Wall clock time and date at job start Mon Mar 30 2020 04:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00169 * 2 1 4 4 C 1.46904 * 111.00037 * 123.95218 * 2 1 3 5 5 H 1.09001 * 109.42678 * 314.74608 * 4 2 1 6 6 C 1.53139 * 109.42992 * 194.85575 * 4 2 1 7 7 C 1.53714 * 108.88467 * 185.95746 * 6 4 2 8 8 H 1.08998 * 112.11941 * 188.36454 * 7 6 4 9 9 C 1.54608 * 107.80735 * 312.37358 * 7 6 4 10 10 C 1.54287 * 104.84066 * 88.56901 * 9 7 6 11 11 C 1.54605 * 104.84339 * 359.97438 * 10 9 7 12 12 H 1.08995 * 112.22029 * 147.48809 * 11 10 9 13 13 C 1.53136 * 109.38579 * 74.61247 * 4 2 1 14 14 H 1.09001 * 109.56986 * 293.89100 * 13 4 2 15 15 C 1.52997 * 109.56648 * 54.24936 * 13 4 2 16 16 C 1.50700 * 109.47258 * 292.06973 * 15 13 4 17 17 H 1.08001 * 119.99679 * 354.78858 * 16 15 13 18 18 C 1.37868 * 120.00147 * 174.79406 * 16 15 13 19 19 N 1.31518 * 120.00339 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47026 * 59.99598 * 20 18 16 22 22 H 1.48491 * 109.47476 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46706 * 300.00111 * 20 18 16 24 24 N 1.48712 * 107.24184 * 64.08713 * 7 6 4 25 25 C 1.46896 * 110.99759 * 168.34286 * 24 7 6 26 26 H 1.08998 * 109.47272 * 296.05023 * 1 2 3 27 27 H 1.09002 * 109.47302 * 56.05404 * 1 2 3 28 28 H 1.09004 * 109.47535 * 176.04712 * 1 2 3 29 29 H 1.09003 * 109.47136 * 191.08996 * 3 2 1 30 30 H 1.09004 * 109.46745 * 311.08403 * 3 2 1 31 31 H 1.08995 * 109.47514 * 71.08330 * 3 2 1 32 32 H 1.09001 * 109.56878 * 66.13156 * 6 4 2 33 33 H 1.09001 * 109.66121 * 305.83299 * 6 4 2 34 34 H 1.08997 * 110.36651 * 329.72789 * 9 7 6 35 35 H 1.08998 * 110.45602 * 207.45156 * 9 7 6 36 36 H 1.09009 * 110.36441 * 241.15557 * 10 9 7 37 37 H 1.08997 * 110.46212 * 118.88493 * 10 9 7 38 38 H 1.09005 * 109.46960 * 52.06949 * 15 13 4 39 39 H 1.09001 * 109.47078 * 172.06542 * 15 13 4 40 40 H 0.97001 * 120.00591 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.46880 * 174.46354 * 25 24 7 42 42 H 1.09001 * 109.47471 * 294.46134 * 25 24 7 43 43 H 1.08995 * 109.47499 * 54.46776 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.4497 -0.4942 2.0413 6 6 3.4811 -0.4450 1.3240 7 6 4.0546 -1.3608 2.4173 8 1 5.0702 -1.0803 2.6965 9 6 3.0857 -1.3234 3.6215 10 6 2.0624 -2.4433 3.3403 11 6 2.5056 -3.0552 1.9914 12 1 2.2901 -4.1220 1.9321 13 6 1.8197 -2.2630 0.8674 14 1 0.7577 -2.5076 0.8439 15 6 2.4600 -2.6198 -0.4756 16 6 1.6731 -1.9834 -1.5922 17 1 0.7567 -1.4552 -1.3741 18 6 2.1230 -2.0757 -2.8922 19 7 3.2391 -2.7187 -3.1578 20 14 1.1472 -1.2875 -4.2764 21 1 1.0402 0.1741 -4.0366 22 1 1.8387 -1.5273 -5.5684 23 1 -0.2127 -1.8821 -4.3243 24 7 3.9610 -2.7578 1.9161 25 6 4.7308 -3.6750 2.7669 26 1 -0.3634 0.4513 0.9232 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0671 1.3492 -0.1977 30 1 1.4951 1.9526 -0.7746 31 1 1.8146 1.8300 0.9721 32 1 3.5948 0.5968 1.6236 33 1 4.0134 -0.6161 0.3883 34 1 2.5849 -0.3568 3.6756 35 1 3.6225 -1.5242 4.5487 36 1 1.0583 -2.0273 3.2562 37 1 2.0955 -3.1962 4.1278 38 1 3.4858 -2.2517 -0.4982 39 1 2.4597 -3.7025 -0.6020 40 1 3.5558 -2.7833 -4.0723 41 1 4.5664 -4.7008 2.4371 42 1 5.7916 -3.4352 2.6929 43 1 4.4059 -3.5696 3.8019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:51 Heat of formation + Delta-G solvation = 17.143132 kcal Electronic energy + Delta-G solvation = -21061.296430 eV Core-core repulsion = 18334.425508 eV Total energy + Delta-G solvation = -2726.870922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.02013 -38.12892 -35.01764 -33.30364 -32.70051 -31.58485 -29.04626 -28.15763 -27.00416 -25.22395 -24.64141 -22.87571 -21.76466 -21.20777 -18.68593 -18.23399 -17.50129 -17.00489 -16.24754 -15.59608 -15.38253 -15.19346 -14.93502 -14.64645 -14.15848 -13.97842 -13.67715 -13.43041 -13.36150 -12.95553 -12.82561 -12.79187 -12.58003 -12.51560 -12.41566 -12.28179 -12.15246 -11.99534 -11.70009 -11.42662 -11.16129 -10.86008 -10.63405 -10.46524 -10.18913 -9.13214 -8.59941 -7.81041 -5.74148 1.46340 1.49186 1.54701 2.64542 3.13725 3.28186 3.57482 3.79387 3.93109 4.01781 4.22832 4.32891 4.37260 4.45865 4.50093 4.53836 4.54170 4.58021 4.63707 4.75058 4.78838 4.83615 4.91672 4.97806 5.02572 5.07238 5.14127 5.15333 5.18636 5.25363 5.28431 5.36255 5.46466 5.67683 5.94041 6.09714 6.16197 6.31825 6.40614 6.55939 6.59434 6.77022 7.36440 7.82864 9.32682 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.008964 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.668717 B = 3122.900932 C = 3679.895874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.031 3.969 4 C 0.115 3.885 5 H 0.044 0.956 6 C -0.100 4.100 7 C 0.066 3.934 8 H 0.100 0.900 9 C -0.138 4.138 10 C -0.141 4.141 11 C 0.067 3.933 12 H 0.077 0.923 13 C -0.061 4.061 14 H 0.047 0.953 15 C 0.063 3.937 16 C -0.450 4.450 17 H 0.086 0.914 18 C -0.018 4.018 19 N -0.956 5.956 20 Si 0.938 3.062 21 H -0.272 1.272 22 H -0.303 1.303 23 H -0.275 1.275 24 N -0.525 5.525 25 C 0.019 3.981 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.007 0.993 39 H -0.044 1.044 40 H 0.245 0.755 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 5.345 16.042 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.257 5.257 3 C -0.117 4.117 4 C 0.007 3.993 5 H 0.061 0.939 6 C -0.138 4.138 7 C -0.044 4.044 8 H 0.118 0.882 9 C -0.176 4.176 10 C -0.180 4.180 11 C -0.043 4.043 12 H 0.095 0.905 13 C -0.080 4.080 14 H 0.065 0.935 15 C 0.026 3.974 16 C -0.489 4.489 17 H 0.104 0.896 18 C -0.210 4.210 19 N -0.602 5.602 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.230 1.230 23 H -0.201 1.201 24 N -0.247 5.247 25 C -0.130 4.130 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.025 0.975 39 H -0.026 1.026 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.443 5.027 14.909 15.799 hybrid contribution -0.729 0.440 -0.002 0.852 sum -2.173 5.467 14.906 16.025 Atomic orbital electron populations 1.22283 0.87899 1.01514 0.99599 1.62187 1.07330 1.12583 1.43631 1.22325 1.00567 0.89188 0.99593 1.21527 0.94655 0.93260 0.89848 0.93867 1.21807 0.95280 0.98189 0.98492 1.23061 0.99131 0.89128 0.93032 0.88184 1.22857 0.97026 0.99291 0.98472 1.22883 0.99831 0.98283 0.96994 1.23058 0.88127 0.98578 0.94509 0.90500 1.21282 0.97323 0.94059 0.95360 0.93472 1.18649 0.95848 0.91837 0.91019 1.22047 1.08099 1.27922 0.90854 0.89581 1.25678 0.96353 0.97811 1.01180 1.70161 1.24225 1.47172 1.18614 0.85904 0.78852 0.79440 0.79110 1.19790 1.22992 1.20096 1.65348 1.07575 1.02688 1.49137 1.22426 0.98541 0.96673 0.95334 0.95178 0.92312 0.92254 0.92573 0.92376 0.94963 0.90792 0.93575 0.90545 0.90289 0.91018 0.90745 0.97469 1.02614 0.94661 0.92407 0.91259 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 7.90 127.69 1.01 2.18 16 2 N -0.53 -20.24 2.43 -922.74 -2.24 -22.48 16 3 C 0.03 1.01 8.45 127.69 1.08 2.09 16 4 C 0.12 4.01 1.36 45.01 0.06 4.07 16 5 H 0.04 1.34 5.35 -2.39 -0.01 1.33 16 6 C -0.10 -3.35 3.41 30.88 0.11 -3.25 16 7 C 0.07 1.88 3.67 45.35 0.17 2.04 16 8 H 0.10 2.55 8.11 -2.39 -0.02 2.54 16 9 C -0.14 -3.11 5.29 31.58 0.17 -2.94 16 10 C -0.14 -3.51 5.33 31.58 0.17 -3.34 16 11 C 0.07 2.24 3.19 45.33 0.14 2.38 16 12 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 13 C -0.06 -2.45 1.72 -10.52 -0.02 -2.46 16 14 H 0.05 1.92 7.11 -2.39 -0.02 1.90 16 15 C 0.06 3.38 4.00 29.85 0.12 3.50 16 16 C -0.45 -25.20 7.35 25.60 0.19 -25.02 16 17 H 0.09 4.49 3.76 -2.91 -0.01 4.48 16 18 C -0.02 -1.07 5.46 84.65 0.46 -0.61 16 19 N -0.96 -61.88 13.29 21.44 0.28 -61.59 16 20 Si 0.94 47.15 29.54 68.60 2.03 49.18 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.30 -15.48 7.11 99.48 0.71 -14.78 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 24 N -0.53 -17.78 4.38 -853.48 -3.74 -21.52 16 25 C 0.02 0.50 9.46 127.69 1.21 1.71 16 26 H 0.03 0.84 8.09 -2.39 -0.02 0.82 16 27 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 28 H 0.06 2.15 5.86 -2.39 -0.01 2.14 16 29 H 0.06 1.91 6.82 -2.39 -0.02 1.89 16 30 H 0.06 1.81 7.99 -2.38 -0.02 1.79 16 31 H 0.03 0.86 8.04 -2.39 -0.02 0.84 16 32 H 0.07 2.11 6.88 -2.39 -0.02 2.09 16 33 H 0.05 2.00 6.69 -2.39 -0.02 1.99 16 34 H 0.08 1.62 7.03 -2.39 -0.02 1.61 16 35 H 0.08 1.48 8.02 -2.39 -0.02 1.46 16 36 H 0.07 1.76 7.04 -2.38 -0.02 1.74 16 37 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.01 0.42 5.96 -2.38 -0.01 0.40 16 39 H -0.04 -2.69 8.14 -2.39 -0.02 -2.71 16 40 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 0.95 6.89 -2.39 -0.02 0.93 16 Total: -1.00 -68.73 304.14 2.16 -66.57 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.97 Total: 9.49 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.86 Total: -19.64 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -5.69 Total: -105.59 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -68.73 2.16 -66.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.710 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds