Wall clock time and date at job start Mon Mar 30 2020 04:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99780 * 2 1 4 4 C 1.46896 * 111.00128 * 123.95369 * 2 1 3 5 5 H 1.08996 * 109.42955 * 280.68734 * 4 2 1 6 6 C 1.53136 * 109.42903 * 40.53613 * 4 2 1 7 7 C 1.53713 * 108.89101 * 66.05894 * 6 4 2 8 8 H 1.08992 * 112.61706 * 188.04025 * 7 6 4 9 9 C 1.54604 * 107.80943 * 312.38290 * 7 6 4 10 10 C 1.54290 * 104.84080 * 88.55621 * 9 7 6 11 11 C 1.54603 * 104.84409 * 359.97438 * 10 9 7 12 12 H 1.09004 * 112.21464 * 147.48059 * 11 10 9 13 13 C 1.53140 * 109.42480 * 160.79687 * 4 2 1 14 14 H 1.09006 * 109.56434 * 174.11537 * 13 4 2 15 15 C 1.52994 * 109.57147 * 53.76050 * 13 4 2 16 16 C 1.50703 * 109.47329 * 58.97098 * 15 13 4 17 17 H 1.07995 * 119.99650 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00177 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46866 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47070 * 119.99672 * 20 18 16 23 23 H 1.48492 * 109.47055 * 239.99913 * 20 18 16 24 24 N 1.48719 * 107.23476 * 64.09230 * 7 6 4 25 25 C 1.46895 * 110.99982 * 168.34572 * 24 7 6 26 26 H 1.09002 * 109.47056 * 300.28303 * 1 2 3 27 27 H 1.08997 * 109.47088 * 60.27954 * 1 2 3 28 28 H 1.08994 * 109.47167 * 180.28500 * 1 2 3 29 29 H 1.09007 * 109.46763 * 223.83327 * 3 2 1 30 30 H 1.09000 * 109.47118 * 343.83054 * 3 2 1 31 31 H 1.09000 * 109.47018 * 103.83527 * 3 2 1 32 32 H 1.08995 * 109.56764 * 185.88610 * 6 4 2 33 33 H 1.09002 * 109.56672 * 306.24378 * 6 4 2 34 34 H 1.08993 * 110.36690 * 329.71106 * 9 7 6 35 35 H 1.09005 * 110.36119 * 207.39263 * 9 7 6 36 36 H 1.08996 * 110.35881 * 241.15423 * 10 9 7 37 37 H 1.09004 * 110.45303 * 118.88916 * 10 9 7 38 38 H 1.08995 * 109.47503 * 178.97273 * 15 13 4 39 39 H 1.09008 * 109.47074 * 298.97260 * 15 13 4 40 40 H 0.97005 * 119.99866 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.47417 * 174.46715 * 25 24 7 42 42 H 1.09006 * 109.47155 * 294.46235 * 25 24 7 43 43 H 1.09003 * 109.47637 * 54.46484 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 1 1.9475 -0.1553 2.0391 6 6 1.1534 -2.0298 1.3341 7 6 1.3475 -2.9511 0.1190 8 1 0.6699 -3.8047 0.1278 9 6 1.1886 -2.0915 -1.1562 10 6 2.6042 -1.5512 -1.4475 11 6 3.4896 -2.1328 -0.3214 12 1 4.5074 -2.3304 -0.6579 13 6 3.4513 -1.1525 0.8612 14 1 3.8764 -1.6292 1.7445 15 6 4.2573 0.1007 0.5143 16 6 4.1853 1.0774 1.6597 17 1 3.6213 0.8289 2.5465 18 6 4.8393 2.2883 1.5754 19 7 5.5265 2.5906 0.4955 20 14 4.7494 3.4992 2.9948 21 1 3.9203 2.9241 4.0843 22 1 6.1183 3.7674 3.5042 23 1 4.1387 4.7685 2.5247 24 7 2.7755 -3.3662 0.1044 25 6 2.9961 -4.4594 -0.8516 26 1 -0.3633 0.5182 0.8875 27 1 -0.3633 0.5095 -0.8925 28 1 -0.3633 -1.0276 0.0051 29 1 2.8177 1.4450 -0.7118 30 1 1.2042 2.0644 -0.2862 31 1 2.3550 1.6226 0.9979 32 1 1.4751 -2.5458 2.2386 33 1 0.1015 -1.7577 1.4214 34 1 0.4981 -1.2680 -0.9750 35 1 0.8388 -2.7055 -1.9863 36 1 2.6095 -0.4619 -1.4095 37 1 2.9514 -1.8978 -2.4209 38 1 5.2969 -0.1738 0.3357 39 1 3.8440 0.5617 -0.3829 40 1 5.9869 3.4424 0.4363 41 1 4.0622 -4.6773 -0.9147 42 1 2.4628 -5.3489 -0.5158 43 1 2.6271 -4.1635 -1.8336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:53 Heat of formation + Delta-G solvation = 79.617521 kcal Electronic energy + Delta-G solvation = -21374.788195 eV Core-core repulsion = 18650.626366 eV Total energy + Delta-G solvation = -2724.161829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.56631 -37.80424 -35.73593 -33.57754 -32.62210 -31.55911 -29.22180 -28.04881 -26.74167 -25.54231 -24.67861 -22.84882 -21.82994 -20.62410 -19.28729 -18.51807 -17.69934 -16.99540 -16.35350 -15.64769 -15.43599 -15.14624 -14.78392 -14.37410 -14.17330 -14.01396 -13.81661 -13.55862 -13.14953 -12.99638 -12.86886 -12.73129 -12.62829 -12.52456 -12.44675 -12.29779 -11.96607 -11.53799 -11.43017 -11.21814 -10.80970 -10.72005 -10.60705 -10.41673 -10.32760 -9.24342 -8.63031 -8.09525 -6.09010 1.37485 1.41161 1.50218 2.43934 3.18828 3.23705 3.29326 3.95140 3.97487 4.22057 4.32429 4.40097 4.45089 4.49144 4.54830 4.63733 4.69478 4.71267 4.74093 4.80912 4.92469 4.98681 5.01993 5.04707 5.14349 5.19671 5.29157 5.33685 5.39067 5.41420 5.46473 5.57063 5.71978 5.78777 5.89380 5.95089 6.08858 6.21670 6.32740 6.37990 6.45833 6.51604 6.98522 7.49315 9.01551 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029722 B = 0.008109 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.847202 B = 3452.090123 C = 3767.615494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.519 5.519 3 C 0.011 3.989 4 C 0.104 3.896 5 H 0.024 0.976 6 C -0.109 4.109 7 C 0.068 3.932 8 H 0.103 0.897 9 C -0.168 4.168 10 C -0.132 4.132 11 C 0.073 3.927 12 H 0.057 0.943 13 C -0.051 4.051 14 H 0.038 0.962 15 C 0.016 3.984 16 C -0.500 4.500 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.280 1.280 24 N -0.525 5.525 25 C 0.018 3.982 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.023 0.977 38 H -0.033 1.033 39 H 0.046 0.954 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -9.248 -2.282 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.244 5.244 3 C -0.136 4.136 4 C -0.004 4.004 5 H 0.042 0.958 6 C -0.147 4.147 7 C -0.040 4.040 8 H 0.121 0.879 9 C -0.206 4.206 10 C -0.171 4.171 11 C -0.036 4.036 12 H 0.075 0.925 13 C -0.071 4.071 14 H 0.056 0.944 15 C -0.021 4.021 16 C -0.538 4.538 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.766 3.234 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.205 1.205 24 N -0.247 5.247 25 C -0.131 4.131 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.041 0.959 38 H -0.015 1.015 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.678 -9.570 -2.236 15.264 hybrid contribution 0.495 1.559 0.553 1.727 sum -11.183 -8.011 -1.683 13.859 Atomic orbital electron populations 1.22887 0.88046 1.02994 1.00889 1.63142 1.07128 1.12871 1.41231 1.23002 0.98113 0.88429 1.04024 1.21528 0.94161 0.93841 0.90881 0.95804 1.21979 0.99939 0.94533 0.98250 1.23016 0.89531 0.96536 0.94940 0.87893 1.23861 0.99372 1.01129 0.96208 1.23041 0.94986 1.04250 0.94864 1.22851 0.96246 0.89488 0.95008 0.92457 1.21081 0.95067 0.95013 0.95902 0.94389 1.19595 0.92547 0.92253 0.97674 1.21326 1.29375 1.01035 1.02110 0.93288 1.25613 0.95547 0.99903 0.97545 1.70082 1.34065 1.23430 1.28923 0.85781 0.77636 0.79556 0.80416 1.19236 1.21252 1.20546 1.65433 1.07629 1.05854 1.45813 1.22413 1.01579 0.94720 0.94347 0.95993 0.90490 0.87637 0.92861 0.94116 0.91818 0.91747 0.89130 0.84637 0.93771 0.88306 0.95862 1.01483 0.93607 0.93225 0.92385 0.90196 0.95414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 6.57 127.69 0.84 0.79 16 2 N -0.52 -17.42 0.81 ******* -0.81 -18.23 16 3 C 0.01 0.46 7.92 127.69 1.01 1.47 16 4 C 0.10 3.77 1.93 45.01 0.09 3.86 16 5 H 0.02 0.99 6.34 -2.39 -0.02 0.97 16 6 C -0.11 -3.09 5.06 30.88 0.16 -2.94 16 7 C 0.07 1.83 3.61 45.35 0.16 1.99 16 8 H 0.10 2.28 8.10 -2.39 -0.02 2.26 16 9 C -0.17 -4.61 5.01 31.58 0.16 -4.46 16 10 C -0.13 -4.59 5.16 31.58 0.16 -4.43 16 11 C 0.07 2.72 3.08 45.32 0.14 2.86 16 12 H 0.06 2.32 8.12 -2.38 -0.02 2.30 16 13 C -0.05 -2.17 2.15 -10.53 -0.02 -2.19 16 14 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 15 C 0.02 0.83 3.84 29.85 0.11 0.94 16 16 C -0.50 -26.87 5.40 25.60 0.14 -26.73 16 17 H 0.05 2.63 6.66 -2.91 -0.02 2.61 16 18 C 0.01 0.65 5.41 84.65 0.46 1.11 16 19 N -0.92 -54.18 13.29 21.45 0.28 -53.90 16 20 Si 0.94 43.56 29.54 68.60 2.03 45.58 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 N -0.52 -16.54 5.29 -853.50 -4.51 -21.06 16 25 C 0.02 0.47 9.46 127.69 1.21 1.68 16 26 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 28 H 0.11 2.20 4.18 -2.39 -0.01 2.19 16 29 H 0.05 2.49 5.27 -2.38 -0.01 2.47 16 30 H 0.04 1.43 7.60 -2.39 -0.02 1.41 16 31 H 0.06 2.94 4.37 -2.39 -0.01 2.93 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.07 5.88 -2.39 -0.01 2.06 16 34 H 0.14 3.49 2.15 -29.54 -0.06 3.43 16 35 H 0.04 1.11 8.01 -2.38 -0.02 1.09 16 36 H 0.10 3.89 3.62 -2.39 -0.01 3.88 16 37 H 0.02 0.78 8.10 -2.38 -0.02 0.76 16 38 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16 39 H 0.05 2.41 3.30 -2.38 -0.01 2.40 16 40 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.03 0.71 6.88 -2.39 -0.02 0.69 16 Total: -1.00 -59.78 288.69 2.54 -57.24 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.94 Total: 16.40 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.61 Total: -26.03 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -5.04 Total: -93.18 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -59.78 2.54 -57.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.858 kcal (2) G-P(sol) polarization free energy of solvation -59.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds