 16 C -0.47 -26.45 7.94 25.60 0.20 -26.25 16 17 H 0.10 5.42 3.60 -2.91 -0.01 5.41 16 18 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 19 N -0.96 -60.64 13.29 21.45 0.28 -60.36 16 20 Si 0.95 46.68 29.54 68.60 2.03 48.71 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 23 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 24 N -0.52 -14.60 5.29 -853.65 -4.51 -19.12 16 25 C 0.01 0.31 9.45 127.69 1.21 1.52 16 26 H 0.04 0.94 6.57 -2.39 -0.02 0.93 16 27 H 0.06 1.82 8.12 -2.39 -0.02 1.80 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 2.22 5.42 -2.39 -0.01 2.20 16 30 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 31 H 0.04 1.06 6.15 -2.39 -0.01 1.05 16 32 H 0.07 1.80 6.83 -2.39 -0.02 1.78 16 33 H 0.07 1.96 6.09 -2.38 -0.01 1.94 16 34 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.07 1.77 7.04 -2.39 -0.02 1.76 16 36 H 0.06 1.89 8.01 -2.39 -0.02 1.87 16 37 H 0.05 2.08 5.55 -2.38 -0.01 2.06 16 38 H -0.03 -1.55 8.14 -2.39 -0.02 -1.57 16 39 H -0.01 -0.80 6.72 -2.39 -0.02 -0.82 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.03 0.68 6.88 -2.39 -0.02 0.67 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.92 302.32 1.21 -64.71 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.98 Total: 12.58 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 4.95 Total: -24.14 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -6.75 Total: -101.86 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -65.92 1.21 -64.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.587 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds