Wall clock time and date at job start Mon Mar 30 2020 04:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99780 * 2 1 4 4 C 1.46896 * 111.00128 * 123.95369 * 2 1 3 5 5 H 1.08996 * 109.42955 * 280.68734 * 4 2 1 6 6 C 1.53136 * 109.42903 * 40.53613 * 4 2 1 7 7 C 1.53713 * 108.89101 * 66.05894 * 6 4 2 8 8 H 1.08992 * 112.61706 * 188.04025 * 7 6 4 9 9 C 1.54604 * 107.80943 * 312.38290 * 7 6 4 10 10 C 1.54290 * 104.84080 * 88.55621 * 9 7 6 11 11 C 1.54603 * 104.84409 * 359.97438 * 10 9 7 12 12 H 1.09004 * 112.21464 * 147.48059 * 11 10 9 13 13 C 1.53140 * 109.42480 * 160.79687 * 4 2 1 14 14 H 1.09006 * 109.56434 * 174.11537 * 13 4 2 15 15 C 1.52994 * 109.57147 * 53.76050 * 13 4 2 16 16 C 1.50703 * 109.47329 * 58.97098 * 15 13 4 17 17 H 1.07995 * 119.99650 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00177 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46866 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47070 * 119.99672 * 20 18 16 23 23 H 1.48492 * 109.47055 * 239.99913 * 20 18 16 24 24 N 1.48719 * 107.23476 * 64.09230 * 7 6 4 25 25 C 1.46895 * 110.99982 * 168.34572 * 24 7 6 26 26 H 1.09002 * 109.47056 * 300.28303 * 1 2 3 27 27 H 1.08997 * 109.47088 * 60.27954 * 1 2 3 28 28 H 1.08994 * 109.47167 * 180.28500 * 1 2 3 29 29 H 1.09007 * 109.46763 * 223.83327 * 3 2 1 30 30 H 1.09000 * 109.47118 * 343.83054 * 3 2 1 31 31 H 1.09000 * 109.47018 * 103.83527 * 3 2 1 32 32 H 1.08995 * 109.56764 * 185.88610 * 6 4 2 33 33 H 1.09002 * 109.56672 * 306.24378 * 6 4 2 34 34 H 1.08993 * 110.36690 * 329.71106 * 9 7 6 35 35 H 1.09005 * 110.36119 * 207.39263 * 9 7 6 36 36 H 1.08996 * 110.35881 * 241.15423 * 10 9 7 37 37 H 1.09004 * 110.45303 * 118.88916 * 10 9 7 38 38 H 1.08995 * 109.47503 * 178.97273 * 15 13 4 39 39 H 1.09008 * 109.47074 * 298.97260 * 15 13 4 40 40 H 0.97005 * 119.99866 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47417 * 174.46715 * 25 24 7 42 42 H 1.09006 * 109.47155 * 294.46235 * 25 24 7 43 43 H 1.09003 * 109.47637 * 54.46484 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.9475 -0.1553 2.0391 6 6 1.1534 -2.0298 1.3341 7 6 1.3475 -2.9511 0.1190 8 1 0.6699 -3.8047 0.1278 9 6 1.1886 -2.0915 -1.1562 10 6 2.6042 -1.5512 -1.4475 11 6 3.4896 -2.1328 -0.3214 12 1 4.5074 -2.3304 -0.6579 13 6 3.4513 -1.1525 0.8612 14 1 3.8764 -1.6292 1.7445 15 6 4.2573 0.1007 0.5143 16 6 4.1853 1.0774 1.6597 17 1 3.6213 0.8289 2.5465 18 6 4.8393 2.2883 1.5754 19 7 5.5265 2.5906 0.4955 20 14 4.7494 3.4992 2.9948 21 1 3.9203 2.9241 4.0843 22 1 6.1183 3.7674 3.5042 23 1 4.1387 4.7685 2.5247 24 7 2.7755 -3.3662 0.1044 25 6 2.9961 -4.4594 -0.8516 26 1 -0.3633 0.5182 0.8875 27 1 -0.3633 0.5095 -0.8925 28 1 -0.3633 -1.0276 0.0051 29 1 2.8177 1.4450 -0.7118 30 1 1.2042 2.0644 -0.2862 31 1 2.3550 1.6226 0.9979 32 1 1.4751 -2.5458 2.2386 33 1 0.1015 -1.7577 1.4214 34 1 0.4981 -1.2680 -0.9750 35 1 0.8388 -2.7055 -1.9863 36 1 2.6095 -0.4619 -1.4095 37 1 2.9514 -1.8978 -2.4209 38 1 5.2969 -0.1738 0.3357 39 1 3.8440 0.5617 -0.3829 40 1 5.9869 3.4424 0.4363 41 1 4.0622 -4.6773 -0.9147 42 1 2.4628 -5.3489 -0.5158 43 1 2.6271 -4.1635 -1.8336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:54 Heat of formation + Delta-G solvation = 95.122374 kcal Electronic energy + Delta-G solvation = -21374.115854 eV Core-core repulsion = 18650.626366 eV Total energy + Delta-G solvation = -2723.489488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.15801 -36.39535 -33.93583 -31.74890 -31.25603 -30.22945 -27.45447 -26.63758 -25.46228 -23.70520 -23.30523 -21.23654 -20.34712 -19.25522 -17.84051 -16.74773 -16.00926 -15.56716 -14.47106 -14.21970 -14.03584 -13.76071 -13.47783 -13.04719 -12.54635 -12.25354 -12.23442 -12.09072 -11.65760 -11.57272 -11.31805 -11.22863 -11.12548 -11.05786 -10.79539 -10.64951 -10.29476 -10.03577 -9.85495 -9.74237 -9.19266 -9.07509 -8.90481 -8.80230 -8.29786 -7.94487 -7.15978 -6.00063 -3.95056 3.28229 3.37573 3.39942 4.42086 4.52599 4.68867 5.25061 5.31625 5.34917 5.50808 5.55349 5.63938 5.69645 5.81750 5.89115 5.91383 5.95967 6.02502 6.10695 6.13727 6.16322 6.24716 6.33339 6.39818 6.53155 6.64588 6.77101 6.81598 6.91561 6.92371 7.08982 7.17182 7.28873 7.38247 7.56828 7.65505 7.77022 7.84731 7.92939 7.97523 8.14397 8.46755 9.06161 9.60922 11.10336 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029722 B = 0.008109 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.847202 B = 3452.090123 C = 3767.615494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.521 5.521 3 C -0.004 4.004 4 C 0.098 3.902 5 H 0.049 0.951 6 C -0.115 4.115 7 C 0.066 3.934 8 H 0.073 0.927 9 C -0.175 4.175 10 C -0.134 4.134 11 C 0.071 3.929 12 H 0.077 0.923 13 C -0.056 4.056 14 H 0.060 0.940 15 C 0.006 3.994 16 C -0.504 4.504 17 H 0.053 0.947 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.879 3.121 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 N -0.514 5.514 25 C 0.017 3.983 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.020 0.980 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.028 0.972 36 H 0.120 0.880 37 H 0.023 0.977 38 H 0.009 0.991 39 H 0.051 0.949 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 -8.084 -2.443 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.246 5.246 3 C -0.150 4.150 4 C -0.009 4.009 5 H 0.067 0.933 6 C -0.153 4.153 7 C -0.043 4.043 8 H 0.091 0.909 9 C -0.213 4.213 10 C -0.172 4.172 11 C -0.037 4.037 12 H 0.095 0.905 13 C -0.075 4.075 14 H 0.079 0.921 15 C -0.030 4.030 16 C -0.542 4.542 17 H 0.071 0.929 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.707 3.293 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 N -0.236 5.236 25 C -0.132 4.132 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.047 0.953 36 H 0.138 0.862 37 H 0.042 0.958 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.870 -8.390 -2.402 12.443 hybrid contribution -0.399 1.231 0.627 1.438 sum -9.269 -7.159 -1.776 11.845 Atomic orbital electron populations 1.22766 0.90775 1.01181 0.99858 1.63214 1.04761 1.14715 1.41895 1.23376 0.98382 0.86325 1.06966 1.21688 0.95060 0.92480 0.91721 0.93282 1.21998 0.99056 0.96261 0.97960 1.22898 0.90058 0.95738 0.95615 0.90854 1.23901 1.01208 1.00667 0.95550 1.23115 0.93253 1.05550 0.95331 1.23063 0.96479 0.88551 0.95653 0.90523 1.21258 0.93899 0.96370 0.95961 0.92134 1.19728 0.94499 0.90671 0.98146 1.21156 1.30193 1.00774 1.02071 0.92901 1.24936 0.95657 0.98200 0.95403 1.69961 1.32868 1.22915 1.27058 0.86737 0.77847 0.81561 0.83112 1.19920 1.21104 1.21140 1.65493 1.06768 1.06459 1.44888 1.22368 1.01202 0.94919 0.94734 0.96444 0.92068 0.89936 0.89624 0.96090 0.88912 0.91465 0.92042 0.85482 0.95329 0.86228 0.95826 0.97229 0.93138 0.93157 0.92114 0.92531 0.95647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 6.57 60.07 0.39 0.41 16 2 N -0.52 -9.05 0.81 -268.66 -0.22 -9.27 16 3 C 0.00 -0.09 7.92 60.07 0.48 0.39 16 4 C 0.10 1.81 1.93 -67.57 -0.13 1.68 16 5 H 0.05 1.01 6.34 -51.93 -0.33 0.68 16 6 C -0.11 -1.80 5.06 -26.29 -0.13 -1.93 16 7 C 0.07 1.00 3.61 -65.49 -0.24 0.77 16 8 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 9 C -0.18 -2.71 5.01 -25.21 -0.13 -2.84 16 10 C -0.13 -2.37 5.16 -25.21 -0.13 -2.50 16 11 C 0.07 1.31 3.08 -65.51 -0.20 1.11 16 12 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 13 C -0.06 -1.14 2.15 -90.21 -0.19 -1.33 16 14 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.01 0.16 3.84 -27.88 -0.11 0.05 16 16 C -0.50 -13.01 5.40 -34.44 -0.19 -13.19 16 17 H 0.05 1.37 6.66 -52.49 -0.35 1.02 16 18 C 0.06 1.59 5.41 -17.82 -0.10 1.49 16 19 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 20 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 N -0.51 -8.57 5.29 -221.12 -1.17 -9.74 16 25 C 0.02 0.24 9.46 60.06 0.57 0.81 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 28 H 0.08 1.07 4.18 -51.93 -0.22 0.85 16 29 H 0.09 1.92 5.27 -51.93 -0.27 1.65 16 30 H 0.02 0.37 7.60 -51.93 -0.39 -0.02 16 31 H 0.09 2.10 4.37 -51.93 -0.23 1.87 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.85 5.88 -51.93 -0.31 0.54 16 34 H 0.13 1.89 2.15 -80.83 -0.17 1.72 16 35 H 0.03 0.42 8.01 -51.93 -0.42 0.00 16 36 H 0.12 2.34 3.62 -51.93 -0.19 2.15 16 37 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.05 1.25 3.30 -51.92 -0.17 1.08 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.36 6.88 -51.93 -0.36 0.00 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -26.72 288.69 -8.18 -34.90 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.76 Total: 3.41 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.10 Total: -15.08 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.65 Total: -43.38 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.72 -8.18 -34.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.022 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds