Wall clock time and date at job start Mon Mar 30 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48059 * 111.16292 * 2 1 4 4 C 1.53994 * 107.14403 * 145.62956 * 3 2 1 5 5 H 1.09000 * 110.31175 * 239.99446 * 4 3 2 6 6 C 1.50710 * 110.30674 * 117.83239 * 4 3 2 7 7 H 1.07994 * 120.00199 * 339.26808 * 6 4 3 8 8 C 1.37872 * 119.99784 * 159.26397 * 6 4 3 9 9 N 1.31514 * 120.00054 * 175.03352 * 8 6 4 10 10 Si 1.86808 * 120.00140 * 355.03498 * 8 6 4 11 11 H 1.48500 * 109.46875 * 95.23676 * 10 8 6 12 12 H 1.48501 * 109.46986 * 215.23572 * 10 8 6 13 13 H 1.48494 * 109.46943 * 335.23668 * 10 8 6 14 14 C 1.54592 * 105.14025 * 358.91836 * 4 3 2 15 15 H 1.09002 * 110.72479 * 219.68215 * 14 4 3 16 16 N 1.46902 * 110.72432 * 96.39682 * 14 4 3 17 17 C 1.48537 * 110.99987 * 117.39540 * 2 1 3 18 18 H 1.09006 * 110.66656 * 318.87721 * 17 2 1 19 19 C 1.52992 * 110.67100 * 81.84445 * 17 2 1 20 20 C 1.52995 * 109.47549 * 180.83073 * 19 17 2 21 21 C 1.53001 * 109.47432 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.46972 * 300.00160 * 21 20 19 23 23 C 1.52997 * 109.47538 * 59.99644 * 22 21 20 24 24 C 1.53000 * 109.47049 * 300.83351 * 19 17 2 25 25 H 1.09002 * 109.47123 * 311.51504 * 1 2 3 26 26 H 1.09001 * 109.46790 * 71.51407 * 1 2 3 27 27 H 1.09002 * 109.47205 * 191.51307 * 1 2 3 28 28 H 1.09003 * 109.75953 * 26.31646 * 3 2 1 29 29 H 1.09006 * 109.99470 * 265.07819 * 3 2 1 30 30 H 0.96997 * 120.00185 * 180.02562 * 9 8 6 31 31 H 1.00901 * 110.99976 * 66.50033 * 16 14 4 32 32 H 1.00898 * 111.00164 * 190.44955 * 16 14 4 33 33 H 1.09003 * 109.46915 * 60.82891 * 19 17 2 34 34 H 1.09004 * 109.47050 * 300.00054 * 20 19 17 35 35 H 1.09003 * 109.47161 * 59.99968 * 20 19 17 36 36 H 1.09000 * 109.47231 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.47108 * 59.99771 * 21 20 19 38 38 H 1.09003 * 109.46886 * 299.99747 * 22 21 20 39 39 H 1.09004 * 109.47420 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47488 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46948 * 60.00141 * 23 22 21 42 42 H 1.09003 * 109.46886 * 299.99557 * 24 19 17 43 43 H 1.09002 * 109.47584 * 59.99747 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0035 1.3807 0.0000 4 6 3.3001 1.3656 0.8307 5 1 3.2130 2.0427 1.6804 6 6 4.4764 1.7517 -0.0286 7 1 4.4121 1.6640 -1.1031 8 6 5.6346 2.2169 0.5570 9 7 6.6937 2.4612 -0.1835 10 14 5.6997 2.5003 2.4023 11 1 6.2712 1.3018 3.0672 12 1 6.5525 3.6810 2.6920 13 1 4.3272 2.7433 2.9144 14 6 3.4490 -0.0933 1.3201 15 1 3.8089 -0.1203 2.3486 16 7 4.3443 -0.8498 0.4345 17 6 2.0013 -0.6381 1.2312 18 1 1.4219 -0.3345 2.1032 19 6 2.0053 -2.1616 1.0915 20 6 2.5383 -2.7906 2.3803 21 6 2.5428 -4.3142 2.2403 22 6 1.1172 -4.8070 1.9839 23 6 0.5841 -4.1780 0.6951 24 6 0.5794 -2.6539 0.8354 25 1 -0.3633 0.6812 0.7695 26 1 -0.3633 0.3259 -0.9747 27 1 -0.3634 -1.0070 0.2051 28 1 1.2790 2.0564 0.4548 29 1 2.2200 1.6966 -1.0206 30 1 7.5087 2.7881 0.2285 31 1 5.2886 -0.4984 0.4891 32 1 4.3128 -1.8360 0.6454 33 1 2.6441 -2.4481 0.2561 34 1 3.5541 -2.4399 2.5627 35 1 1.8994 -2.5041 3.2157 36 1 2.9221 -4.7623 3.1586 37 1 3.1819 -4.6004 1.4049 38 1 0.4781 -4.5208 2.8192 39 1 1.1203 -5.8925 1.8846 40 1 -0.4316 -4.5287 0.5127 41 1 1.2232 -4.4642 -0.1403 42 1 -0.0594 -2.3674 1.6708 43 1 0.1997 -2.2058 -0.0828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:40 Heat of formation + Delta-G solvation = 4.618688 kcal Electronic energy + Delta-G solvation = -20404.105458 eV Core-core repulsion = 17676.691435 eV Total energy + Delta-G solvation = -2727.414023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64586 -37.22023 -33.77166 -32.45811 -31.27337 -30.50622 -29.10455 -26.91436 -25.21405 -23.40759 -22.44528 -21.99763 -19.65215 -19.17606 -18.72909 -16.94592 -15.90371 -15.36386 -14.65614 -14.43358 -14.08340 -13.94485 -13.74568 -13.65730 -13.29151 -12.61333 -12.43119 -12.33808 -12.11553 -11.94840 -11.48028 -11.30207 -11.16548 -11.00395 -10.96959 -10.89135 -10.67023 -10.35123 -10.08430 -9.91359 -9.60551 -9.40400 -9.33629 -8.99681 -8.51251 -7.67429 -7.37505 -5.99949 -3.93114 3.23811 3.34469 3.35792 4.42621 4.56044 4.81860 4.89271 4.94933 5.20917 5.31792 5.41528 5.49612 5.55338 5.60511 5.61959 5.64951 5.70942 5.75854 5.79785 5.90726 6.01196 6.06376 6.08537 6.13583 6.21325 6.23235 6.23832 6.33177 6.35167 6.40219 6.61059 6.62685 6.87361 6.89925 7.03587 7.17950 7.66189 7.79487 7.82485 8.35575 8.64686 8.71171 9.12425 9.61178 11.13160 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.007228 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.573049 B = 3873.007741 C = 4411.240473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.498 5.498 3 C 0.058 3.942 4 C -0.001 4.001 5 H 0.037 0.963 6 C -0.463 4.463 7 H 0.080 0.920 8 C 0.064 3.936 9 N -0.901 5.901 10 Si 0.860 3.140 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.265 1.265 14 C 0.095 3.905 15 H 0.012 0.988 16 N -0.806 5.806 17 C 0.075 3.925 18 H 0.036 0.964 19 C -0.071 4.071 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.125 4.125 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.018 0.982 29 H 0.079 0.921 30 H 0.260 0.740 31 H 0.350 0.650 32 H 0.310 0.690 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 -11.711 5.341 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.221 5.221 3 C -0.069 4.069 4 C -0.021 4.021 5 H 0.055 0.945 6 C -0.502 4.502 7 H 0.098 0.902 8 C -0.136 4.136 9 N -0.541 5.541 10 Si 0.689 3.311 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.190 1.190 14 C -0.018 4.018 15 H 0.030 0.970 16 N -0.339 5.339 17 C -0.034 4.034 18 H 0.054 0.946 19 C -0.090 4.090 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.162 4.162 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.335 -11.623 4.278 16.789 hybrid contribution 0.349 0.496 2.782 2.847 sum -10.985 -11.127 7.059 17.156 Atomic orbital electron populations 1.23178 0.90341 1.02217 1.00398 1.64602 1.05401 1.16363 1.35777 1.22944 0.95500 0.86919 1.01549 1.20258 0.94668 0.91481 0.95654 0.94503 1.20837 0.94990 1.39547 0.94846 0.90231 1.25014 0.95859 0.96020 0.96697 1.69906 1.02317 1.46779 1.35058 0.87076 0.78047 0.78116 0.87858 1.20818 1.21496 1.19012 1.22260 0.90520 0.97212 0.91780 0.97009 1.58560 1.13639 1.03870 1.57849 1.22783 0.95925 0.93794 0.90873 0.94605 1.21037 0.96511 0.93515 0.97971 1.21610 1.01008 0.94858 0.97954 1.21510 0.96781 0.95909 1.01259 1.21524 0.96684 0.99284 0.98023 1.21561 1.00321 0.96084 0.97658 1.22026 0.97408 0.94800 1.01941 0.96705 0.92179 0.89581 0.96396 0.90311 0.92968 0.83368 0.87705 0.88859 0.92173 0.92678 0.92597 0.91818 0.92519 0.92642 0.92700 0.91888 0.93056 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.20 9.00 60.06 0.54 0.35 16 2 N -0.50 -9.22 5.16 -230.70 -1.19 -10.41 16 3 C 0.06 1.22 6.37 -2.67 -0.02 1.21 16 4 C 0.00 -0.02 2.40 -90.41 -0.22 -0.24 16 5 H 0.04 0.89 5.48 -51.93 -0.28 0.61 16 6 C -0.46 -12.54 7.17 -34.44 -0.25 -12.79 16 7 H 0.08 2.42 7.78 -52.49 -0.41 2.02 16 8 C 0.06 1.78 5.19 -17.82 -0.09 1.69 16 9 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 10 Si 0.86 21.02 27.20 -169.99 -4.62 16.39 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.26 -6.28 5.91 56.52 0.33 -5.94 16 14 C 0.10 1.96 2.70 -65.85 -0.18 1.79 16 15 H 0.01 0.26 7.82 -51.93 -0.41 -0.15 16 16 N -0.81 -16.63 8.15 -3.09 -0.03 -16.65 16 17 C 0.08 1.32 1.96 -65.79 -0.13 1.19 16 18 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 19 C -0.07 -1.04 1.45 -90.63 -0.13 -1.17 16 20 C -0.12 -1.53 4.83 -26.73 -0.13 -1.66 16 21 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 22 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 23 C -0.12 -1.29 5.93 -26.71 -0.16 -1.45 16 24 C -0.12 -1.57 3.71 -26.70 -0.10 -1.67 16 25 H 0.01 0.22 7.77 -51.93 -0.40 -0.19 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.14 3.69 -51.93 -0.19 0.95 16 28 H 0.02 0.35 7.54 -51.93 -0.39 -0.04 16 29 H 0.08 1.78 7.50 -51.93 -0.39 1.39 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.35 7.98 7.82 -39.29 -0.31 7.68 16 32 H 0.31 5.50 6.08 -39.29 -0.24 5.26 16 33 H 0.09 1.53 6.46 -51.93 -0.34 1.19 16 34 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.63 8.00 -51.93 -0.42 0.21 16 43 H 0.09 1.13 5.22 -51.93 -0.27 0.86 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -28.41 306.55 -9.02 -37.43 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.40 Total: 10.28 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.17 Total: -15.58 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.44 Total: -53.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.62 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.41 -9.02 -37.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.045 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds