Wall clock time and date at job start Mon Mar 30 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48539 * 110.99957 * 2 1 4 4 C 1.54940 * 103.22668 * 200.27599 * 3 2 1 5 5 H 1.09002 * 110.72704 * 279.05654 * 4 3 2 6 6 C 1.50699 * 110.87450 * 155.84537 * 4 3 2 7 7 H 1.08002 * 119.99685 * 328.33989 * 6 4 3 8 8 C 1.37876 * 120.00024 * 148.34399 * 6 4 3 9 9 N 1.31510 * 119.99874 * 184.99442 * 8 6 4 10 10 Si 1.86792 * 120.00028 * 4.99822 * 8 6 4 11 11 H 1.48501 * 109.47265 * 84.74051 * 10 8 6 12 12 H 1.48502 * 109.47065 * 204.74054 * 10 8 6 13 13 H 1.48500 * 109.47178 * 324.74312 * 10 8 6 14 14 C 1.54597 * 102.91987 * 37.41356 * 4 3 2 15 15 H 1.08995 * 110.30763 * 219.12018 * 14 4 3 16 16 N 1.46906 * 110.30682 * 96.95838 * 14 4 3 17 17 C 1.47900 * 111.00458 * 242.60455 * 2 1 3 18 18 H 1.09004 * 109.91510 * 26.48871 * 17 2 1 19 19 C 1.53005 * 109.91597 * 265.19975 * 17 2 1 20 20 C 1.53002 * 109.46777 * 182.40942 * 19 17 2 21 21 C 1.53005 * 109.46777 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.47302 * 59.99550 * 21 20 19 23 23 C 1.52997 * 109.47269 * 300.00032 * 22 21 20 24 24 C 1.52996 * 109.47302 * 62.40492 * 19 17 2 25 25 H 1.09004 * 109.47089 * 177.39560 * 1 2 3 26 26 H 1.09005 * 109.47672 * 297.39587 * 1 2 3 27 27 H 1.08997 * 109.47288 * 57.39885 * 1 2 3 28 28 H 1.09001 * 110.66472 * 81.84839 * 3 2 1 29 29 H 1.08998 * 110.66313 * 318.71506 * 3 2 1 30 30 H 0.97000 * 120.00294 * 179.97438 * 9 8 6 31 31 H 1.00894 * 110.99883 * 66.35217 * 16 14 4 32 32 H 1.00901 * 110.99904 * 190.30989 * 16 14 4 33 33 H 1.08999 * 109.46493 * 302.40290 * 19 17 2 34 34 H 1.08997 * 109.46668 * 299.99321 * 20 19 17 35 35 H 1.08991 * 109.47545 * 59.99979 * 20 19 17 36 36 H 1.08999 * 109.46493 * 299.99348 * 21 20 19 37 37 H 1.08998 * 109.46999 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47337 * 180.02562 * 22 21 20 39 39 H 1.09006 * 109.46884 * 59.99849 * 22 21 20 40 40 H 1.08998 * 109.47495 * 300.00159 * 23 22 21 41 41 H 1.09000 * 109.47379 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47286 * 300.00061 * 24 19 17 43 43 H 1.09006 * 109.46884 * 59.99849 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5227 5 1 4.1115 0.8836 0.2788 6 6 3.9553 2.4877 -1.1424 7 1 3.2676 3.1569 -1.6381 8 6 5.2962 2.8016 -1.0768 9 7 5.7233 3.9599 -1.5299 10 14 6.5063 1.5815 -0.3445 11 1 6.9246 0.6118 -1.3885 12 1 7.6980 2.3091 0.1612 13 1 5.8583 0.8535 0.7760 14 6 3.2982 0.1053 -1.5930 15 1 4.1470 -0.5774 -1.5539 16 7 3.1842 0.7027 -2.9302 17 6 1.9990 -0.6353 -1.2259 18 1 1.2758 -0.5402 -2.0359 19 6 2.2982 -2.1121 -0.9600 20 6 2.9017 -2.7442 -2.2158 21 6 3.2003 -4.2212 -1.9501 22 6 1.9031 -4.9465 -1.5869 23 6 1.2997 -4.3143 -0.3311 24 6 1.0014 -2.8378 -0.5964 25 1 -0.3633 -1.0266 -0.0467 26 1 -0.3634 0.4729 0.9124 27 1 -0.3634 0.5537 -0.8657 28 1 2.0041 1.7977 1.0096 29 1 1.4236 2.0204 -0.6729 30 1 6.6667 4.1810 -1.4834 31 1 4.0424 1.1623 -3.1953 32 1 2.9187 0.0100 -3.6142 33 1 3.0055 -2.1965 -0.1349 34 1 2.1944 -2.6597 -3.0408 35 1 3.8256 -2.2273 -2.4748 36 1 3.9074 -4.3060 -1.1249 37 1 3.6299 -4.6717 -2.8449 38 1 2.1159 -5.9985 -1.3972 39 1 1.1960 -4.8615 -2.4121 40 1 2.0067 -4.3992 0.4941 41 1 0.3753 -4.8307 -0.0726 42 1 0.5715 -2.3874 0.2983 43 1 0.2941 -2.7532 -1.4215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:43 Heat of formation + Delta-G solvation = -33.070178 kcal Electronic energy + Delta-G solvation = -20284.906520 eV Core-core repulsion = 17555.858185 eV Total energy + Delta-G solvation = -2729.048335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94029 -38.47909 -35.43211 -34.24212 -32.68502 -31.56904 -31.01025 -28.23807 -26.82262 -24.88626 -23.45153 -23.05498 -21.25233 -20.58219 -20.46097 -18.89789 -17.08888 -16.76045 -16.29802 -15.81095 -15.53923 -15.09836 -14.99132 -14.88073 -14.83380 -14.60821 -14.06125 -13.86529 -13.31534 -13.19162 -12.97818 -12.79296 -12.60557 -12.41791 -12.31666 -11.99636 -11.88743 -11.78314 -11.68544 -11.36348 -11.28625 -11.10941 -10.79071 -10.68506 -10.61684 -9.32869 -9.19334 -8.21553 -6.19805 1.30923 1.35351 1.43498 2.35729 3.09070 3.14379 3.63826 3.87744 3.91867 4.05718 4.14437 4.23460 4.36268 4.38148 4.49899 4.53318 4.61001 4.63891 4.68622 4.71620 4.72208 4.77015 4.81875 4.93534 5.01965 5.08172 5.18386 5.22079 5.28927 5.29989 5.34688 5.36561 5.42016 5.45705 5.57543 5.64651 5.67783 6.02632 6.28099 6.36262 6.66595 6.78958 6.96891 7.40462 8.94931 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.007372 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.869550 B = 3797.087141 C = 4359.203272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.522 5.522 3 C 0.060 3.940 4 C 0.002 3.998 5 H 0.039 0.961 6 C -0.465 4.465 7 H 0.034 0.966 8 C 0.015 3.985 9 N -0.949 5.949 10 Si 0.928 3.072 11 H -0.269 1.269 12 H -0.291 1.291 13 H -0.252 1.252 14 C 0.088 3.912 15 H 0.019 0.981 16 N -0.829 5.829 17 C 0.086 3.914 18 H 0.051 0.949 19 C -0.066 4.066 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.109 4.109 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.024 0.976 30 H 0.262 0.738 31 H 0.341 0.659 32 H 0.329 0.671 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.538 -18.703 0.689 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.245 5.245 3 C -0.068 4.068 4 C -0.018 4.018 5 H 0.057 0.943 6 C -0.504 4.504 7 H 0.052 0.948 8 C -0.182 4.182 9 N -0.590 5.590 10 Si 0.755 3.245 11 H -0.195 1.195 12 H -0.218 1.218 13 H -0.177 1.177 14 C -0.025 4.025 15 H 0.037 0.963 16 N -0.360 5.360 17 C -0.023 4.023 18 H 0.069 0.931 19 C -0.085 4.085 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.146 4.146 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.819 -18.431 1.461 20.484 hybrid contribution 1.436 0.227 -0.843 1.681 sum -7.382 -18.204 0.618 19.654 Atomic orbital electron populations 1.22740 0.87467 1.02898 1.00585 1.64656 1.08575 1.14733 1.36534 1.23005 0.95884 0.88867 0.99027 1.20258 0.93919 0.93821 0.93801 0.94315 1.20805 0.92720 1.03749 1.33132 0.94756 1.25740 1.00005 0.96295 0.96130 1.70046 1.15594 1.23265 1.50074 0.86035 0.78643 0.79775 0.80094 1.19469 1.21778 1.17685 1.22269 0.94904 0.94074 0.91228 0.96277 1.58657 1.41290 1.33465 1.02566 1.22413 0.94943 0.94119 0.90842 0.93120 1.21050 0.97995 0.91817 0.97630 1.21602 1.00081 0.96210 0.97340 1.21507 0.98076 0.94387 1.01382 1.21518 0.96557 0.99233 0.97907 1.21520 1.00966 0.95028 0.97862 1.21634 0.96143 0.95355 1.01452 0.89073 0.91065 0.96510 0.91631 0.95722 0.92879 0.84452 0.85894 0.92585 0.91572 0.93572 0.92683 0.91314 0.91103 0.91707 0.92625 0.90902 0.91255 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 8.96 127.69 1.14 1.46 16 2 N -0.52 -18.06 4.93 -884.07 -4.36 -22.42 16 3 C 0.06 2.53 5.99 86.65 0.52 3.05 16 4 C 0.00 0.09 2.47 -10.33 -0.03 0.06 16 5 H 0.04 1.89 5.24 -2.39 -0.01 1.87 16 6 C -0.47 -25.90 7.17 25.60 0.18 -25.72 16 7 H 0.03 2.17 8.04 -2.91 -0.02 2.15 16 8 C 0.01 0.84 5.47 84.66 0.46 1.31 16 9 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 10 Si 0.93 44.19 27.59 68.60 1.89 46.08 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.25 -11.50 6.06 99.48 0.60 -10.90 16 14 C 0.09 3.50 3.07 45.79 0.14 3.64 16 15 H 0.02 0.79 6.42 -2.39 -0.02 0.77 16 16 N -0.83 -33.05 8.44 -165.04 -1.39 -34.44 16 17 C 0.09 2.85 1.92 45.06 0.09 2.94 16 18 H 0.05 1.71 7.49 -2.39 -0.02 1.69 16 19 C -0.07 -1.80 1.82 -10.79 -0.02 -1.82 16 20 C -0.11 -2.78 4.94 30.60 0.15 -2.63 16 21 C -0.12 -2.32 5.92 30.59 0.18 -2.13 16 22 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 23 C -0.12 -2.13 5.92 30.58 0.18 -1.95 16 24 C -0.11 -2.40 4.02 30.58 0.12 -2.27 16 25 H 0.09 2.11 5.20 -2.39 -0.01 2.10 16 26 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.02 0.49 8.00 -2.39 -0.02 0.47 16 28 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.02 1.11 7.86 -2.39 -0.02 1.10 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.34 15.10 8.04 -89.70 -0.72 14.37 16 32 H 0.33 10.83 8.96 -89.69 -0.80 10.03 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.27 6.51 -2.39 -0.02 1.25 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.60 5.82 -2.39 -0.01 1.59 16 43 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -62.10 314.27 -0.89 -62.99 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.64 Total: 31.78 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.31 Total: -25.82 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -5.45 Total: -115.04 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.89 Total: 46.08 kcal Total: -62.10 -0.89 -62.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.925 kcal (2) G-P(sol) polarization free energy of solvation -62.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds