Wall clock time and date at job start Mon Mar 30 2020 04:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00169 * 2 1 4 4 C 1.46904 * 111.00037 * 123.95218 * 2 1 3 5 5 H 1.09001 * 109.42678 * 314.74608 * 4 2 1 6 6 C 1.53139 * 109.42992 * 194.85575 * 4 2 1 7 7 C 1.53714 * 108.88467 * 185.95746 * 6 4 2 8 8 H 1.08998 * 112.11941 * 188.36454 * 7 6 4 9 9 C 1.54608 * 107.80735 * 312.37358 * 7 6 4 10 10 C 1.54287 * 104.84066 * 88.56901 * 9 7 6 11 11 C 1.54605 * 104.84339 * 359.97438 * 10 9 7 12 12 H 1.08995 * 112.22029 * 147.48809 * 11 10 9 13 13 C 1.53136 * 109.38579 * 74.61247 * 4 2 1 14 14 H 1.09001 * 109.56986 * 293.89100 * 13 4 2 15 15 C 1.52997 * 109.56648 * 54.24936 * 13 4 2 16 16 C 1.50700 * 109.47258 * 292.06973 * 15 13 4 17 17 H 1.08001 * 119.99679 * 354.78858 * 16 15 13 18 18 C 1.37868 * 120.00147 * 174.79406 * 16 15 13 19 19 N 1.31518 * 120.00339 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47026 * 59.99598 * 20 18 16 22 22 H 1.48491 * 109.47476 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46706 * 300.00111 * 20 18 16 24 24 N 1.48712 * 107.24184 * 64.08713 * 7 6 4 25 25 C 1.46896 * 110.99759 * 168.34286 * 24 7 6 26 26 H 1.08998 * 109.47272 * 296.05023 * 1 2 3 27 27 H 1.09002 * 109.47302 * 56.05404 * 1 2 3 28 28 H 1.09004 * 109.47535 * 176.04712 * 1 2 3 29 29 H 1.09003 * 109.47136 * 191.08996 * 3 2 1 30 30 H 1.09004 * 109.46745 * 311.08403 * 3 2 1 31 31 H 1.08995 * 109.47514 * 71.08330 * 3 2 1 32 32 H 1.09001 * 109.56878 * 66.13156 * 6 4 2 33 33 H 1.09001 * 109.66121 * 305.83299 * 6 4 2 34 34 H 1.08997 * 110.36651 * 329.72789 * 9 7 6 35 35 H 1.08998 * 110.45602 * 207.45156 * 9 7 6 36 36 H 1.09009 * 110.36441 * 241.15557 * 10 9 7 37 37 H 1.08997 * 110.46212 * 118.88493 * 10 9 7 38 38 H 1.09005 * 109.46960 * 52.06949 * 15 13 4 39 39 H 1.09001 * 109.47078 * 172.06542 * 15 13 4 40 40 H 0.97001 * 120.00591 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.46880 * 174.46354 * 25 24 7 42 42 H 1.09001 * 109.47471 * 294.46134 * 25 24 7 43 43 H 1.08995 * 109.47499 * 54.46776 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.4497 -0.4942 2.0413 6 6 3.4811 -0.4450 1.3240 7 6 4.0546 -1.3608 2.4173 8 1 5.0702 -1.0803 2.6965 9 6 3.0857 -1.3234 3.6215 10 6 2.0624 -2.4433 3.3403 11 6 2.5056 -3.0552 1.9914 12 1 2.2901 -4.1220 1.9321 13 6 1.8197 -2.2630 0.8674 14 1 0.7577 -2.5076 0.8439 15 6 2.4600 -2.6198 -0.4756 16 6 1.6731 -1.9834 -1.5922 17 1 0.7567 -1.4552 -1.3741 18 6 2.1230 -2.0757 -2.8922 19 7 3.2391 -2.7187 -3.1578 20 14 1.1472 -1.2875 -4.2764 21 1 1.0402 0.1741 -4.0366 22 1 1.8387 -1.5273 -5.5684 23 1 -0.2127 -1.8821 -4.3243 24 7 3.9610 -2.7578 1.9161 25 6 4.7308 -3.6750 2.7669 26 1 -0.3634 0.4513 0.9232 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0671 1.3492 -0.1977 30 1 1.4951 1.9526 -0.7746 31 1 1.8146 1.8300 0.9721 32 1 3.5948 0.5968 1.6236 33 1 4.0134 -0.6161 0.3883 34 1 2.5849 -0.3568 3.6756 35 1 3.6225 -1.5242 4.5487 36 1 1.0583 -2.0273 3.2562 37 1 2.0955 -3.1962 4.1278 38 1 3.4858 -2.2517 -0.4982 39 1 2.4597 -3.7025 -0.6020 40 1 3.5558 -2.7833 -4.0723 41 1 4.5664 -4.7008 2.4371 42 1 5.7916 -3.4352 2.6929 43 1 4.4059 -3.5696 3.8019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:51 Heat of formation + Delta-G solvation = 36.540427 kcal Electronic energy + Delta-G solvation = -21060.455301 eV Core-core repulsion = 18334.425508 eV Total energy + Delta-G solvation = -2726.029792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69032 -36.72973 -33.05007 -31.78999 -31.14032 -30.31238 -27.43883 -26.53005 -25.77208 -23.50637 -23.24350 -21.13580 -20.39033 -20.01199 -17.20488 -16.35256 -16.04317 -15.61221 -14.26471 -14.07788 -14.01958 -13.87087 -13.57913 -13.26843 -12.63239 -12.46452 -12.25161 -12.12721 -11.80960 -11.64630 -11.35622 -11.15533 -11.09433 -11.00307 -10.78435 -10.71017 -10.46044 -10.33127 -10.18616 -10.10928 -9.61800 -9.26464 -8.83381 -8.44897 -8.01981 -7.82151 -7.13493 -5.55256 -3.44231 3.54321 3.59026 3.60868 4.35512 4.67312 4.80986 4.97550 5.07979 5.21865 5.54979 5.59310 5.64215 5.68536 5.73237 5.73938 5.77993 5.83471 5.88110 5.90322 6.03713 6.04856 6.12675 6.16514 6.17538 6.20570 6.28874 6.38506 6.50256 6.53499 6.59543 6.69375 6.81170 6.94645 7.31524 7.44557 7.61920 7.91832 8.00927 8.13261 8.36739 8.51141 8.93943 9.56068 10.09323 11.57841 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.008964 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.668717 B = 3122.900932 C = 3679.895874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.493 5.493 3 C 0.027 3.973 4 C 0.107 3.893 5 H 0.020 0.980 6 C -0.105 4.105 7 C 0.066 3.934 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.151 4.151 11 C 0.069 3.931 12 H 0.087 0.913 13 C -0.065 4.065 14 H 0.053 0.947 15 C 0.049 3.951 16 C -0.459 4.459 17 H 0.071 0.929 18 C 0.045 3.955 19 N -0.912 5.912 20 Si 0.877 3.123 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.286 1.286 24 N -0.488 5.488 25 C 0.015 3.985 26 H 0.002 0.998 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.005 0.995 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.038 0.962 39 H -0.002 1.002 40 H 0.250 0.750 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 3.752 13.586 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.215 5.215 3 C -0.122 4.122 4 C -0.001 4.001 5 H 0.038 0.962 6 C -0.143 4.143 7 C -0.044 4.044 8 H 0.104 0.896 9 C -0.188 4.188 10 C -0.190 4.190 11 C -0.040 4.040 12 H 0.105 0.895 13 C -0.084 4.084 14 H 0.072 0.928 15 C 0.012 3.988 16 C -0.498 4.498 17 H 0.089 0.911 18 C -0.152 4.152 19 N -0.555 5.555 20 Si 0.707 3.293 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.212 1.212 24 N -0.209 5.209 25 C -0.134 4.134 26 H 0.021 0.979 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.313 3.420 12.434 12.900 hybrid contribution -1.097 0.967 0.771 1.653 sum -1.410 4.388 13.205 13.987 Atomic orbital electron populations 1.22353 0.88804 1.02281 0.98159 1.62378 1.06127 1.10813 1.42163 1.22395 1.01419 0.90314 0.98058 1.21622 0.93942 0.95145 0.89389 0.96240 1.21889 0.96300 0.96286 0.99831 1.23021 0.97762 0.90671 0.92904 0.89630 1.22928 0.97802 0.99226 0.98799 1.22975 0.99583 0.97664 0.98808 1.23188 0.87818 0.99364 0.93668 0.89523 1.21440 0.98102 0.91623 0.97265 0.92836 1.18912 0.97120 0.95037 0.87765 1.21547 1.08079 1.29616 0.90570 0.91143 1.24881 0.95276 0.96679 0.98361 1.69980 1.22071 1.44823 1.18615 0.86913 0.80046 0.79930 0.82415 1.20841 1.22257 1.21192 1.65444 1.07432 1.01089 1.46974 1.22447 0.98539 0.97701 0.94727 0.97928 0.92338 0.90631 0.91402 0.92588 0.97643 0.92997 0.88767 0.91505 0.92632 0.91332 0.92713 0.94399 0.98380 0.94034 0.91682 0.91940 0.96155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 7.90 60.06 0.47 1.05 16 2 N -0.49 -9.66 2.43 -243.01 -0.59 -10.25 16 3 C 0.03 0.46 8.45 60.06 0.51 0.96 16 4 C 0.11 1.95 1.36 -67.57 -0.09 1.86 16 5 H 0.02 0.34 5.35 -51.93 -0.28 0.06 16 6 C -0.11 -1.83 3.41 -26.29 -0.09 -1.92 16 7 C 0.07 1.02 3.67 -65.49 -0.24 0.77 16 8 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 9 C -0.15 -2.00 5.29 -25.21 -0.13 -2.13 16 10 C -0.15 -2.14 5.33 -25.21 -0.13 -2.28 16 11 C 0.07 1.18 3.19 -65.50 -0.21 0.97 16 12 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 13 C -0.07 -1.30 1.72 -90.20 -0.15 -1.46 16 14 H 0.05 1.09 7.11 -51.93 -0.37 0.72 16 15 C 0.05 1.24 4.00 -27.88 -0.11 1.13 16 16 C -0.46 -12.55 7.35 -34.44 -0.25 -12.80 16 17 H 0.07 1.83 3.76 -52.49 -0.20 1.64 16 18 C 0.04 1.30 5.46 -17.82 -0.10 1.20 16 19 N -0.91 -28.30 13.29 55.43 0.74 -27.56 16 20 Si 0.88 22.55 29.54 -169.99 -5.02 17.53 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 N -0.49 -8.39 4.38 -221.12 -0.97 -9.36 16 25 C 0.01 0.21 9.46 60.06 0.57 0.78 16 26 H 0.00 0.04 8.09 -51.93 -0.42 -0.38 16 27 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 28 H 0.08 1.42 5.86 -51.93 -0.30 1.11 16 29 H 0.07 1.18 6.82 -51.93 -0.35 0.82 16 30 H 0.06 0.93 7.99 -51.93 -0.42 0.51 16 31 H 0.01 0.08 8.04 -51.93 -0.42 -0.34 16 32 H 0.05 0.80 6.88 -51.93 -0.36 0.44 16 33 H 0.09 1.99 6.69 -51.93 -0.35 1.64 16 34 H 0.07 0.88 7.03 -51.93 -0.37 0.52 16 35 H 0.05 0.67 8.02 -51.93 -0.42 0.25 16 36 H 0.07 0.98 7.04 -51.92 -0.37 0.61 16 37 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.04 1.06 5.96 -51.93 -0.31 0.75 16 39 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.02 0.26 6.89 -51.93 -0.36 -0.10 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -30.63 304.14 -8.58 -39.21 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.36 Total: -2.30 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 0.04 Total: -11.86 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.82 Total: -47.17 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.63 -8.58 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.755 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds