Wall clock time and date at job start Mon Mar 30 2020 04:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99913 * 2 1 4 4 C 1.46890 * 111.00556 * 123.95575 * 2 1 3 5 5 H 1.09001 * 109.38520 * 298.03089 * 4 2 1 6 6 C 1.53141 * 109.42579 * 57.89585 * 4 2 1 7 7 C 1.53710 * 108.89185 * 66.06601 * 6 4 2 8 8 H 1.08995 * 112.12703 * 188.36511 * 7 6 4 9 9 C 1.54612 * 107.80864 * 312.38016 * 7 6 4 10 10 C 1.54282 * 104.84329 * 88.55333 * 9 7 6 11 11 C 1.54606 * 104.84323 * 0.02562 * 10 9 7 12 12 H 1.09006 * 112.21617 * 147.48212 * 11 10 9 13 13 C 1.53132 * 109.43072 * 178.15825 * 4 2 1 14 14 H 1.08999 * 109.67123 * 53.81864 * 13 4 2 15 15 C 1.53004 * 109.56824 * 174.11731 * 13 4 2 16 16 C 1.50706 * 109.46948 * 294.40207 * 15 13 4 17 17 H 1.08000 * 120.00017 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99495 * 179.72440 * 16 15 13 19 19 N 1.31515 * 120.00585 * 0.27995 * 18 16 15 20 20 Si 1.86803 * 119.99615 * 180.27325 * 18 16 15 21 21 H 1.48506 * 109.46922 * 60.00151 * 20 18 16 22 22 H 1.48499 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47243 * 300.00507 * 20 18 16 24 24 N 1.48719 * 104.22453 * 25.17738 * 11 10 9 25 25 C 1.46893 * 111.00188 * 77.51184 * 24 11 10 26 26 H 1.09003 * 109.46834 * 296.04302 * 1 2 3 27 27 H 1.09001 * 109.47424 * 56.04200 * 1 2 3 28 28 H 1.08999 * 109.46941 * 176.04580 * 1 2 3 29 29 H 1.08997 * 109.47252 * 183.95847 * 3 2 1 30 30 H 1.09002 * 109.46863 * 303.95781 * 3 2 1 31 31 H 1.08998 * 109.46830 * 63.95173 * 3 2 1 32 32 H 1.09001 * 109.57097 * 306.24240 * 6 4 2 33 33 H 1.09008 * 109.66668 * 185.94891 * 6 4 2 34 34 H 1.09000 * 110.35927 * 329.71208 * 9 7 6 35 35 H 1.08999 * 110.45429 * 207.44739 * 9 7 6 36 36 H 1.08997 * 110.36706 * 241.16241 * 10 9 7 37 37 H 1.08997 * 110.36379 * 118.84310 * 10 9 7 38 38 H 1.09003 * 109.46811 * 174.40319 * 15 13 4 39 39 H 1.08996 * 109.47387 * 54.40378 * 15 13 4 40 40 H 0.97004 * 119.99891 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.47341 * 59.99731 * 25 24 11 42 42 H 1.08997 * 109.47547 * 180.02562 * 25 24 11 43 43 H 1.09002 * 109.47404 * 300.00215 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1374 5 1 1.6741 -0.2985 2.0682 6 6 1.4616 -2.2000 1.0767 7 6 2.0424 -2.8951 -0.1651 8 1 1.5855 -3.8688 -0.3418 9 6 1.8662 -1.9396 -1.3677 10 6 3.1376 -1.0656 -1.3676 11 6 3.9668 -1.5728 -0.1654 12 1 5.0396 -1.4949 -0.3424 13 6 3.5256 -0.7811 1.0768 14 1 3.9003 0.2404 1.0109 15 6 4.0817 -1.4506 2.3352 16 6 3.7526 -0.6074 3.5401 17 1 3.2015 0.3137 3.4204 18 6 4.1496 -1.0150 4.7959 19 7 4.8203 -2.1368 4.9418 20 14 3.7350 0.0264 6.2903 21 1 2.2606 0.1610 6.4062 22 1 4.2706 -0.6258 7.5122 23 1 4.3446 1.3722 6.1404 24 7 3.5156 -2.9772 0.0233 25 6 4.1258 -3.8649 -0.9754 26 1 -0.3633 0.4512 0.9234 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9233 32 1 0.3738 -2.1820 1.0097 33 1 1.7631 -2.7420 1.9731 34 1 0.9798 -1.3198 -1.2329 35 1 1.7949 -2.5055 -2.2966 36 1 2.8763 -0.0160 -1.2328 37 1 3.6925 -1.2031 -2.2957 38 1 5.1635 -1.5502 2.2459 39 1 3.6342 -2.4379 2.4495 40 1 5.0999 -2.4233 5.8254 41 1 5.2109 -3.8303 -0.8776 42 1 3.7786 -4.8856 -0.8149 43 1 3.8406 -3.5375 -1.9752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:56 Heat of formation + Delta-G solvation = 41.591379 kcal Electronic energy + Delta-G solvation = -21093.919755 eV Core-core repulsion = 18368.108989 eV Total energy + Delta-G solvation = -2725.810767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.36378 -37.61649 -35.64537 -33.46961 -32.65363 -31.62513 -28.99550 -28.21573 -26.84889 -25.46894 -24.75156 -22.73884 -21.99488 -20.93442 -19.12141 -18.23685 -17.45312 -17.26353 -16.41642 -15.67314 -15.58640 -15.12872 -14.89283 -14.31461 -14.18020 -13.90226 -13.73511 -13.48589 -13.24088 -13.19949 -12.95268 -12.87383 -12.63448 -12.47741 -12.40365 -12.36228 -12.01944 -11.95547 -11.49882 -11.35686 -10.95408 -10.80756 -10.78516 -10.56974 -10.41259 -9.05619 -8.84744 -8.10960 -6.19826 1.37160 1.39375 1.47023 2.42633 3.09810 3.21295 3.28352 3.90032 3.98118 4.23073 4.31680 4.39081 4.42116 4.49104 4.54367 4.60994 4.65396 4.69122 4.72300 4.79873 4.83020 4.94777 4.96754 5.04557 5.05795 5.11224 5.20782 5.25149 5.33569 5.38238 5.45899 5.46705 5.61550 5.71097 5.87587 5.89602 6.10640 6.19445 6.22872 6.32076 6.37097 6.48494 6.99068 7.46732 8.99901 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.008530 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.339262 B = 3281.630540 C = 3936.908514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.520 5.520 3 C 0.012 3.988 4 C 0.108 3.892 5 H 0.018 0.982 6 C -0.098 4.098 7 C 0.067 3.933 8 H 0.089 0.911 9 C -0.129 4.129 10 C -0.133 4.133 11 C 0.069 3.931 12 H 0.064 0.936 13 C -0.056 4.056 14 H 0.052 0.948 15 C 0.052 3.948 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.270 1.270 24 N -0.530 5.530 25 C 0.021 3.979 26 H 0.015 0.985 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.013 0.987 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.039 0.961 38 H -0.030 1.030 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 2.777 -14.371 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.244 5.244 3 C -0.136 4.136 4 C 0.000 4.000 5 H 0.036 0.964 6 C -0.136 4.136 7 C -0.041 4.041 8 H 0.108 0.892 9 C -0.168 4.168 10 C -0.172 4.172 11 C -0.040 4.040 12 H 0.082 0.918 13 C -0.075 4.075 14 H 0.070 0.930 15 C 0.015 3.985 16 C -0.565 4.565 17 H 0.069 0.931 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.777 3.223 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.195 1.195 24 N -0.252 5.252 25 C -0.127 4.127 26 H 0.034 0.966 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.032 0.968 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.057 0.943 38 H -0.011 1.011 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.318 2.209 -14.130 16.545 hybrid contribution 0.020 0.841 1.389 1.624 sum -8.297 3.050 -12.741 15.507 Atomic orbital electron populations 1.22629 0.87475 1.02916 1.00858 1.63302 1.07780 1.12502 1.40810 1.22557 1.01177 0.89217 1.00659 1.21360 0.94413 0.93925 0.90311 0.96355 1.21723 0.99464 0.94558 0.97873 1.22978 0.88131 0.98136 0.94893 0.89248 1.23101 1.01360 0.96849 0.95453 1.23138 0.95023 1.04039 0.94978 1.22974 0.97545 0.88306 0.95153 0.91770 1.21263 0.94134 0.97449 0.94698 0.92990 1.18776 0.93013 0.95580 0.91155 1.21638 1.34615 1.07091 0.93140 0.93135 1.25853 0.95412 0.96262 1.02061 1.70122 1.39917 1.23597 1.23520 0.85712 0.78689 0.79053 0.78835 1.19511 1.21023 1.19474 1.65355 1.05459 1.07664 1.46753 1.22369 0.99381 0.97217 0.93748 0.96602 0.89207 0.90210 0.91585 0.88965 0.96848 0.90233 0.94003 0.86694 0.93720 0.87188 0.94258 1.01125 0.97047 0.93198 0.92656 0.91380 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 7.80 127.69 1.00 1.18 16 2 N -0.52 -14.18 0.82 -922.74 -0.75 -14.93 16 3 C 0.01 0.30 7.80 127.69 1.00 1.29 16 4 C 0.11 3.95 1.63 45.01 0.07 4.03 16 5 H 0.02 0.80 6.86 -2.39 -0.02 0.79 16 6 C -0.10 -3.45 4.82 30.88 0.15 -3.30 16 7 C 0.07 2.09 3.67 45.35 0.17 2.26 16 8 H 0.09 2.54 8.11 -2.39 -0.02 2.52 16 9 C -0.13 -3.38 5.23 31.58 0.17 -3.21 16 10 C -0.13 -3.82 5.27 31.58 0.17 -3.65 16 11 C 0.07 2.51 3.19 45.37 0.14 2.65 16 12 H 0.06 2.44 8.12 -2.38 -0.02 2.42 16 13 C -0.06 -2.36 1.70 -10.49 -0.02 -2.38 16 14 H 0.05 2.20 6.05 -2.39 -0.01 2.19 16 15 C 0.05 2.84 4.04 29.85 0.12 2.96 16 16 C -0.53 -30.42 8.34 25.60 0.21 -30.20 16 17 H 0.05 2.83 7.13 -2.91 -0.02 2.81 16 18 C 0.00 0.08 5.46 84.65 0.46 0.55 16 19 N -0.93 -58.51 13.29 21.45 0.28 -58.22 16 20 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 N -0.53 -19.27 4.34 -853.26 -3.70 -22.97 16 25 C 0.02 0.64 9.46 127.69 1.21 1.85 16 26 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.08 1.65 5.36 -2.39 -0.01 1.64 16 29 H 0.07 1.85 5.36 -2.39 -0.01 1.83 16 30 H 0.09 1.78 8.12 -2.39 -0.02 1.77 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 2.33 6.04 -2.39 -0.01 2.31 16 33 H 0.04 1.82 6.81 -2.38 -0.02 1.80 16 34 H 0.12 2.76 3.48 -2.39 -0.01 2.75 16 35 H 0.04 1.06 8.01 -2.39 -0.02 1.04 16 36 H 0.11 3.05 3.48 -2.39 -0.01 3.04 16 37 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 38 H -0.03 -1.82 8.14 -2.39 -0.02 -1.84 16 39 H 0.01 0.67 5.97 -2.39 -0.01 0.65 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.04 0.98 6.88 -2.39 -0.02 0.96 16 Total: -1.00 -66.24 298.70 3.68 -62.55 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.98 Total: 11.95 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.84 Total: -25.96 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -4.17 Total: -96.12 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -66.24 3.68 -62.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.144 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds