Wall clock time and date at job start Mon Mar 30 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99913 * 2 1 4 4 C 1.46890 * 111.00556 * 123.95575 * 2 1 3 5 5 H 1.09001 * 109.38520 * 298.03089 * 4 2 1 6 6 C 1.53141 * 109.42579 * 57.89585 * 4 2 1 7 7 C 1.53710 * 108.89185 * 66.06601 * 6 4 2 8 8 H 1.08995 * 112.12703 * 188.36511 * 7 6 4 9 9 C 1.54612 * 107.80864 * 312.38016 * 7 6 4 10 10 C 1.54282 * 104.84329 * 88.55333 * 9 7 6 11 11 C 1.54606 * 104.84323 * 0.02562 * 10 9 7 12 12 H 1.09006 * 112.21617 * 147.48212 * 11 10 9 13 13 C 1.53132 * 109.43072 * 178.15825 * 4 2 1 14 14 H 1.08999 * 109.67123 * 53.81864 * 13 4 2 15 15 C 1.53004 * 109.56824 * 174.11731 * 13 4 2 16 16 C 1.50706 * 109.46948 * 294.40207 * 15 13 4 17 17 H 1.08000 * 120.00017 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99495 * 179.72440 * 16 15 13 19 19 N 1.31515 * 120.00585 * 0.27995 * 18 16 15 20 20 Si 1.86803 * 119.99615 * 180.27325 * 18 16 15 21 21 H 1.48506 * 109.46922 * 60.00151 * 20 18 16 22 22 H 1.48499 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47243 * 300.00507 * 20 18 16 24 24 N 1.48719 * 104.22453 * 25.17738 * 11 10 9 25 25 C 1.46893 * 111.00188 * 77.51184 * 24 11 10 26 26 H 1.09003 * 109.46834 * 296.04302 * 1 2 3 27 27 H 1.09001 * 109.47424 * 56.04200 * 1 2 3 28 28 H 1.08999 * 109.46941 * 176.04580 * 1 2 3 29 29 H 1.08997 * 109.47252 * 183.95847 * 3 2 1 30 30 H 1.09002 * 109.46863 * 303.95781 * 3 2 1 31 31 H 1.08998 * 109.46830 * 63.95173 * 3 2 1 32 32 H 1.09001 * 109.57097 * 306.24240 * 6 4 2 33 33 H 1.09008 * 109.66668 * 185.94891 * 6 4 2 34 34 H 1.09000 * 110.35927 * 329.71208 * 9 7 6 35 35 H 1.08999 * 110.45429 * 207.44739 * 9 7 6 36 36 H 1.08997 * 110.36706 * 241.16241 * 10 9 7 37 37 H 1.08997 * 110.36379 * 118.84310 * 10 9 7 38 38 H 1.09003 * 109.46811 * 174.40319 * 15 13 4 39 39 H 1.08996 * 109.47387 * 54.40378 * 15 13 4 40 40 H 0.97004 * 119.99891 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.47341 * 59.99731 * 25 24 11 42 42 H 1.08997 * 109.47547 * 180.02562 * 25 24 11 43 43 H 1.09002 * 109.47404 * 300.00215 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1374 5 1 1.6741 -0.2985 2.0682 6 6 1.4616 -2.2000 1.0767 7 6 2.0424 -2.8951 -0.1651 8 1 1.5855 -3.8688 -0.3418 9 6 1.8662 -1.9396 -1.3677 10 6 3.1376 -1.0656 -1.3676 11 6 3.9668 -1.5728 -0.1654 12 1 5.0396 -1.4949 -0.3424 13 6 3.5256 -0.7811 1.0768 14 1 3.9003 0.2404 1.0109 15 6 4.0817 -1.4506 2.3352 16 6 3.7526 -0.6074 3.5401 17 1 3.2015 0.3137 3.4204 18 6 4.1496 -1.0150 4.7959 19 7 4.8203 -2.1368 4.9418 20 14 3.7350 0.0264 6.2903 21 1 2.2606 0.1610 6.4062 22 1 4.2706 -0.6258 7.5122 23 1 4.3446 1.3722 6.1404 24 7 3.5156 -2.9772 0.0233 25 6 4.1258 -3.8649 -0.9754 26 1 -0.3633 0.4512 0.9234 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 0.3738 -2.1820 1.0097 33 1 1.7631 -2.7420 1.9731 34 1 0.9798 -1.3198 -1.2329 35 1 1.7949 -2.5055 -2.2966 36 1 2.8763 -0.0160 -1.2328 37 1 3.6925 -1.2031 -2.2957 38 1 5.1635 -1.5502 2.2459 39 1 3.6342 -2.4379 2.4495 40 1 5.0999 -2.4233 5.8254 41 1 5.2109 -3.8303 -0.8776 42 1 3.7786 -4.8856 -0.8149 43 1 3.8406 -3.5375 -1.9752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:57 Heat of formation + Delta-G solvation = 58.772549 kcal Electronic energy + Delta-G solvation = -21093.174724 eV Core-core repulsion = 18368.108989 eV Total energy + Delta-G solvation = -2725.065735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98441 -36.35947 -33.68488 -31.59486 -31.29129 -30.32125 -27.35767 -26.85439 -25.55366 -23.63631 -23.46434 -21.03836 -20.59990 -19.64750 -17.65816 -16.23217 -15.98056 -15.84456 -14.50253 -14.34518 -14.27555 -13.70613 -13.53749 -13.00980 -12.46550 -12.33605 -12.28332 -12.08420 -11.90637 -11.72714 -11.60773 -11.28907 -11.18727 -10.93588 -10.85750 -10.76964 -10.33587 -10.27234 -10.00612 -9.82904 -9.56727 -9.24994 -8.99762 -8.74997 -8.22927 -7.71256 -7.56575 -5.87750 -3.88926 3.36294 3.41628 3.43112 4.35270 4.52627 4.60538 5.26120 5.34672 5.43164 5.47863 5.51884 5.56001 5.67007 5.75569 5.78657 5.91187 5.92976 5.96883 6.00677 6.03247 6.07513 6.12090 6.18753 6.25002 6.28124 6.49195 6.56007 6.67164 6.77894 6.82735 6.86787 6.92388 7.11194 7.18313 7.45284 7.58287 7.60156 7.78126 7.87687 8.08277 8.28741 8.56789 9.19474 9.73013 11.22734 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.008530 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.339262 B = 3281.630540 C = 3936.908514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.528 5.528 3 C 0.012 3.988 4 C 0.095 3.905 5 H 0.055 0.945 6 C -0.100 4.100 7 C 0.066 3.934 8 H 0.075 0.925 9 C -0.140 4.140 10 C -0.143 4.143 11 C 0.070 3.930 12 H 0.076 0.924 13 C -0.062 4.062 14 H 0.058 0.942 15 C 0.038 3.962 16 C -0.516 4.516 17 H 0.048 0.952 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.882 3.118 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.279 1.279 24 N -0.495 5.495 25 C 0.017 3.983 26 H 0.022 0.978 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.028 0.972 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.011 0.989 39 H 0.038 0.962 40 H 0.258 0.742 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 1.710 -12.567 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.253 5.253 3 C -0.135 4.135 4 C -0.012 4.012 5 H 0.073 0.927 6 C -0.138 4.138 7 C -0.043 4.043 8 H 0.093 0.907 9 C -0.179 4.179 10 C -0.181 4.181 11 C -0.039 4.039 12 H 0.094 0.906 13 C -0.081 4.081 14 H 0.076 0.924 15 C 0.001 3.999 16 C -0.555 4.555 17 H 0.066 0.934 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.205 1.205 24 N -0.217 5.217 25 C -0.132 4.132 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.046 0.954 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.029 0.971 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.406 1.129 -12.306 13.920 hybrid contribution -0.595 1.191 0.818 1.562 sum -7.000 2.320 -11.488 13.652 Atomic orbital electron populations 1.22515 0.89445 1.01885 0.99890 1.63346 1.06142 1.12260 1.43536 1.22496 1.01615 0.89635 0.99802 1.21709 0.96068 0.93066 0.90359 0.92731 1.21781 0.97851 0.95403 0.98787 1.22935 0.89276 0.97066 0.94995 0.90670 1.23169 1.01576 0.97291 0.95835 1.23211 0.95063 1.03689 0.96178 1.23084 0.97681 0.88016 0.95125 0.90575 1.21462 0.92417 0.98097 0.96114 0.92395 1.19026 0.95738 0.96530 0.88655 1.21273 1.35145 1.06941 0.92123 0.93409 1.24962 0.95532 0.95015 0.98683 1.69969 1.38596 1.21715 1.22793 0.86827 0.78531 0.80656 0.82922 1.20532 1.21397 1.20501 1.65433 1.04017 1.07436 1.44800 1.22389 0.99830 0.97278 0.93672 0.95900 0.92184 0.90949 0.90503 0.92311 0.95665 0.92807 0.89687 0.87828 0.95352 0.87743 0.95411 0.97058 0.94347 0.93198 0.92063 0.92311 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 7.80 60.06 0.47 0.60 16 2 N -0.53 -7.80 0.82 -243.01 -0.20 -8.00 16 3 C 0.01 0.17 7.80 60.07 0.47 0.64 16 4 C 0.09 1.74 1.63 -67.58 -0.11 1.63 16 5 H 0.05 1.15 6.86 -51.93 -0.36 0.80 16 6 C -0.10 -1.77 4.82 -26.29 -0.13 -1.89 16 7 C 0.07 1.08 3.67 -65.47 -0.24 0.84 16 8 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 9 C -0.14 -2.08 5.23 -25.21 -0.13 -2.21 16 10 C -0.14 -2.22 5.27 -25.22 -0.13 -2.36 16 11 C 0.07 1.26 3.19 -65.46 -0.21 1.05 16 12 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 13 C -0.06 -1.25 1.70 -90.15 -0.15 -1.41 16 14 H 0.06 1.19 6.05 -51.93 -0.31 0.88 16 15 C 0.04 0.97 4.04 -27.88 -0.11 0.86 16 16 C -0.52 -14.34 8.34 -34.44 -0.29 -14.62 16 17 H 0.05 1.30 7.13 -52.49 -0.37 0.92 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 N -0.49 -9.00 4.34 -221.05 -0.96 -9.96 16 25 C 0.02 0.27 9.46 60.06 0.57 0.84 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.07 0.89 5.36 -51.93 -0.28 0.61 16 29 H 0.08 1.13 5.36 -51.93 -0.28 0.85 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.83 6.04 -51.93 -0.31 0.51 16 33 H 0.08 1.77 6.81 -51.92 -0.35 1.41 16 34 H 0.10 1.47 3.48 -51.93 -0.18 1.29 16 35 H 0.03 0.40 8.01 -51.93 -0.42 -0.01 16 36 H 0.10 1.60 3.48 -51.93 -0.18 1.42 16 37 H 0.03 0.42 8.10 -51.93 -0.42 -0.01 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.04 1.06 5.97 -51.93 -0.31 0.75 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.02 0.30 6.88 -51.93 -0.36 -0.06 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -29.39 298.70 -8.10 -37.49 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.07 Total: -0.15 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.10 Total: -14.43 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.42 Total: -44.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.39 -8.10 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.265 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds