Wall clock time and date at job start Mon Mar 30 2020 04:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48059 * 111.16292 * 2 1 4 4 C 1.53994 * 107.14403 * 145.62956 * 3 2 1 5 5 H 1.09000 * 110.31175 * 239.99446 * 4 3 2 6 6 C 1.50710 * 110.30674 * 117.83239 * 4 3 2 7 7 H 1.07994 * 120.00199 * 339.26808 * 6 4 3 8 8 C 1.37872 * 119.99784 * 159.26397 * 6 4 3 9 9 N 1.31514 * 120.00054 * 175.03352 * 8 6 4 10 10 Si 1.86808 * 120.00140 * 355.03498 * 8 6 4 11 11 H 1.48500 * 109.46875 * 95.23676 * 10 8 6 12 12 H 1.48501 * 109.46986 * 215.23572 * 10 8 6 13 13 H 1.48494 * 109.46943 * 335.23668 * 10 8 6 14 14 C 1.54592 * 105.14025 * 358.91836 * 4 3 2 15 15 H 1.09002 * 110.72479 * 219.68215 * 14 4 3 16 16 N 1.46902 * 110.72432 * 96.39682 * 14 4 3 17 17 C 1.48537 * 110.99987 * 117.39540 * 2 1 3 18 18 H 1.09006 * 110.66656 * 318.87721 * 17 2 1 19 19 C 1.52992 * 110.67100 * 81.84445 * 17 2 1 20 20 C 1.52995 * 109.47549 * 180.83073 * 19 17 2 21 21 C 1.53001 * 109.47432 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.46972 * 300.00160 * 21 20 19 23 23 C 1.52997 * 109.47538 * 59.99644 * 22 21 20 24 24 C 1.53000 * 109.47049 * 300.83351 * 19 17 2 25 25 H 1.09002 * 109.47123 * 311.51504 * 1 2 3 26 26 H 1.09001 * 109.46790 * 71.51407 * 1 2 3 27 27 H 1.09002 * 109.47205 * 191.51307 * 1 2 3 28 28 H 1.09003 * 109.75953 * 26.31646 * 3 2 1 29 29 H 1.09006 * 109.99470 * 265.07819 * 3 2 1 30 30 H 0.96997 * 120.00185 * 180.02562 * 9 8 6 31 31 H 1.00901 * 110.99976 * 66.50033 * 16 14 4 32 32 H 1.00898 * 111.00164 * 190.44955 * 16 14 4 33 33 H 1.09003 * 109.46915 * 60.82891 * 19 17 2 34 34 H 1.09004 * 109.47050 * 300.00054 * 20 19 17 35 35 H 1.09003 * 109.47161 * 59.99968 * 20 19 17 36 36 H 1.09000 * 109.47231 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.47108 * 59.99771 * 21 20 19 38 38 H 1.09003 * 109.46886 * 299.99747 * 22 21 20 39 39 H 1.09004 * 109.47420 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47488 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.46948 * 60.00141 * 23 22 21 42 42 H 1.09003 * 109.46886 * 299.99557 * 24 19 17 43 43 H 1.09002 * 109.47584 * 59.99747 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0035 1.3807 0.0000 4 6 3.3001 1.3656 0.8307 5 1 3.2130 2.0427 1.6804 6 6 4.4764 1.7517 -0.0286 7 1 4.4121 1.6640 -1.1031 8 6 5.6346 2.2169 0.5570 9 7 6.6937 2.4612 -0.1835 10 14 5.6997 2.5003 2.4023 11 1 6.2712 1.3018 3.0672 12 1 6.5525 3.6810 2.6920 13 1 4.3272 2.7433 2.9144 14 6 3.4490 -0.0933 1.3201 15 1 3.8089 -0.1203 2.3486 16 7 4.3443 -0.8498 0.4345 17 6 2.0013 -0.6381 1.2312 18 1 1.4219 -0.3345 2.1032 19 6 2.0053 -2.1616 1.0915 20 6 2.5383 -2.7906 2.3803 21 6 2.5428 -4.3142 2.2403 22 6 1.1172 -4.8070 1.9839 23 6 0.5841 -4.1780 0.6951 24 6 0.5794 -2.6539 0.8354 25 1 -0.3633 0.6812 0.7695 26 1 -0.3633 0.3259 -0.9747 27 1 -0.3634 -1.0070 0.2051 28 1 1.2790 2.0564 0.4548 29 1 2.2200 1.6966 -1.0206 30 1 7.5087 2.7881 0.2285 31 1 5.2886 -0.4984 0.4891 32 1 4.3128 -1.8360 0.6454 33 1 2.6441 -2.4481 0.2561 34 1 3.5541 -2.4399 2.5627 35 1 1.8994 -2.5041 3.2157 36 1 2.9221 -4.7623 3.1586 37 1 3.1819 -4.6004 1.4049 38 1 0.4781 -4.5208 2.8192 39 1 1.1203 -5.8925 1.8846 40 1 -0.4316 -4.5287 0.5127 41 1 1.2232 -4.4642 -0.1403 42 1 -0.0594 -2.3674 1.6708 43 1 0.1997 -2.2058 -0.0828 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:39 Heat of formation + Delta-G solvation = -14.972553 kcal Electronic energy + Delta-G solvation = -20404.954998 eV Core-core repulsion = 17676.691435 eV Total energy + Delta-G solvation = -2728.263563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99237 -38.43726 -35.45536 -34.22500 -32.76269 -31.51724 -30.65690 -28.38306 -26.84156 -25.12024 -23.42921 -23.14833 -20.86217 -20.59363 -20.27174 -18.99020 -17.24804 -16.81876 -16.27369 -16.05826 -15.29996 -15.15666 -15.01081 -14.87887 -14.72152 -14.47583 -13.85512 -13.64442 -13.39968 -13.11468 -13.06937 -12.94919 -12.48719 -12.42955 -12.27910 -11.96136 -11.89217 -11.71723 -11.58251 -11.39320 -11.18106 -11.09122 -10.72615 -10.59300 -10.46939 -9.17681 -9.01468 -8.17873 -6.14697 1.28527 1.33969 1.41173 2.35793 3.10266 3.20907 3.78751 3.88828 3.96664 3.97918 4.11811 4.16968 4.37146 4.42752 4.45944 4.49956 4.59711 4.64726 4.67350 4.72221 4.75319 4.80906 4.85278 4.92583 5.06994 5.09013 5.13808 5.24019 5.26636 5.32804 5.36356 5.40165 5.46341 5.49740 5.59361 5.72314 5.74778 6.14566 6.33308 6.48456 6.74997 6.83790 7.05247 7.42479 8.99004 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.007228 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.573049 B = 3873.007741 C = 4411.240473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.511 5.511 3 C 0.063 3.937 4 C -0.009 4.009 5 H 0.033 0.967 6 C -0.454 4.454 7 H 0.031 0.969 8 C 0.015 3.985 9 N -0.949 5.949 10 Si 0.923 3.077 11 H -0.272 1.272 12 H -0.291 1.291 13 H -0.250 1.250 14 C 0.097 3.903 15 H 0.012 0.988 16 N -0.813 5.813 17 C 0.082 3.918 18 H 0.044 0.956 19 C -0.064 4.064 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.121 4.121 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.328 0.672 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 -13.492 7.370 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.234 5.234 3 C -0.065 4.065 4 C -0.029 4.029 5 H 0.051 0.949 6 C -0.493 4.493 7 H 0.049 0.951 8 C -0.181 4.181 9 N -0.591 5.591 10 Si 0.749 3.251 11 H -0.198 1.198 12 H -0.218 1.218 13 H -0.174 1.174 14 C -0.016 4.016 15 H 0.030 0.970 16 N -0.346 5.346 17 C -0.027 4.027 18 H 0.062 0.938 19 C -0.083 4.083 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.158 4.158 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.128 0.872 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.485 -13.431 6.311 20.051 hybrid contribution 0.979 1.042 2.048 2.498 sum -12.506 -12.388 8.359 19.487 Atomic orbital electron populations 1.23275 0.87859 1.03953 1.00997 1.64547 1.07791 1.14510 1.36602 1.22724 0.95051 0.89097 0.99633 1.20274 0.94176 0.93236 0.95182 0.94859 1.20826 0.96525 1.38935 0.92997 0.95100 1.25669 0.95290 0.95963 1.01205 1.70057 1.03129 1.48639 1.37238 0.86071 0.78625 0.78062 0.82336 1.19759 1.21753 1.17449 1.22191 0.92615 0.95469 0.91364 0.97023 1.58499 1.12634 1.05128 1.58290 1.22793 0.93493 0.95654 0.90739 0.93785 1.20947 0.97915 0.91335 0.98151 1.21582 1.00161 0.96283 0.97144 1.21498 0.97686 0.94311 1.01748 1.21515 0.95824 1.00120 0.97752 1.21539 1.01291 0.94643 0.97877 1.21959 0.95722 0.96149 1.01923 0.96057 0.91716 0.87246 0.94908 0.93003 0.93012 0.85080 0.85772 0.90824 0.93569 0.92002 0.91415 0.92254 0.91867 0.91190 0.91030 0.92581 0.92016 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.37 9.00 127.69 1.15 0.78 16 2 N -0.51 -18.30 5.16 -883.79 -4.56 -22.86 16 3 C 0.06 2.64 6.37 86.42 0.55 3.19 16 4 C -0.01 -0.42 2.40 -10.66 -0.03 -0.44 16 5 H 0.03 1.58 5.48 -2.39 -0.01 1.56 16 6 C -0.45 -25.43 7.17 25.60 0.18 -25.25 16 7 H 0.03 1.99 7.78 -2.91 -0.02 1.97 16 8 C 0.01 0.83 5.19 84.65 0.44 1.27 16 9 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 10 Si 0.92 43.64 27.20 68.60 1.87 45.50 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.25 -11.14 5.91 99.48 0.59 -10.55 16 14 C 0.10 3.91 2.70 46.12 0.12 4.03 16 15 H 0.01 0.49 7.82 -2.39 -0.02 0.47 16 16 N -0.81 -33.79 8.15 -163.69 -1.33 -35.12 16 17 C 0.08 2.73 1.96 45.26 0.09 2.82 16 18 H 0.04 1.42 8.02 -2.38 -0.02 1.40 16 19 C -0.06 -1.75 1.45 -10.80 -0.02 -1.76 16 20 C -0.11 -2.70 4.83 30.59 0.15 -2.55 16 21 C -0.11 -2.22 5.92 30.59 0.18 -2.04 16 22 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 23 C -0.12 -2.13 5.93 30.61 0.18 -1.95 16 24 C -0.12 -2.65 3.71 30.61 0.11 -2.54 16 25 H 0.02 0.57 7.77 -2.39 -0.02 0.55 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.11 2.54 3.69 -2.39 -0.01 2.53 16 28 H 0.03 1.26 7.54 -2.39 -0.02 1.24 16 29 H 0.05 2.43 7.50 -2.38 -0.02 2.41 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.34 15.65 7.82 -89.69 -0.70 14.95 16 32 H 0.33 11.54 6.08 -89.70 -0.55 10.99 16 33 H 0.07 2.31 6.46 -2.39 -0.02 2.30 16 34 H 0.05 1.22 6.79 -2.38 -0.02 1.20 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.26 8.00 -2.39 -0.02 1.24 16 43 H 0.08 1.85 5.22 -2.39 -0.01 1.83 16 Total: -1.00 -62.72 306.55 -0.80 -63.53 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.37 Total: 33.31 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 3.30 Total: -26.16 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -5.60 Total: -116.18 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.87 Total: 45.50 kcal Total: -62.72 -0.80 -63.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.554 kcal (2) G-P(sol) polarization free energy of solvation -62.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds