Wall clock time and date at job start Mon Mar 30 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48539 * 110.99957 * 2 1 4 4 C 1.54940 * 103.22668 * 200.27599 * 3 2 1 5 5 H 1.09002 * 110.72704 * 279.05654 * 4 3 2 6 6 C 1.50699 * 110.87450 * 155.84537 * 4 3 2 7 7 H 1.08002 * 119.99685 * 328.33989 * 6 4 3 8 8 C 1.37876 * 120.00024 * 148.34399 * 6 4 3 9 9 N 1.31510 * 119.99874 * 184.99442 * 8 6 4 10 10 Si 1.86792 * 120.00028 * 4.99822 * 8 6 4 11 11 H 1.48501 * 109.47265 * 84.74051 * 10 8 6 12 12 H 1.48502 * 109.47065 * 204.74054 * 10 8 6 13 13 H 1.48500 * 109.47178 * 324.74312 * 10 8 6 14 14 C 1.54597 * 102.91987 * 37.41356 * 4 3 2 15 15 H 1.08995 * 110.30763 * 219.12018 * 14 4 3 16 16 N 1.46906 * 110.30682 * 96.95838 * 14 4 3 17 17 C 1.47900 * 111.00458 * 242.60455 * 2 1 3 18 18 H 1.09004 * 109.91510 * 26.48871 * 17 2 1 19 19 C 1.53005 * 109.91597 * 265.19975 * 17 2 1 20 20 C 1.53002 * 109.46777 * 182.40942 * 19 17 2 21 21 C 1.53005 * 109.46777 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.47302 * 59.99550 * 21 20 19 23 23 C 1.52997 * 109.47269 * 300.00032 * 22 21 20 24 24 C 1.52996 * 109.47302 * 62.40492 * 19 17 2 25 25 H 1.09004 * 109.47089 * 177.39560 * 1 2 3 26 26 H 1.09005 * 109.47672 * 297.39587 * 1 2 3 27 27 H 1.08997 * 109.47288 * 57.39885 * 1 2 3 28 28 H 1.09001 * 110.66472 * 81.84839 * 3 2 1 29 29 H 1.08998 * 110.66313 * 318.71506 * 3 2 1 30 30 H 0.97000 * 120.00294 * 179.97438 * 9 8 6 31 31 H 1.00894 * 110.99883 * 66.35217 * 16 14 4 32 32 H 1.00901 * 110.99904 * 190.30989 * 16 14 4 33 33 H 1.08999 * 109.46493 * 302.40290 * 19 17 2 34 34 H 1.08997 * 109.46668 * 299.99321 * 20 19 17 35 35 H 1.08991 * 109.47545 * 59.99979 * 20 19 17 36 36 H 1.08999 * 109.46493 * 299.99348 * 21 20 19 37 37 H 1.08998 * 109.46999 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47337 * 180.02562 * 22 21 20 39 39 H 1.09006 * 109.46884 * 59.99849 * 22 21 20 40 40 H 1.08998 * 109.47495 * 300.00159 * 23 22 21 41 41 H 1.09000 * 109.47379 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47286 * 300.00061 * 24 19 17 43 43 H 1.09006 * 109.46884 * 59.99849 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5227 5 1 4.1115 0.8836 0.2788 6 6 3.9553 2.4877 -1.1424 7 1 3.2676 3.1569 -1.6381 8 6 5.2962 2.8016 -1.0768 9 7 5.7233 3.9599 -1.5299 10 14 6.5063 1.5815 -0.3445 11 1 6.9246 0.6118 -1.3885 12 1 7.6980 2.3091 0.1612 13 1 5.8583 0.8535 0.7760 14 6 3.2982 0.1053 -1.5930 15 1 4.1470 -0.5774 -1.5539 16 7 3.1842 0.7027 -2.9302 17 6 1.9990 -0.6353 -1.2259 18 1 1.2758 -0.5402 -2.0359 19 6 2.2982 -2.1121 -0.9600 20 6 2.9017 -2.7442 -2.2158 21 6 3.2003 -4.2212 -1.9501 22 6 1.9031 -4.9465 -1.5869 23 6 1.2997 -4.3143 -0.3311 24 6 1.0014 -2.8378 -0.5964 25 1 -0.3633 -1.0266 -0.0467 26 1 -0.3634 0.4729 0.9124 27 1 -0.3634 0.5537 -0.8657 28 1 2.0041 1.7977 1.0096 29 1 1.4236 2.0204 -0.6729 30 1 6.6667 4.1810 -1.4834 31 1 4.0424 1.1623 -3.1953 32 1 2.9187 0.0100 -3.6142 33 1 3.0055 -2.1965 -0.1349 34 1 2.1944 -2.6597 -3.0408 35 1 3.8256 -2.2273 -2.4748 36 1 3.9074 -4.3060 -1.1249 37 1 3.6299 -4.6717 -2.8449 38 1 2.1159 -5.9985 -1.3972 39 1 1.1960 -4.8615 -2.4121 40 1 2.0067 -4.3992 0.4941 41 1 0.3753 -4.8307 -0.0726 42 1 0.5715 -2.3874 0.2983 43 1 0.2941 -2.7532 -1.4215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259786676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:43 Heat of formation + Delta-G solvation = -13.792012 kcal Electronic energy + Delta-G solvation = -20284.070556 eV Core-core repulsion = 17555.858185 eV Total energy + Delta-G solvation = -2728.212371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.58056 -37.26863 -33.73370 -32.41338 -31.28735 -30.57237 -29.40155 -26.76814 -25.18181 -23.22808 -22.42062 -21.89720 -19.73074 -19.57176 -18.77792 -16.86496 -15.82393 -15.11843 -14.67831 -14.31255 -14.12320 -14.06059 -13.72159 -13.62283 -13.46612 -12.76422 -12.58831 -12.34199 -12.24064 -11.95124 -11.48063 -11.23798 -11.12975 -11.05229 -11.01499 -10.94011 -10.68827 -10.23017 -10.18488 -9.90693 -9.70745 -9.64878 -9.27500 -9.07374 -8.53466 -7.82026 -7.55371 -6.03195 -3.98338 3.26754 3.36880 3.38752 4.42848 4.53071 4.78503 4.86530 4.93063 5.19206 5.23713 5.39873 5.49692 5.50714 5.57331 5.62338 5.67435 5.74039 5.75899 5.82653 5.91623 6.01129 6.05339 6.08274 6.14364 6.21324 6.22737 6.28822 6.31245 6.39773 6.42980 6.55587 6.66574 6.74215 6.88995 7.05907 7.24594 7.50967 7.74307 7.80546 8.20095 8.48640 8.67703 9.08985 9.59277 11.09720 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.007372 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.869550 B = 3797.087141 C = 4359.203272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.522 5.522 3 C 0.053 3.947 4 C 0.011 3.989 5 H 0.048 0.952 6 C -0.477 4.477 7 H 0.078 0.922 8 C 0.066 3.934 9 N -0.901 5.901 10 Si 0.867 3.133 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.082 3.918 15 H 0.021 0.979 16 N -0.822 5.822 17 C 0.078 3.922 18 H 0.051 0.949 19 C -0.071 4.071 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.113 4.113 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.353 0.647 32 H 0.309 0.691 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -15.561 0.303 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.246 5.246 3 C -0.074 4.074 4 C -0.009 4.009 5 H 0.066 0.934 6 C -0.515 4.515 7 H 0.096 0.904 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.696 3.304 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.188 1.188 14 C -0.030 4.030 15 H 0.039 0.961 16 N -0.353 5.353 17 C -0.031 4.031 18 H 0.069 0.931 19 C -0.090 4.090 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.169 0.831 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.856 -15.255 1.077 17.192 hybrid contribution 1.236 -0.807 -0.691 1.629 sum -6.620 -16.061 0.386 17.377 Atomic orbital electron populations 1.22646 0.89652 1.01205 1.00240 1.64624 1.06531 1.17186 1.36230 1.23221 0.97361 0.87134 0.99650 1.20276 0.92854 0.94592 0.93166 0.93421 1.20795 0.93432 1.03122 1.34183 0.90383 1.25058 0.98223 0.94770 0.95393 1.69904 1.15194 1.21097 1.47807 0.87030 0.81117 0.81894 0.80405 1.20627 1.21663 1.18769 1.22371 0.93140 0.95241 0.92248 0.96098 1.58725 1.42036 1.32594 1.01935 1.22419 0.96756 0.92762 0.91132 0.93105 1.21104 0.96951 0.93504 0.97433 1.21630 1.00839 0.95024 0.97948 1.21513 0.97315 0.95719 1.00970 1.21526 0.97282 0.98618 0.98085 1.21536 1.00169 0.96265 0.97665 1.21691 0.97523 0.94355 1.01502 0.91576 0.92154 0.95956 0.91734 0.93846 0.92844 0.83079 0.88054 0.90911 0.92303 0.91934 0.92152 0.92474 0.92644 0.92320 0.92146 0.92612 0.90796 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.96 60.06 0.54 0.71 16 2 N -0.52 -9.41 4.93 -230.78 -1.14 -10.55 16 3 C 0.05 1.12 5.99 -1.89 -0.01 1.11 16 4 C 0.01 0.26 2.47 -89.91 -0.22 0.03 16 5 H 0.05 1.17 5.24 -51.93 -0.27 0.90 16 6 C -0.48 -12.87 7.17 -34.44 -0.25 -13.11 16 7 H 0.08 2.36 8.04 -52.49 -0.42 1.93 16 8 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 9 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 10 Si 0.87 21.20 27.59 -169.99 -4.69 16.51 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.26 -6.27 6.06 56.52 0.34 -5.93 16 14 C 0.08 1.67 3.07 -66.36 -0.20 1.46 16 15 H 0.02 0.44 6.42 -51.93 -0.33 0.10 16 16 N -0.82 -16.37 8.44 -3.52 -0.03 -16.40 16 17 C 0.08 1.36 1.92 -66.64 -0.13 1.24 16 18 H 0.05 0.91 7.49 -51.93 -0.39 0.52 16 19 C -0.07 -1.05 1.82 -90.62 -0.17 -1.21 16 20 C -0.12 -1.55 4.94 -26.73 -0.13 -1.68 16 21 C -0.12 -1.35 5.92 -26.73 -0.16 -1.50 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.30 5.92 -26.76 -0.16 -1.46 16 24 C -0.11 -1.44 4.02 -26.76 -0.11 -1.54 16 25 H 0.07 0.87 5.20 -51.93 -0.27 0.60 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.04 0.96 7.86 -51.93 -0.41 0.56 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.35 7.68 8.04 -39.29 -0.32 7.36 16 32 H 0.31 5.22 8.96 -39.29 -0.35 4.87 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.91 6.51 -51.93 -0.34 0.57 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.98 5.82 -51.93 -0.30 0.68 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -28.30 314.27 -9.26 -37.56 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.66 Total: 9.88 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.25 Total: -15.58 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.39 Total: -53.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.69 Total: 16.51 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.30 -9.26 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.770 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds